Wall clock time and date at job start Wed Apr 1 2020 04:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47272 * 2 1 4 4 O 1.42901 * 109.47243 * 239.98958 * 2 1 3 5 5 C 1.52999 * 109.46851 * 119.99396 * 2 1 3 6 6 C 1.53002 * 109.47455 * 186.73262 * 5 2 1 7 7 H 1.08992 * 109.67725 * 59.30596 * 6 5 2 8 8 C 1.53298 * 109.67862 * 298.79089 * 6 5 2 9 9 O 1.42963 * 109.22099 * 187.96953 * 8 6 5 10 10 C 1.42962 * 114.16354 * 62.58729 * 9 8 6 11 11 C 1.53296 * 109.22078 * 297.41466 * 10 9 8 12 12 N 1.47148 * 109.68450 * 179.86645 * 6 5 2 13 13 C 1.34779 * 120.98480 * 350.23732 * 12 6 5 14 14 O 1.21283 * 119.99700 * 5.41907 * 13 12 6 15 15 C 1.50695 * 120.00291 * 185.42530 * 13 12 6 16 16 C 1.53002 * 109.46911 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.47152 * 55.00628 * 16 15 13 18 18 C 1.50699 * 109.47580 * 294.99850 * 16 15 13 19 19 H 1.08001 * 119.99758 * 325.04248 * 18 16 15 20 20 C 1.37875 * 120.00236 * 145.03505 * 18 16 15 21 21 N 1.31515 * 119.99850 * 5.05187 * 20 18 16 22 22 Si 1.86793 * 120.00398 * 185.05123 * 20 18 16 23 23 H 1.48498 * 109.47072 * 89.99913 * 22 20 18 24 24 H 1.48495 * 109.47566 * 210.00363 * 22 20 18 25 25 H 1.48506 * 109.47119 * 330.00199 * 22 20 18 26 26 C 1.50700 * 109.46772 * 174.99974 * 16 15 13 27 27 C 1.38235 * 119.99954 * 64.67566 * 26 16 15 28 28 C 1.38239 * 119.99797 * 179.74525 * 27 26 16 29 29 C 1.38235 * 119.99952 * 0.52290 * 28 27 26 30 30 C 1.38229 * 120.00274 * 359.75258 * 29 28 27 31 31 C 1.38234 * 120.00001 * 244.94855 * 26 16 15 32 32 H 1.09003 * 109.47152 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47655 * 300.00745 * 1 2 3 34 34 H 1.09005 * 109.46557 * 60.00909 * 1 2 3 35 35 H 0.96696 * 113.99968 * 300.00225 * 4 2 1 36 36 H 1.09002 * 109.47207 * 306.73477 * 5 2 1 37 37 H 1.09001 * 109.47576 * 66.72880 * 5 2 1 38 38 H 1.08991 * 109.51430 * 307.89698 * 8 6 5 39 39 H 1.09002 * 109.50922 * 68.05157 * 8 6 5 40 40 H 1.08998 * 109.51586 * 57.33807 * 10 9 8 41 41 H 1.08998 * 109.51166 * 177.49406 * 10 9 8 42 42 H 1.09001 * 109.67949 * 172.02650 * 11 10 9 43 43 H 1.09003 * 109.68375 * 292.54777 * 11 10 9 44 44 H 1.08997 * 109.47027 * 299.99574 * 15 13 12 45 45 H 1.09007 * 109.47142 * 60.00089 * 15 13 12 46 46 H 0.96997 * 120.00475 * 179.97438 * 21 20 18 47 47 H 1.07996 * 120.00153 * 359.97438 * 27 26 16 48 48 H 1.07998 * 120.00078 * 180.29975 * 28 27 26 49 49 H 1.08006 * 119.99583 * 179.76903 * 29 28 27 50 50 H 1.07995 * 120.00329 * 179.97438 * 30 29 28 51 51 H 1.07997 * 120.00114 * 359.97438 * 31 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0399 -0.7211 1.2493 6 6 3.5606 -0.5764 1.3369 7 1 3.8267 0.4795 1.3827 8 6 4.2120 -1.2201 0.1075 9 8 5.6303 -1.2459 0.2857 10 6 6.0663 -2.0337 1.3961 11 6 5.5098 -1.4317 2.6915 12 7 4.0557 -1.2658 2.5389 13 6 3.2026 -1.7312 3.4728 14 8 2.0060 -1.6727 3.2839 15 6 3.7354 -2.3240 4.7517 16 6 2.5668 -2.7715 5.6320 17 1 1.9287 -3.4533 5.0698 18 6 1.7659 -1.5669 6.0544 19 1 2.2639 -0.6286 6.2494 20 6 0.3974 -1.6626 6.1919 21 7 -0.1978 -2.8270 6.0518 22 14 -0.6115 -0.1385 6.5773 23 1 -1.0335 0.5094 5.3095 24 1 -1.8131 -0.5249 7.3596 25 1 0.2101 0.8119 7.3692 26 6 3.0991 -3.4745 6.8541 27 6 3.8579 -2.7784 7.7764 28 6 4.3417 -3.4219 8.9001 29 6 4.0759 -4.7643 9.0960 30 6 3.3220 -5.4618 8.1709 31 6 2.8334 -4.8169 7.0500 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8898 34 1 -0.3632 0.5137 -0.8901 35 1 1.7210 -1.5954 -1.2326 36 1 1.5815 -0.2815 2.1352 37 1 1.7783 -1.7777 1.1913 38 1 3.8412 -2.2383 -0.0098 39 1 3.9673 -0.6380 -0.7809 40 1 5.7022 -3.0549 1.2835 41 1 7.1556 -2.0370 1.4348 42 1 5.7174 -2.1013 3.5262 43 1 5.9732 -0.4622 2.8745 44 1 4.3653 -3.1826 4.5193 45 1 4.3234 -1.5749 5.2821 46 1 -1.1605 -2.8944 6.1489 47 1 4.0695 -1.7308 7.6210 48 1 4.9304 -2.8769 9.6231 49 1 4.4571 -5.2680 9.9721 50 1 3.1147 -6.5106 8.3237 51 1 2.2440 -5.3617 6.3274 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356763336.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:53 Heat of formation + Delta-G solvation = -94.302811 kcal Electronic energy + Delta-G solvation = -32345.223715 eV Core-core repulsion = 28209.994907 eV Total energy + Delta-G solvation = -4135.228808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.37127 -38.53879 -37.77769 -37.63024 -34.49349 -34.04747 -32.77501 -31.41656 -30.75555 -30.03862 -29.04693 -27.88071 -25.97064 -25.55572 -23.37201 -22.80170 -21.79362 -21.50525 -21.29608 -19.70438 -18.47160 -16.99616 -16.54746 -16.40467 -16.27305 -15.89244 -15.52083 -15.30754 -15.04752 -14.81309 -14.60657 -14.52446 -14.12894 -13.88123 -13.59947 -13.21950 -12.98302 -12.80617 -12.56947 -12.40070 -12.30433 -12.02792 -11.91588 -11.78568 -11.67576 -11.56521 -11.34283 -10.94315 -10.90227 -10.83607 -10.70141 -10.60201 -10.58213 -10.29286 -10.09547 -10.06327 -9.89967 -9.45235 -9.04959 -8.50042 -8.24975 -8.07635 -8.04208 -7.63686 -5.96988 -3.96614 2.25653 2.31413 3.25134 3.34063 3.39857 3.41267 3.43021 3.87606 4.37320 4.47961 4.71380 4.78901 4.90402 5.02216 5.05150 5.15885 5.23041 5.25239 5.36872 5.38014 5.45286 5.58182 5.63633 5.70120 5.71052 5.75016 5.81585 5.83165 5.85339 5.97912 6.02543 6.05707 6.15163 6.20126 6.24578 6.38218 6.45515 6.50004 6.56680 6.77065 6.87081 6.95420 7.02921 7.16092 7.28160 7.41291 7.48996 7.62004 7.81928 7.89805 7.91866 8.02753 8.35242 8.99355 9.03770 9.65461 11.13067 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.009890 B = 0.004147 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.334901 B = 6750.337515 C = 8789.463961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.091 3.909 3 H 0.094 0.906 4 O -0.568 6.568 5 C -0.139 4.139 6 C 0.122 3.878 7 H 0.068 0.932 8 C 0.048 3.952 9 O -0.386 6.386 10 C 0.046 3.954 11 C 0.077 3.923 12 N -0.632 5.632 13 C 0.518 3.482 14 O -0.485 6.485 15 C -0.122 4.122 16 C 0.081 3.919 17 H 0.073 0.927 18 C -0.491 4.491 19 H 0.049 0.951 20 C 0.080 3.920 21 N -0.881 5.881 22 Si 0.884 3.116 23 H -0.281 1.281 24 H -0.289 1.289 25 H -0.277 1.277 26 C -0.022 4.022 27 C -0.114 4.114 28 C -0.131 4.131 29 C -0.155 4.155 30 C -0.128 4.128 31 C -0.120 4.120 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.373 0.627 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.125 0.875 40 H 0.053 0.947 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.259 0.741 47 H 0.113 0.887 48 H 0.105 0.895 49 H 0.104 0.896 50 H 0.105 0.895 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.957 0.362 -8.310 12.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.032 3.968 3 H 0.112 0.888 4 O -0.375 6.375 5 C -0.177 4.177 6 C 0.018 3.982 7 H 0.086 0.914 8 C -0.028 4.028 9 O -0.305 6.305 10 C -0.032 4.032 11 C -0.047 4.047 12 N -0.371 5.371 13 C 0.308 3.692 14 O -0.357 6.357 15 C -0.162 4.162 16 C 0.062 3.938 17 H 0.091 0.909 18 C -0.529 4.529 19 H 0.067 0.933 20 C -0.123 4.123 21 N -0.518 5.518 22 Si 0.713 3.287 23 H -0.207 1.207 24 H -0.215 1.215 25 H -0.202 1.202 26 C -0.022 4.022 27 C -0.133 4.133 28 C -0.150 4.150 29 C -0.173 4.173 30 C -0.146 4.146 31 C -0.138 4.138 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.221 0.779 36 H 0.129 0.871 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.143 0.857 40 H 0.071 0.929 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.068 0.932 47 H 0.131 0.869 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.124 0.876 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.462 0.974 -8.602 12.824 hybrid contribution -1.082 0.198 0.876 1.406 sum 8.379 1.172 -7.726 11.458 Atomic orbital electron populations 1.22396 0.96231 1.02730 1.02343 1.22209 0.93270 0.96622 0.84718 0.88810 1.86491 1.76521 1.29266 1.45184 1.22882 0.93166 1.02827 0.98807 1.21795 0.95192 0.96099 0.85091 0.91372 1.23494 0.79829 1.00872 0.98650 1.87949 1.22849 1.71189 1.48473 1.22954 0.99799 0.94320 0.86114 1.22301 0.81486 1.01954 0.98914 1.48435 1.06098 1.60445 1.22109 1.20908 0.86554 0.77542 0.84245 1.90749 1.14975 1.53035 1.76922 1.21858 1.00927 0.99539 0.93904 1.17838 0.90627 0.96834 0.88542 0.90925 1.20661 0.91403 0.94505 1.46317 0.93261 1.24780 0.97847 0.95253 0.94393 1.69903 1.09666 1.23071 1.49121 0.86729 0.79981 0.83887 0.78120 1.20697 1.21509 1.20164 1.20741 0.90983 0.92184 0.98318 1.20949 0.98637 0.99367 0.94305 1.20984 1.01312 0.94771 0.97897 1.20799 1.02105 0.94921 0.99516 1.20984 0.99219 0.98999 0.95408 1.21086 0.99992 0.94997 0.97764 0.92224 0.91354 0.92391 0.77941 0.87100 0.90423 0.93407 0.85740 0.92898 0.88232 0.88706 0.91257 0.91919 0.90610 0.93164 0.86932 0.87662 0.87791 0.87644 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 9.53 37.16 0.35 -1.81 16 2 C 0.09 1.11 3.49 -26.73 -0.09 1.01 16 3 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 4 O -0.57 -6.33 10.04 -35.23 -0.35 -6.68 16 5 C -0.14 -2.08 2.97 -26.73 -0.08 -2.16 16 6 C 0.12 1.74 3.19 -67.42 -0.22 1.52 16 7 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 8 C 0.05 0.62 5.14 37.31 0.19 0.81 16 9 O -0.39 -5.09 10.74 -35.23 -0.38 -5.47 16 10 C 0.05 0.50 6.98 37.31 0.26 0.76 16 11 C 0.08 0.93 6.52 -3.53 -0.02 0.91 16 12 N -0.63 -9.69 3.02 -164.75 -0.50 -10.19 16 13 C 0.52 9.86 7.37 -10.99 -0.08 9.78 16 14 O -0.49 -10.95 10.54 5.56 0.06 -10.90 16 15 C -0.12 -2.28 3.43 -27.88 -0.10 -2.37 16 16 C 0.08 1.85 1.69 -92.92 -0.16 1.70 16 17 H 0.07 1.93 6.94 -51.93 -0.36 1.57 16 18 C -0.49 -12.76 6.32 -34.44 -0.22 -12.98 16 19 H 0.05 1.29 7.82 -52.49 -0.41 0.88 16 20 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 21 N -0.88 -25.19 12.84 55.43 0.71 -24.48 16 22 Si 0.88 21.73 29.54 -169.99 -5.02 16.71 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.02 -0.46 4.77 -104.62 -0.50 -0.96 16 27 C -0.11 -2.26 8.87 -39.58 -0.35 -2.61 16 28 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 29 C -0.16 -2.65 10.05 -39.59 -0.40 -3.05 16 30 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 31 C -0.12 -2.47 9.67 -39.58 -0.38 -2.86 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.37 3.25 9.04 45.56 0.41 3.66 16 36 H 0.11 2.06 6.25 -51.93 -0.32 1.73 16 37 H 0.08 1.28 7.29 -51.93 -0.38 0.90 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.13 1.54 5.95 -51.93 -0.31 1.23 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 1.04 6.07 -51.93 -0.32 0.73 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.03 7.44 -51.93 -0.39 0.64 16 45 H 0.08 1.33 7.86 -51.93 -0.41 0.93 16 46 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.11 2.16 7.80 -52.49 -0.41 1.75 16 48 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 49 H 0.10 1.48 8.06 -52.48 -0.42 1.05 16 50 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 51 H 0.11 2.34 7.95 -52.49 -0.42 1.92 16 LS Contribution 399.73 15.07 6.02 6.02 Total: -1.00 -30.95 399.73 -9.65 -40.60 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.51 Total: 10.01 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.68 Total: -15.62 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.21 Total: -34.67 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.67 Total: -23.05 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.95 -9.65 -40.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356763336.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.703 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds