Wall clock time and date at job start Wed Apr 1 2020 04:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47272 * 2 1 4 4 O 1.42901 * 109.47243 * 239.98958 * 2 1 3 5 5 C 1.52999 * 109.46851 * 119.99396 * 2 1 3 6 6 C 1.53002 * 109.47455 * 186.73262 * 5 2 1 7 7 H 1.08992 * 109.67725 * 59.30596 * 6 5 2 8 8 C 1.53298 * 109.67862 * 298.79089 * 6 5 2 9 9 O 1.42963 * 109.22099 * 187.96953 * 8 6 5 10 10 C 1.42962 * 114.16354 * 62.58729 * 9 8 6 11 11 C 1.53296 * 109.22078 * 297.41466 * 10 9 8 12 12 N 1.47148 * 109.68450 * 179.86645 * 6 5 2 13 13 C 1.34779 * 120.98480 * 350.23732 * 12 6 5 14 14 O 1.21283 * 119.99700 * 5.41907 * 13 12 6 15 15 C 1.50695 * 120.00291 * 185.42530 * 13 12 6 16 16 C 1.53002 * 109.46911 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.47152 * 55.00628 * 16 15 13 18 18 C 1.50699 * 109.47580 * 294.99850 * 16 15 13 19 19 H 1.08001 * 119.99758 * 325.04248 * 18 16 15 20 20 C 1.37875 * 120.00236 * 145.03505 * 18 16 15 21 21 N 1.31515 * 119.99850 * 5.05187 * 20 18 16 22 22 Si 1.86793 * 120.00398 * 185.05123 * 20 18 16 23 23 H 1.48498 * 109.47072 * 89.99913 * 22 20 18 24 24 H 1.48495 * 109.47566 * 210.00363 * 22 20 18 25 25 H 1.48506 * 109.47119 * 330.00199 * 22 20 18 26 26 C 1.50700 * 109.46772 * 174.99974 * 16 15 13 27 27 C 1.38235 * 119.99954 * 64.67566 * 26 16 15 28 28 C 1.38239 * 119.99797 * 179.74525 * 27 26 16 29 29 C 1.38235 * 119.99952 * 0.52290 * 28 27 26 30 30 C 1.38229 * 120.00274 * 359.75258 * 29 28 27 31 31 C 1.38234 * 120.00001 * 244.94855 * 26 16 15 32 32 H 1.09003 * 109.47152 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47655 * 300.00745 * 1 2 3 34 34 H 1.09005 * 109.46557 * 60.00909 * 1 2 3 35 35 H 0.96696 * 113.99968 * 300.00225 * 4 2 1 36 36 H 1.09002 * 109.47207 * 306.73477 * 5 2 1 37 37 H 1.09001 * 109.47576 * 66.72880 * 5 2 1 38 38 H 1.08991 * 109.51430 * 307.89698 * 8 6 5 39 39 H 1.09002 * 109.50922 * 68.05157 * 8 6 5 40 40 H 1.08998 * 109.51586 * 57.33807 * 10 9 8 41 41 H 1.08998 * 109.51166 * 177.49406 * 10 9 8 42 42 H 1.09001 * 109.67949 * 172.02650 * 11 10 9 43 43 H 1.09003 * 109.68375 * 292.54777 * 11 10 9 44 44 H 1.08997 * 109.47027 * 299.99574 * 15 13 12 45 45 H 1.09007 * 109.47142 * 60.00089 * 15 13 12 46 46 H 0.96997 * 120.00475 * 179.97438 * 21 20 18 47 47 H 1.07996 * 120.00153 * 359.97438 * 27 26 16 48 48 H 1.07998 * 120.00078 * 180.29975 * 28 27 26 49 49 H 1.08006 * 119.99583 * 179.76903 * 29 28 27 50 50 H 1.07995 * 120.00329 * 179.97438 * 30 29 28 51 51 H 1.07997 * 120.00114 * 359.97438 * 31 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0399 -0.7211 1.2493 6 6 3.5606 -0.5764 1.3369 7 1 3.8267 0.4795 1.3827 8 6 4.2120 -1.2201 0.1075 9 8 5.6303 -1.2459 0.2857 10 6 6.0663 -2.0337 1.3961 11 6 5.5098 -1.4317 2.6915 12 7 4.0557 -1.2658 2.5389 13 6 3.2026 -1.7312 3.4728 14 8 2.0060 -1.6727 3.2839 15 6 3.7354 -2.3240 4.7517 16 6 2.5668 -2.7715 5.6320 17 1 1.9287 -3.4533 5.0698 18 6 1.7659 -1.5669 6.0544 19 1 2.2639 -0.6286 6.2494 20 6 0.3974 -1.6626 6.1919 21 7 -0.1978 -2.8270 6.0518 22 14 -0.6115 -0.1385 6.5773 23 1 -1.0335 0.5094 5.3095 24 1 -1.8131 -0.5249 7.3596 25 1 0.2101 0.8119 7.3692 26 6 3.0991 -3.4745 6.8541 27 6 3.8579 -2.7784 7.7764 28 6 4.3417 -3.4219 8.9001 29 6 4.0759 -4.7643 9.0960 30 6 3.3220 -5.4618 8.1709 31 6 2.8334 -4.8169 7.0500 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8898 34 1 -0.3632 0.5137 -0.8901 35 1 1.7210 -1.5954 -1.2326 36 1 1.5815 -0.2815 2.1352 37 1 1.7783 -1.7777 1.1913 38 1 3.8412 -2.2383 -0.0098 39 1 3.9673 -0.6380 -0.7809 40 1 5.7022 -3.0549 1.2835 41 1 7.1556 -2.0370 1.4348 42 1 5.7174 -2.1013 3.5262 43 1 5.9732 -0.4622 2.8745 44 1 4.3653 -3.1826 4.5193 45 1 4.3234 -1.5749 5.2821 46 1 -1.1605 -2.8944 6.1489 47 1 4.0695 -1.7308 7.6210 48 1 4.9304 -2.8769 9.6231 49 1 4.4571 -5.2680 9.9721 50 1 3.1147 -6.5106 8.3237 51 1 2.2440 -5.3617 6.3274 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356763336.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:52 Heat of formation + Delta-G solvation = -113.624942 kcal Electronic energy + Delta-G solvation = -32346.061585 eV Core-core repulsion = 28209.994907 eV Total energy + Delta-G solvation = -4136.066678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.63370 -39.99812 -39.10286 -38.63111 -35.97780 -35.52489 -34.03241 -33.19950 -31.77405 -31.50412 -30.44349 -29.12804 -27.41120 -27.04514 -24.81911 -24.04430 -23.19673 -22.77511 -22.42280 -21.25684 -19.84520 -18.47381 -18.22267 -17.47828 -17.42956 -17.29289 -16.68929 -16.47711 -16.40262 -16.21201 -15.88573 -15.79581 -15.62391 -15.39943 -14.87226 -14.62646 -14.30844 -14.09554 -13.97262 -13.76131 -13.61879 -13.50048 -13.38257 -13.19646 -12.89553 -12.86419 -12.70047 -12.57545 -12.50233 -12.34260 -12.05367 -11.94592 -11.83325 -11.69076 -11.62241 -11.27026 -11.14929 -10.94206 -10.92618 -10.49000 -9.74823 -9.54547 -9.31439 -9.18015 -8.04579 -6.06581 0.77384 0.83736 1.34045 1.37372 1.42421 1.94510 2.02626 2.44839 2.91812 3.18218 3.34836 3.39138 3.72617 3.77255 3.95555 4.03350 4.12020 4.15918 4.23711 4.24841 4.32029 4.33909 4.36676 4.40564 4.52076 4.53706 4.60617 4.62267 4.72744 4.73761 4.82938 4.86248 4.92597 4.96681 4.99843 5.01069 5.16595 5.21363 5.29538 5.34523 5.38612 5.52115 5.63335 5.74076 5.78297 5.83659 5.95066 6.16938 6.17923 6.41445 6.46727 6.56741 6.76347 7.01046 7.54396 7.57146 9.04953 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.009890 B = 0.004147 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.334901 B = 6750.337515 C = 8789.463961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.104 3.896 3 H 0.103 0.897 4 O -0.565 6.565 5 C -0.125 4.125 6 C 0.119 3.881 7 H 0.072 0.928 8 C 0.061 3.939 9 O -0.395 6.395 10 C 0.046 3.954 11 C 0.070 3.930 12 N -0.628 5.628 13 C 0.512 3.488 14 O -0.532 6.532 15 C -0.113 4.113 16 C 0.085 3.915 17 H 0.026 0.974 18 C -0.481 4.481 19 H 0.043 0.957 20 C 0.029 3.971 21 N -0.915 5.915 22 Si 0.929 3.071 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.267 1.267 26 C -0.045 4.045 27 C -0.127 4.127 28 C -0.127 4.127 29 C -0.148 4.148 30 C -0.128 4.128 31 C -0.144 4.144 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.385 0.615 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.133 0.867 40 H 0.051 0.949 41 H 0.133 0.867 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.253 0.747 47 H 0.113 0.887 48 H 0.140 0.860 49 H 0.143 0.857 50 H 0.132 0.868 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.895 0.623 -7.745 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.045 3.955 3 H 0.121 0.879 4 O -0.373 6.373 5 C -0.163 4.163 6 C 0.016 3.984 7 H 0.090 0.910 8 C -0.015 4.015 9 O -0.314 6.314 10 C -0.031 4.031 11 C -0.052 4.052 12 N -0.365 5.365 13 C 0.302 3.698 14 O -0.408 6.408 15 C -0.153 4.153 16 C 0.066 3.934 17 H 0.044 0.956 18 C -0.519 4.519 19 H 0.061 0.939 20 C -0.170 4.170 21 N -0.555 5.555 22 Si 0.757 3.243 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.191 1.191 26 C -0.046 4.046 27 C -0.145 4.145 28 C -0.144 4.144 29 C -0.165 4.165 30 C -0.146 4.146 31 C -0.162 4.162 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.234 0.766 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.150 0.850 40 H 0.070 0.930 41 H 0.151 0.849 42 H 0.125 0.875 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.062 0.938 47 H 0.131 0.869 48 H 0.157 0.843 49 H 0.161 0.839 50 H 0.149 0.851 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.458 1.245 -8.048 14.884 hybrid contribution -1.865 0.059 0.714 1.998 sum 10.593 1.305 -7.334 12.950 Atomic orbital electron populations 1.22372 0.96241 1.02430 1.02403 1.22002 0.93137 0.96655 0.83739 0.87907 1.86463 1.76470 1.30246 1.44102 1.22578 0.93802 1.01312 0.98626 1.21913 0.94681 0.96387 0.85460 0.90972 1.23353 0.79844 1.00600 0.97751 1.87941 1.22537 1.71615 1.49267 1.23134 1.01612 0.93731 0.84622 1.22610 0.79123 1.03216 1.00263 1.48417 1.07385 1.59183 1.21507 1.21015 0.86334 0.77547 0.84941 1.90763 1.16965 1.55028 1.77998 1.21699 0.99589 1.00723 0.93321 1.17602 0.91306 0.94916 0.89558 0.95554 1.20917 0.91609 0.95211 1.44201 0.93858 1.25389 0.99138 0.97079 0.95348 1.70037 1.09240 1.24539 1.51650 0.86005 0.78998 0.81679 0.77610 1.21355 1.21472 1.19106 1.20573 0.92921 0.92882 0.98207 1.21021 0.99022 0.99472 0.94988 1.21369 1.00479 0.95266 0.97321 1.21259 1.00525 0.94772 0.99990 1.21286 0.98540 1.00371 0.94392 1.21103 1.01017 0.95093 0.99006 0.92772 0.92930 0.90575 0.76611 0.91112 0.92676 0.93660 0.84960 0.93018 0.84933 0.87528 0.89906 0.89575 0.89209 0.93846 0.86889 0.84255 0.83920 0.85058 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.36 9.53 71.98 0.69 -3.67 16 2 C 0.10 2.54 3.49 30.59 0.11 2.64 16 3 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 4 O -0.57 -11.96 10.04 -148.98 -1.50 -13.45 16 5 C -0.13 -3.93 2.97 30.59 0.09 -3.84 16 6 C 0.12 3.37 3.19 44.97 0.14 3.51 16 7 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 8 C 0.06 1.49 5.14 72.08 0.37 1.86 16 9 O -0.40 -9.48 10.74 -148.98 -1.60 -11.08 16 10 C 0.05 0.89 6.98 72.08 0.50 1.39 16 11 C 0.07 1.55 6.52 86.35 0.56 2.11 16 12 N -0.63 -19.14 3.02 -793.53 -2.40 -21.53 16 13 C 0.51 20.14 7.37 87.66 0.65 20.79 16 14 O -0.53 -25.67 10.54 -3.04 -0.03 -25.70 16 15 C -0.11 -4.28 3.43 29.85 0.10 -4.18 16 16 C 0.09 4.09 1.69 -12.29 -0.02 4.07 16 17 H 0.03 1.49 6.94 -2.39 -0.02 1.48 16 18 C -0.48 -25.92 6.32 25.60 0.16 -25.76 16 19 H 0.04 2.32 7.82 -2.91 -0.02 2.30 16 20 C 0.03 1.67 5.45 84.65 0.46 2.14 16 21 N -0.91 -55.27 12.84 21.45 0.28 -55.00 16 22 Si 0.93 46.10 29.54 68.60 2.03 48.13 16 23 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 24 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 25 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 26 C -0.05 -1.97 4.77 -19.87 -0.09 -2.07 16 27 C -0.13 -4.87 8.87 22.27 0.20 -4.67 16 28 C -0.13 -4.03 10.05 22.27 0.22 -3.81 16 29 C -0.15 -4.48 10.05 22.27 0.22 -4.26 16 30 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 31 C -0.14 -6.02 9.67 22.27 0.22 -5.81 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.38 6.39 9.04 -74.06 -0.67 5.72 16 36 H 0.07 2.84 6.25 -2.39 -0.01 2.82 16 37 H 0.05 1.95 7.29 -2.39 -0.02 1.94 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.13 3.02 5.95 -2.39 -0.01 3.01 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.11 2.09 6.07 -2.39 -0.01 2.08 16 43 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.09 2.80 7.44 -2.39 -0.02 2.78 16 45 H 0.09 3.11 7.86 -2.38 -0.02 3.09 16 46 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 47 H 0.11 4.22 7.80 -2.91 -0.02 4.20 16 48 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 49 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 50 H 0.13 3.73 8.06 -2.91 -0.02 3.70 16 51 H 0.09 4.16 7.95 -2.91 -0.02 4.14 16 Total: -1.00 -71.07 399.73 1.83 -69.23 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.25 Total: 33.12 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 4.80 Total: -23.72 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -2.12 Total: -76.53 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -3.13 Total: -50.23 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -71.07 1.83 -69.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356763336.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.393 kcal (2) G-P(sol) polarization free energy of solvation -71.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds