Wall clock time and date at job start Wed Apr 1 2020 04:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46765 * 2 1 4 4 O 1.42899 * 109.47276 * 240.00340 * 2 1 3 5 5 C 1.53003 * 109.47196 * 120.00134 * 2 1 3 6 6 C 1.53007 * 109.46800 * 186.64344 * 5 2 1 7 7 H 1.09001 * 109.70515 * 61.07575 * 6 5 2 8 8 C 1.53297 * 109.67934 * 300.53854 * 6 5 2 9 9 O 1.42966 * 109.21826 * 187.97771 * 8 6 5 10 10 C 1.42957 * 114.16857 * 62.58092 * 9 8 6 11 11 C 1.53299 * 109.22382 * 297.41966 * 10 9 8 12 12 N 1.47150 * 109.67739 * 181.61387 * 6 5 2 13 13 C 1.34775 * 120.98256 * 350.27970 * 12 6 5 14 14 O 1.21282 * 120.00357 * 354.61110 * 13 12 6 15 15 C 1.50709 * 119.99784 * 174.61163 * 13 12 6 16 16 C 1.52999 * 109.46781 * 179.97438 * 15 13 12 17 17 H 1.08994 * 109.47658 * 304.99894 * 16 15 13 18 18 C 1.50705 * 109.47021 * 65.00446 * 16 15 13 19 19 H 1.08003 * 120.00399 * 25.08133 * 18 16 15 20 20 C 1.37876 * 119.99620 * 205.09072 * 18 16 15 21 21 N 1.31503 * 120.00351 * 5.03521 * 20 18 16 22 22 Si 1.86804 * 119.99740 * 185.04198 * 20 18 16 23 23 H 1.48496 * 109.47294 * 89.99615 * 22 20 18 24 24 H 1.48499 * 109.47045 * 210.00008 * 22 20 18 25 25 H 1.48506 * 109.47035 * 329.99619 * 22 20 18 26 26 C 1.50703 * 109.46840 * 184.99822 * 16 15 13 27 27 C 1.38233 * 119.99867 * 304.56332 * 26 16 15 28 28 C 1.38235 * 119.99827 * 179.78905 * 27 26 16 29 29 C 1.38242 * 119.99736 * 0.44091 * 28 27 26 30 30 C 1.38227 * 119.99993 * 359.81481 * 29 28 27 31 31 C 1.38228 * 119.99794 * 124.83922 * 26 16 15 32 32 H 1.09003 * 109.46765 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47032 * 299.99777 * 1 2 3 34 34 H 1.08995 * 109.46983 * 59.99635 * 1 2 3 35 35 H 0.96709 * 113.99908 * 59.99354 * 4 2 1 36 36 H 1.09002 * 109.46781 * 66.64587 * 5 2 1 37 37 H 1.08993 * 109.47002 * 306.64400 * 5 2 1 38 38 H 1.08998 * 109.51200 * 307.89770 * 8 6 5 39 39 H 1.08998 * 109.51485 * 68.05481 * 8 6 5 40 40 H 1.08997 * 109.51641 * 177.49717 * 10 9 8 41 41 H 1.09001 * 109.51616 * 57.34164 * 10 9 8 42 42 H 1.09007 * 109.68200 * 292.57979 * 11 10 9 43 43 H 1.08997 * 109.68402 * 172.02397 * 11 10 9 44 44 H 1.08995 * 109.47085 * 300.00085 * 15 13 12 45 45 H 1.09001 * 109.47152 * 59.99978 * 15 13 12 46 46 H 0.97010 * 120.00210 * 180.02562 * 21 20 18 47 47 H 1.07998 * 120.00184 * 359.97438 * 27 26 16 48 48 H 1.08002 * 120.00185 * 180.28133 * 28 27 26 49 49 H 1.08002 * 119.99374 * 179.83236 * 29 28 27 50 50 H 1.08002 * 120.00026 * 179.97438 * 30 29 28 51 51 H 1.08000 * 120.00346 * 359.97438 * 31 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 6 3.5610 -0.5783 1.3354 7 1 3.8273 0.4759 1.4123 8 6 4.2082 -1.1846 0.0849 9 8 5.6271 -1.2150 0.2571 10 6 6.0676 -2.0353 1.3419 11 6 5.5156 -1.4727 2.6567 12 7 4.0608 -1.3031 2.5145 13 6 3.2113 -1.7974 3.4366 14 8 2.0239 -1.5645 3.3539 15 6 3.7368 -2.6396 4.5706 16 6 2.5743 -3.0695 5.4677 17 1 2.0257 -2.1879 5.7991 18 6 1.6506 -3.9745 4.6938 19 1 2.0275 -4.5414 3.8553 20 6 0.3244 -4.0786 5.0561 21 7 -0.1579 -3.3155 6.0123 22 14 -0.7873 -5.3039 4.1887 23 1 -0.7465 -6.6035 4.9061 24 1 -2.1797 -4.7877 4.1782 25 1 -0.3195 -5.4945 2.7922 26 6 3.1116 -3.8071 6.6670 27 6 3.9247 -4.9112 6.4922 28 6 4.4211 -5.5852 7.5923 29 6 4.0969 -5.1603 8.8673 30 6 3.2796 -4.0594 9.0420 31 6 2.7867 -3.3828 7.9419 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 1.7210 -0.2700 -1.9980 36 1 1.7771 -1.7775 1.1917 37 1 1.5829 -0.2807 2.1352 38 1 3.8374 -2.1990 -0.0614 39 1 3.9599 -0.5763 -0.7848 40 1 7.1570 -2.0391 1.3765 41 1 5.7036 -3.0529 1.2001 42 1 5.9788 -0.5085 2.8666 43 1 5.7265 -2.1667 3.4703 44 1 4.2315 -3.5233 4.1678 45 1 4.4502 -2.0582 5.1546 46 1 -1.0909 -3.3891 6.2675 47 1 4.1745 -5.2456 5.4961 48 1 5.0600 -6.4451 7.4558 49 1 4.4825 -5.6885 9.7268 50 1 3.0260 -3.7277 10.0381 51 1 2.1482 -2.5226 8.0784 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356763340.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:02 Heat of formation + Delta-G solvation = -93.311515 kcal Electronic energy + Delta-G solvation = -32362.218558 eV Core-core repulsion = 28227.032736 eV Total energy + Delta-G solvation = -4135.185822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.30171 -38.50147 -37.73912 -37.53206 -34.48937 -34.03564 -32.91818 -31.40299 -30.71112 -29.99821 -28.99505 -27.86294 -25.92292 -25.54652 -23.37509 -22.77728 -21.79519 -21.42775 -20.87729 -19.65781 -18.44360 -17.44314 -16.77231 -16.38342 -16.23814 -15.88414 -15.56838 -15.08770 -14.89829 -14.60101 -14.55273 -14.32534 -14.12708 -13.84482 -13.67251 -13.28004 -13.04936 -12.54152 -12.47953 -12.34523 -12.31152 -12.07613 -11.92312 -11.74098 -11.62798 -11.49002 -11.42811 -11.00254 -10.89518 -10.76636 -10.64326 -10.57356 -10.39278 -10.24874 -10.04764 -9.99678 -9.83843 -9.42055 -9.11630 -8.42288 -8.28419 -8.07479 -8.03225 -7.60656 -5.94454 -3.93290 2.29629 2.35753 3.27205 3.35743 3.41760 3.44444 3.45700 3.88164 4.39994 4.50253 4.75562 4.83001 4.88087 5.06840 5.09006 5.16913 5.26139 5.30486 5.38537 5.40845 5.50162 5.63705 5.66595 5.72227 5.74794 5.79680 5.82265 5.84946 5.93015 5.97234 6.05917 6.11552 6.15764 6.25914 6.27804 6.42421 6.48714 6.53572 6.63979 6.77288 6.92424 7.00049 7.05624 7.22816 7.32161 7.43745 7.55143 7.65316 7.87423 7.92189 7.94912 8.06463 8.36124 9.01175 9.04979 9.67232 11.15124 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010198 B = 0.004101 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.973681 B = 6825.141821 C = 8634.907367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.092 3.908 3 H 0.050 0.950 4 O -0.566 6.566 5 C -0.109 4.109 6 C 0.121 3.879 7 H 0.066 0.934 8 C 0.055 3.945 9 O -0.389 6.389 10 C 0.045 3.955 11 C 0.077 3.923 12 N -0.631 5.631 13 C 0.519 3.481 14 O -0.486 6.486 15 C -0.122 4.122 16 C 0.082 3.918 17 H 0.069 0.931 18 C -0.487 4.487 19 H 0.050 0.950 20 C 0.076 3.924 21 N -0.880 5.880 22 Si 0.883 3.117 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.276 1.276 26 C -0.021 4.021 27 C -0.121 4.121 28 C -0.132 4.132 29 C -0.156 4.156 30 C -0.129 4.129 31 C -0.112 4.112 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.369 0.631 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.054 0.946 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.258 0.742 47 H 0.111 0.889 48 H 0.105 0.895 49 H 0.103 0.897 50 H 0.105 0.895 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.067 5.896 -7.703 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.033 3.967 3 H 0.068 0.932 4 O -0.372 6.372 5 C -0.146 4.146 6 C 0.018 3.982 7 H 0.084 0.916 8 C -0.021 4.021 9 O -0.308 6.308 10 C -0.032 4.032 11 C -0.046 4.046 12 N -0.370 5.370 13 C 0.308 3.692 14 O -0.358 6.358 15 C -0.162 4.162 16 C 0.063 3.937 17 H 0.087 0.913 18 C -0.524 4.524 19 H 0.068 0.932 20 C -0.127 4.127 21 N -0.517 5.517 22 Si 0.712 3.288 23 H -0.209 1.209 24 H -0.214 1.214 25 H -0.201 1.201 26 C -0.022 4.022 27 C -0.139 4.139 28 C -0.150 4.150 29 C -0.174 4.174 30 C -0.147 4.147 31 C -0.130 4.130 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.215 0.785 36 H 0.099 0.901 37 H 0.137 0.863 38 H 0.072 0.928 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.129 0.871 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.123 0.877 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.589 5.771 -7.281 13.352 hybrid contribution -1.169 -0.698 -0.583 1.481 sum 8.420 5.074 -7.865 12.590 Atomic orbital electron populations 1.22413 0.96289 1.03131 1.01961 1.22132 0.93227 0.95174 0.86161 0.93190 1.86630 1.76138 1.58349 1.16035 1.22340 0.92914 1.03437 0.95890 1.21804 0.95339 0.95457 0.85630 0.91602 1.23357 0.79312 1.01752 0.97719 1.87919 1.23019 1.69217 1.50608 1.22950 0.99675 0.94158 0.86460 1.22309 0.81417 1.01988 0.98928 1.48437 1.06124 1.58460 1.24021 1.20923 0.86321 0.79348 0.82609 1.90704 1.15510 1.56050 1.73516 1.21832 1.00766 0.98082 0.95543 1.17808 0.90355 0.97049 0.88482 0.91323 1.20667 0.93229 1.25268 1.13249 0.93216 1.24792 0.97769 0.95208 0.94917 1.69901 1.14391 1.37621 1.29824 0.86734 0.80297 0.81672 0.80110 1.20930 1.21371 1.20061 1.20703 0.90946 0.94635 0.95906 1.20919 0.98959 0.96267 0.97722 1.20952 1.01214 0.99737 0.93128 1.20790 1.01607 0.98538 0.96472 1.21003 0.98881 0.96671 0.98146 1.21087 0.99289 1.00454 0.92165 0.91616 0.91347 0.92982 0.78452 0.90095 0.86262 0.92796 0.86366 0.88300 0.92757 0.91262 0.88645 0.90565 0.91685 0.93184 0.87138 0.87722 0.87849 0.87673 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 9.53 37.16 0.35 -1.82 16 2 C 0.09 1.13 3.46 -26.73 -0.09 1.04 16 3 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 4 O -0.57 -6.43 9.96 -35.23 -0.35 -6.78 16 5 C -0.11 -1.75 3.04 -26.73 -0.08 -1.83 16 6 C 0.12 1.81 3.21 -67.42 -0.22 1.59 16 7 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 8 C 0.06 0.77 5.04 37.31 0.19 0.96 16 9 O -0.39 -5.38 10.74 -35.23 -0.38 -5.76 16 10 C 0.05 0.53 6.98 37.31 0.26 0.79 16 11 C 0.08 0.96 6.55 -3.53 -0.02 0.93 16 12 N -0.63 -10.03 3.02 -164.74 -0.50 -10.53 16 13 C 0.52 10.13 7.28 -10.98 -0.08 10.05 16 14 O -0.49 -11.25 10.74 5.56 0.06 -11.19 16 15 C -0.12 -2.31 3.21 -27.88 -0.09 -2.40 16 16 C 0.08 1.91 1.61 -92.92 -0.15 1.76 16 17 H 0.07 1.84 7.09 -51.93 -0.37 1.47 16 18 C -0.49 -12.85 6.62 -34.44 -0.23 -13.08 16 19 H 0.05 1.33 7.81 -52.48 -0.41 0.92 16 20 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 21 N -0.88 -25.27 12.92 55.43 0.72 -24.55 16 22 Si 0.88 22.03 29.54 -169.99 -5.02 17.01 16 23 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C -0.02 -0.46 4.77 -104.63 -0.50 -0.96 16 27 C -0.12 -2.39 8.94 -39.58 -0.35 -2.74 16 28 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 29 C -0.16 -2.72 10.05 -39.58 -0.40 -3.11 16 30 C -0.13 -2.40 10.05 -39.59 -0.40 -2.80 16 31 C -0.11 -2.38 9.67 -39.59 -0.38 -2.76 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.37 2.58 9.08 45.56 0.41 3.00 16 36 H 0.08 1.58 7.48 -51.93 -0.39 1.19 16 37 H 0.12 2.20 6.06 -51.93 -0.31 1.89 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.12 1.51 5.96 -51.93 -0.31 1.20 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 43 H 0.10 1.08 6.04 -51.93 -0.31 0.76 16 44 H 0.08 1.35 7.07 -51.93 -0.37 0.99 16 45 H 0.06 1.08 7.81 -51.93 -0.41 0.68 16 46 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.11 2.08 7.38 -52.49 -0.39 1.69 16 48 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 49 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 50 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 51 H 0.12 2.55 7.95 -52.49 -0.42 2.13 16 LS Contribution 399.24 15.07 6.02 6.02 Total: -1.00 -31.76 399.24 -9.62 -41.37 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.48 Total: 9.51 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -2.68 Total: -15.11 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.22 Total: -35.08 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.67 Total: -23.72 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.76 -9.62 -41.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356763340.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.937 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds