Wall clock time and date at job start Wed Apr 1 2020 04:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46765 * 2 1 4 4 O 1.42899 * 109.47276 * 240.00340 * 2 1 3 5 5 C 1.53003 * 109.47196 * 120.00134 * 2 1 3 6 6 C 1.53007 * 109.46800 * 186.64344 * 5 2 1 7 7 H 1.09001 * 109.70515 * 61.07575 * 6 5 2 8 8 C 1.53297 * 109.67934 * 300.53854 * 6 5 2 9 9 O 1.42966 * 109.21826 * 187.97771 * 8 6 5 10 10 C 1.42957 * 114.16857 * 62.58092 * 9 8 6 11 11 C 1.53299 * 109.22382 * 297.41966 * 10 9 8 12 12 N 1.47150 * 109.67739 * 181.61387 * 6 5 2 13 13 C 1.34775 * 120.98256 * 350.27970 * 12 6 5 14 14 O 1.21282 * 120.00357 * 354.61110 * 13 12 6 15 15 C 1.50709 * 119.99784 * 174.61163 * 13 12 6 16 16 C 1.52999 * 109.46781 * 179.97438 * 15 13 12 17 17 H 1.08994 * 109.47658 * 304.99894 * 16 15 13 18 18 C 1.50705 * 109.47021 * 65.00446 * 16 15 13 19 19 H 1.08003 * 120.00399 * 25.08133 * 18 16 15 20 20 C 1.37876 * 119.99620 * 205.09072 * 18 16 15 21 21 N 1.31503 * 120.00351 * 5.03521 * 20 18 16 22 22 Si 1.86804 * 119.99740 * 185.04198 * 20 18 16 23 23 H 1.48496 * 109.47294 * 89.99615 * 22 20 18 24 24 H 1.48499 * 109.47045 * 210.00008 * 22 20 18 25 25 H 1.48506 * 109.47035 * 329.99619 * 22 20 18 26 26 C 1.50703 * 109.46840 * 184.99822 * 16 15 13 27 27 C 1.38233 * 119.99867 * 304.56332 * 26 16 15 28 28 C 1.38235 * 119.99827 * 179.78905 * 27 26 16 29 29 C 1.38242 * 119.99736 * 0.44091 * 28 27 26 30 30 C 1.38227 * 119.99993 * 359.81481 * 29 28 27 31 31 C 1.38228 * 119.99794 * 124.83922 * 26 16 15 32 32 H 1.09003 * 109.46765 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47032 * 299.99777 * 1 2 3 34 34 H 1.08995 * 109.46983 * 59.99635 * 1 2 3 35 35 H 0.96709 * 113.99908 * 59.99354 * 4 2 1 36 36 H 1.09002 * 109.46781 * 66.64587 * 5 2 1 37 37 H 1.08993 * 109.47002 * 306.64400 * 5 2 1 38 38 H 1.08998 * 109.51200 * 307.89770 * 8 6 5 39 39 H 1.08998 * 109.51485 * 68.05481 * 8 6 5 40 40 H 1.08997 * 109.51641 * 177.49717 * 10 9 8 41 41 H 1.09001 * 109.51616 * 57.34164 * 10 9 8 42 42 H 1.09007 * 109.68200 * 292.57979 * 11 10 9 43 43 H 1.08997 * 109.68402 * 172.02397 * 11 10 9 44 44 H 1.08995 * 109.47085 * 300.00085 * 15 13 12 45 45 H 1.09001 * 109.47152 * 59.99978 * 15 13 12 46 46 H 0.97010 * 120.00210 * 180.02562 * 21 20 18 47 47 H 1.07998 * 120.00184 * 359.97438 * 27 26 16 48 48 H 1.08002 * 120.00185 * 180.28133 * 28 27 26 49 49 H 1.08002 * 119.99374 * 179.83236 * 29 28 27 50 50 H 1.08002 * 120.00026 * 179.97438 * 30 29 28 51 51 H 1.08000 * 120.00346 * 359.97438 * 31 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 6 3.5610 -0.5783 1.3354 7 1 3.8273 0.4759 1.4123 8 6 4.2082 -1.1846 0.0849 9 8 5.6271 -1.2150 0.2571 10 6 6.0676 -2.0353 1.3419 11 6 5.5156 -1.4727 2.6567 12 7 4.0608 -1.3031 2.5145 13 6 3.2113 -1.7974 3.4366 14 8 2.0239 -1.5645 3.3539 15 6 3.7368 -2.6396 4.5706 16 6 2.5743 -3.0695 5.4677 17 1 2.0257 -2.1879 5.7991 18 6 1.6506 -3.9745 4.6938 19 1 2.0275 -4.5414 3.8553 20 6 0.3244 -4.0786 5.0561 21 7 -0.1579 -3.3155 6.0123 22 14 -0.7873 -5.3039 4.1887 23 1 -0.7465 -6.6035 4.9061 24 1 -2.1797 -4.7877 4.1782 25 1 -0.3195 -5.4945 2.7922 26 6 3.1116 -3.8071 6.6670 27 6 3.9247 -4.9112 6.4922 28 6 4.4211 -5.5852 7.5923 29 6 4.0969 -5.1603 8.8673 30 6 3.2796 -4.0594 9.0420 31 6 2.7867 -3.3828 7.9419 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 1.7210 -0.2700 -1.9980 36 1 1.7771 -1.7775 1.1917 37 1 1.5829 -0.2807 2.1352 38 1 3.8374 -2.1990 -0.0614 39 1 3.9599 -0.5763 -0.7848 40 1 7.1570 -2.0391 1.3765 41 1 5.7036 -3.0529 1.2001 42 1 5.9788 -0.5085 2.8666 43 1 5.7265 -2.1667 3.4703 44 1 4.2315 -3.5233 4.1678 45 1 4.4502 -2.0582 5.1546 46 1 -1.0909 -3.3891 6.2675 47 1 4.1745 -5.2456 5.4961 48 1 5.0600 -6.4451 7.4558 49 1 4.4825 -5.6885 9.7268 50 1 3.0260 -3.7277 10.0381 51 1 2.1482 -2.5226 8.0784 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356763340.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:01 Heat of formation + Delta-G solvation = -113.879040 kcal Electronic energy + Delta-G solvation = -32363.110433 eV Core-core repulsion = 28227.032736 eV Total energy + Delta-G solvation = -4136.077697 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.61270 -39.99191 -39.10079 -38.53165 -36.00251 -35.54522 -34.19658 -33.24319 -31.74871 -31.49469 -30.42935 -29.13882 -27.44275 -27.04095 -24.84675 -24.07004 -23.21654 -22.76881 -22.02637 -21.23957 -19.85542 -18.59641 -18.41385 -17.89944 -17.44224 -17.24199 -16.75725 -16.59482 -16.27134 -15.96378 -15.87104 -15.73882 -15.42111 -15.32345 -14.86424 -14.71692 -14.44880 -14.13691 -13.95658 -13.62697 -13.54924 -13.47625 -13.39263 -13.22707 -13.00251 -12.86959 -12.65943 -12.59608 -12.51320 -12.47488 -12.12142 -11.89109 -11.81596 -11.67094 -11.47791 -11.26948 -11.13755 -10.99181 -10.82222 -10.48155 -9.83423 -9.53463 -9.36503 -9.19060 -8.04889 -6.06927 0.78458 0.84928 1.32802 1.34408 1.41715 1.91005 2.04023 2.43458 2.87280 3.18210 3.34182 3.44895 3.65907 3.77753 3.99071 4.03808 4.12638 4.15057 4.23235 4.25151 4.32407 4.34429 4.37094 4.41656 4.53154 4.55319 4.59773 4.64049 4.71790 4.74032 4.82578 4.90782 4.92051 4.94053 4.99880 5.03985 5.16490 5.20532 5.26520 5.37528 5.41672 5.51177 5.65046 5.74141 5.78440 5.84270 5.96200 6.17383 6.19520 6.39413 6.46314 6.55680 6.96141 6.98818 7.52299 7.55634 9.03661 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010198 B = 0.004101 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.973681 B = 6825.141821 C = 8634.907367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.103 3.897 3 H 0.077 0.923 4 O -0.575 6.575 5 C -0.099 4.099 6 C 0.119 3.881 7 H 0.082 0.918 8 C 0.069 3.931 9 O -0.394 6.394 10 C 0.044 3.956 11 C 0.070 3.930 12 N -0.628 5.628 13 C 0.512 3.488 14 O -0.536 6.536 15 C -0.113 4.113 16 C 0.087 3.913 17 H 0.021 0.979 18 C -0.479 4.479 19 H 0.040 0.960 20 C 0.025 3.975 21 N -0.911 5.911 22 Si 0.929 3.071 23 H -0.275 1.275 24 H -0.290 1.290 25 H -0.277 1.277 26 C -0.044 4.044 27 C -0.130 4.130 28 C -0.126 4.126 29 C -0.148 4.148 30 C -0.131 4.131 31 C -0.137 4.137 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.392 0.608 36 H 0.035 0.965 37 H 0.088 0.912 38 H 0.031 0.969 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.253 0.747 47 H 0.117 0.883 48 H 0.142 0.858 49 H 0.143 0.857 50 H 0.129 0.871 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.167 5.204 -8.207 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.044 3.956 3 H 0.095 0.905 4 O -0.384 6.384 5 C -0.137 4.137 6 C 0.016 3.984 7 H 0.099 0.901 8 C -0.008 4.008 9 O -0.313 6.313 10 C -0.033 4.033 11 C -0.052 4.052 12 N -0.366 5.366 13 C 0.301 3.699 14 O -0.411 6.411 15 C -0.153 4.153 16 C 0.068 3.932 17 H 0.039 0.961 18 C -0.517 4.517 19 H 0.058 0.942 20 C -0.174 4.174 21 N -0.551 5.551 22 Si 0.757 3.243 23 H -0.201 1.201 24 H -0.216 1.216 25 H -0.202 1.202 26 C -0.045 4.045 27 C -0.148 4.148 28 C -0.144 4.144 29 C -0.166 4.166 30 C -0.149 4.149 31 C -0.155 4.155 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.242 0.758 36 H 0.054 0.946 37 H 0.106 0.894 38 H 0.050 0.950 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.062 0.938 47 H 0.135 0.865 48 H 0.160 0.840 49 H 0.161 0.839 50 H 0.147 0.853 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.742 5.077 -7.823 15.790 hybrid contribution -2.016 -0.472 -0.418 2.112 sum 10.726 4.605 -8.241 14.289 Atomic orbital electron populations 1.22402 0.96372 1.01751 1.03068 1.21900 0.93027 0.95621 0.85093 0.90497 1.86561 1.76152 1.58874 1.16805 1.22009 0.94032 1.00667 0.97007 1.21930 0.94472 0.96219 0.85773 0.90056 1.23202 0.79539 1.00572 0.97468 1.87917 1.22385 1.69570 1.51385 1.23147 1.01670 0.93273 0.85204 1.22636 0.78925 1.03569 1.00049 1.48440 1.07516 1.57309 1.23300 1.21069 0.86096 0.79410 0.83298 1.90717 1.17625 1.57964 1.74820 1.21691 0.99552 0.98981 0.95106 1.17560 0.91130 0.94777 0.89729 0.96075 1.20899 0.93788 1.24443 1.12566 0.94188 1.25412 0.99258 0.96855 0.95881 1.70037 1.14144 1.39347 1.31573 0.86002 0.78814 0.80323 0.79156 1.20109 1.21620 1.20199 1.20518 0.92912 0.95853 0.95187 1.21038 0.98927 0.95766 0.99085 1.21363 1.00509 1.00051 0.92446 1.21253 1.00004 0.97502 0.97803 1.21282 0.98524 0.96786 0.98274 1.21054 1.00259 1.00869 0.93355 0.94220 0.92434 0.89643 0.75793 0.94572 0.89374 0.95042 0.84811 0.84652 0.93569 0.89294 0.87426 0.89022 0.89233 0.93777 0.86509 0.84044 0.83940 0.85320 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.38 9.53 71.98 0.69 -3.69 16 2 C 0.10 2.50 3.46 30.60 0.11 2.61 16 3 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 4 O -0.57 -12.35 9.96 -148.98 -1.48 -13.84 16 5 C -0.10 -3.39 3.04 30.60 0.09 -3.30 16 6 C 0.12 3.54 3.21 44.97 0.14 3.69 16 7 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 8 C 0.07 1.86 5.04 72.08 0.36 2.22 16 9 O -0.39 -9.95 10.74 -148.98 -1.60 -11.55 16 10 C 0.04 0.92 6.98 72.08 0.50 1.42 16 11 C 0.07 1.59 6.55 86.36 0.57 2.16 16 12 N -0.63 -19.99 3.02 -793.49 -2.40 -22.39 16 13 C 0.51 20.86 7.28 87.66 0.64 21.50 16 14 O -0.54 -26.81 10.74 -3.04 -0.03 -26.84 16 15 C -0.11 -4.39 3.21 29.85 0.10 -4.29 16 16 C 0.09 4.27 1.61 -12.28 -0.02 4.25 16 17 H 0.02 1.22 7.09 -2.39 -0.02 1.21 16 18 C -0.48 -26.49 6.62 25.60 0.17 -26.32 16 19 H 0.04 2.23 7.81 -2.91 -0.02 2.21 16 20 C 0.02 1.44 5.45 84.66 0.46 1.90 16 21 N -0.91 -55.51 12.92 21.45 0.28 -55.24 16 22 Si 0.93 46.98 29.54 68.60 2.03 49.00 16 23 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 25 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 26 C -0.04 -1.96 4.77 -19.87 -0.09 -2.06 16 27 C -0.13 -4.98 8.94 22.27 0.20 -4.78 16 28 C -0.13 -4.03 10.05 22.27 0.22 -3.81 16 29 C -0.15 -4.60 10.05 22.27 0.22 -4.38 16 30 C -0.13 -4.67 10.05 22.27 0.22 -4.44 16 31 C -0.14 -5.99 9.67 22.27 0.22 -5.77 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.39 4.52 9.08 -74.05 -0.67 3.85 16 36 H 0.04 1.52 7.48 -2.39 -0.02 1.51 16 37 H 0.09 3.56 6.06 -2.39 -0.01 3.55 16 38 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.13 3.16 5.96 -2.39 -0.01 3.14 16 40 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.11 2.17 6.04 -2.39 -0.01 2.16 16 44 H 0.09 3.22 7.07 -2.39 -0.02 3.21 16 45 H 0.09 2.97 7.81 -2.39 -0.02 2.95 16 46 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 47 H 0.12 4.22 7.38 -2.91 -0.02 4.20 16 48 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 49 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 50 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16 51 H 0.09 4.30 7.95 -2.91 -0.02 4.28 16 Total: -1.00 -75.14 399.24 1.84 -73.30 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.25 Total: 30.63 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 4.80 Total: -23.08 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -2.12 Total: -77.62 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -3.12 Total: -52.22 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Total: -75.14 1.84 -73.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356763340.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.584 kcal (2) G-P(sol) polarization free energy of solvation -75.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds