Wall clock time and date at job start Wed Apr 1 2020 04:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47664 * 2 1 4 4 O 1.42904 * 109.46774 * 240.00248 * 2 1 3 5 5 C 1.53002 * 109.47234 * 120.00402 * 2 1 3 6 6 C 1.53001 * 109.47095 * 185.38090 * 5 2 1 7 7 H 1.09001 * 109.67902 * 299.99943 * 6 5 2 8 8 C 1.53297 * 109.68325 * 60.51163 * 6 5 2 9 9 O 1.42966 * 109.22449 * 172.02279 * 8 6 5 10 10 C 1.42960 * 114.16583 * 297.42656 * 9 8 6 11 11 C 1.53292 * 109.22449 * 62.57759 * 10 9 8 12 12 N 1.47146 * 108.38670 * 307.69517 * 11 10 9 13 13 C 1.34777 * 120.98399 * 230.56285 * 12 11 10 14 14 O 1.21280 * 120.00186 * 174.85576 * 13 12 11 15 15 C 1.50695 * 120.00024 * 354.84309 * 13 12 11 16 16 C 1.52994 * 109.47363 * 180.02562 * 15 13 12 17 17 H 1.08999 * 109.47538 * 55.00039 * 16 15 13 18 18 C 1.50701 * 109.47290 * 295.00298 * 16 15 13 19 19 H 1.08003 * 120.00453 * 123.13726 * 18 16 15 20 20 C 1.37874 * 120.00031 * 303.14361 * 18 16 15 21 21 N 1.31513 * 120.00049 * 5.57808 * 20 18 16 22 22 Si 1.86806 * 120.00144 * 185.58169 * 20 18 16 23 23 H 1.48494 * 109.47261 * 89.99579 * 22 20 18 24 24 H 1.48501 * 109.47059 * 209.99894 * 22 20 18 25 25 H 1.48502 * 109.46720 * 329.99534 * 22 20 18 26 26 C 1.50701 * 109.47563 * 175.00632 * 16 15 13 27 27 C 1.38238 * 119.99816 * 212.31565 * 26 16 15 28 28 C 1.38243 * 119.99375 * 179.73883 * 27 26 16 29 29 C 1.38234 * 119.99983 * 0.55226 * 28 27 26 30 30 C 1.38230 * 120.00184 * 359.69731 * 29 28 27 31 31 C 1.38232 * 120.00040 * 32.57790 * 26 16 15 32 32 H 1.09009 * 109.47049 * 300.00047 * 1 2 3 33 33 H 1.09003 * 109.47447 * 59.99403 * 1 2 3 34 34 H 1.08996 * 109.47334 * 180.02562 * 1 2 3 35 35 H 0.96700 * 113.99918 * 304.96304 * 4 2 1 36 36 H 1.09000 * 109.46846 * 305.37403 * 5 2 1 37 37 H 1.08999 * 109.47221 * 65.37842 * 5 2 1 38 38 H 1.08997 * 109.51574 * 291.95432 * 8 6 5 39 39 H 1.09007 * 109.51027 * 52.10433 * 8 6 5 40 40 H 1.08998 * 109.50869 * 182.50623 * 10 9 8 41 41 H 1.09004 * 109.51233 * 302.59875 * 10 9 8 42 42 H 1.08995 * 109.68073 * 67.42449 * 11 10 9 43 43 H 1.09000 * 109.68058 * 187.97277 * 11 10 9 44 44 H 1.08996 * 109.47563 * 300.00840 * 15 13 12 45 45 H 1.09004 * 109.46885 * 60.01007 * 15 13 12 46 46 H 0.97006 * 120.00083 * 180.02562 * 21 20 18 47 47 H 1.07993 * 120.00433 * 359.97438 * 27 26 16 48 48 H 1.07995 * 119.99349 * 180.26696 * 28 27 26 49 49 H 1.07998 * 119.99392 * 179.72697 * 29 28 27 50 50 H 1.07995 * 120.00142 * 180.02562 * 30 29 28 51 51 H 1.08003 * 119.99848 * 0.02562 * 31 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.0400 -0.7213 1.2492 6 6 3.5640 -0.6052 1.3186 7 1 4.0075 -1.0594 0.4326 8 6 3.9662 0.8719 1.3977 9 8 5.3706 0.9646 1.6488 10 6 5.7810 0.3974 2.8952 11 6 5.4717 -1.1040 2.8928 12 7 4.0584 -1.2862 2.5258 13 6 3.2408 -2.0536 3.2735 14 8 2.0589 -2.1171 3.0090 15 6 3.7952 -2.8329 4.4380 16 6 2.6662 -3.6149 5.1122 17 1 2.1633 -4.2377 4.3724 18 6 1.6762 -2.6504 5.7130 19 1 0.6365 -2.6937 5.4240 20 6 2.0978 -1.7126 6.6316 21 7 3.3787 -1.5864 6.9017 22 14 0.8497 -0.6215 7.4924 23 1 0.3965 -1.2798 8.7440 24 1 1.4761 0.6848 7.8190 25 1 -0.3157 -0.4019 6.5986 26 6 3.2389 -4.4884 6.1985 27 6 2.6504 -5.7049 6.4895 28 6 3.1791 -6.5085 7.4823 29 6 4.2894 -6.0905 8.1918 30 6 4.8748 -4.8717 7.9043 31 6 4.3496 -4.0707 6.9076 32 1 -0.3634 0.5139 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 1.6600 -1.5704 -1.2722 36 1 1.6002 -0.2661 2.1366 37 1 1.7574 -1.7730 1.2023 38 1 3.7318 1.3642 0.4539 39 1 3.4190 1.3554 2.2071 40 1 6.8522 0.5483 3.0287 41 1 5.2411 0.8798 3.7101 42 1 6.1078 -1.6086 2.1656 43 1 5.6493 -1.5170 3.8857 44 1 4.5554 -3.5278 4.0813 45 1 4.2404 -2.1448 5.1567 46 1 3.6753 -0.9268 7.5483 47 1 1.7799 -6.0291 5.9387 48 1 2.7219 -7.4608 7.7067 49 1 4.6997 -6.7164 8.9704 50 1 5.7424 -4.5453 8.4583 51 1 4.8066 -3.1181 6.6834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356763343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:05 Heat of formation + Delta-G solvation = -89.544345 kcal Electronic energy + Delta-G solvation = -32686.812954 eV Core-core repulsion = 28551.790488 eV Total energy + Delta-G solvation = -4135.022465 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.24257 -38.46589 -37.65811 -37.52376 -34.56624 -34.09535 -32.90471 -31.10432 -30.51160 -29.86333 -28.76532 -27.74519 -26.01374 -25.83893 -23.37191 -22.65701 -21.85682 -21.37145 -20.98308 -19.70777 -18.34316 -16.91861 -16.41653 -16.31931 -15.99550 -15.81631 -15.60838 -15.21673 -15.03819 -14.79838 -14.54323 -14.37324 -13.95104 -13.79256 -13.49502 -13.21324 -13.00019 -12.80224 -12.49565 -12.30870 -12.23504 -12.00057 -11.81800 -11.61950 -11.50112 -11.34677 -11.20516 -10.97447 -10.88989 -10.79468 -10.74284 -10.63068 -10.39563 -10.22738 -10.02012 -9.98822 -9.85974 -9.34739 -9.20464 -8.54593 -8.19662 -7.91889 -7.85877 -7.49544 -6.06374 -4.13842 2.42963 2.51704 3.25081 3.31928 3.37054 3.39343 3.62191 3.90751 4.36784 4.45659 4.87191 4.91200 4.92121 5.09184 5.17568 5.18422 5.21349 5.28592 5.37758 5.39249 5.61173 5.69174 5.73857 5.76107 5.77825 5.85414 5.87473 5.92673 5.94455 6.00649 6.05141 6.14992 6.33980 6.39777 6.48604 6.56692 6.61555 6.69360 6.72528 7.01932 7.08831 7.15850 7.21246 7.22946 7.42851 7.48651 7.64675 7.68987 7.90620 8.00266 8.11891 8.13641 8.29467 8.83287 9.13549 9.49771 10.88206 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.003790 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.960759 B = 7385.854053 C = 7717.522600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.088 3.912 3 H 0.091 0.909 4 O -0.568 6.568 5 C -0.135 4.135 6 C 0.122 3.878 7 H 0.076 0.924 8 C 0.049 3.951 9 O -0.384 6.384 10 C 0.046 3.954 11 C 0.079 3.921 12 N -0.629 5.629 13 C 0.532 3.468 14 O -0.520 6.520 15 C -0.142 4.142 16 C 0.089 3.911 17 H 0.035 0.965 18 C -0.466 4.466 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 C -0.031 4.031 27 C -0.132 4.132 28 C -0.142 4.142 29 C -0.153 4.153 30 C -0.143 4.143 31 C -0.080 4.080 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.373 0.627 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.101 0.899 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.048 0.952 45 H 0.141 0.859 46 H 0.261 0.739 47 H 0.105 0.895 48 H 0.101 0.899 49 H 0.099 0.901 50 H 0.102 0.898 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.083 1.248 -8.165 9.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.029 3.971 3 H 0.109 0.891 4 O -0.374 6.374 5 C -0.173 4.173 6 C 0.018 3.982 7 H 0.093 0.907 8 C -0.028 4.028 9 O -0.302 6.302 10 C -0.032 4.032 11 C -0.044 4.044 12 N -0.367 5.367 13 C 0.323 3.677 14 O -0.395 6.395 15 C -0.182 4.182 16 C 0.069 3.931 17 H 0.054 0.946 18 C -0.504 4.504 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.200 1.200 26 C -0.032 4.032 27 C -0.150 4.150 28 C -0.160 4.160 29 C -0.172 4.172 30 C -0.162 4.162 31 C -0.098 4.098 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.220 0.780 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.119 0.881 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.120 0.880 44 H 0.067 0.933 45 H 0.158 0.842 46 H 0.071 0.929 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.954 1.974 -8.375 9.470 hybrid contribution -1.126 0.071 1.211 1.656 sum 2.828 2.046 -7.164 7.969 Atomic orbital electron populations 1.22432 0.96401 1.02735 1.02262 1.22253 0.93093 0.96486 0.85306 0.89079 1.86521 1.73428 1.32188 1.45221 1.22802 0.93095 1.03944 0.97418 1.21709 0.95776 0.92566 0.88146 0.90656 1.23141 0.82056 0.96071 1.01578 1.87906 1.23523 1.80209 1.38604 1.22991 1.00728 0.92937 0.86507 1.22290 0.82710 0.96785 1.02649 1.48378 1.10375 1.50936 1.26997 1.21145 0.86021 0.78103 0.82413 1.90599 1.15923 1.64288 1.68708 1.22091 1.00238 1.00430 0.95430 1.17636 0.92309 0.92361 0.90749 0.94633 1.21000 0.94808 1.12914 1.21657 0.92229 1.24841 0.95225 0.97082 0.96684 1.69463 1.13214 1.35598 1.34943 0.86585 0.81788 0.79713 0.79992 1.20777 1.21405 1.20021 1.20388 0.92587 0.92035 0.98197 1.20932 0.99887 0.95391 0.98836 1.20814 0.97701 0.99428 0.98037 1.20792 0.98061 0.97456 1.00857 1.21099 1.00310 0.95118 0.99631 1.21677 0.95770 0.98381 0.93997 0.91492 0.92390 0.92112 0.77958 0.89669 0.88255 0.88297 0.92861 0.88107 0.92392 0.91531 0.88021 0.93326 0.84213 0.92851 0.87660 0.88044 0.88250 0.88021 0.83263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.49 37.15 0.35 -1.71 16 2 C 0.09 1.09 3.40 -26.73 -0.09 1.00 16 3 H 0.09 1.08 6.37 -51.93 -0.33 0.75 16 4 O -0.57 -7.00 12.91 -35.23 -0.45 -7.46 16 5 C -0.13 -2.06 2.87 -26.73 -0.08 -2.14 16 6 C 0.12 1.85 3.10 -67.42 -0.21 1.64 16 7 H 0.08 1.15 7.85 -51.93 -0.41 0.74 16 8 C 0.05 0.69 5.70 37.31 0.21 0.90 16 9 O -0.38 -5.61 10.74 -35.23 -0.38 -5.99 16 10 C 0.05 0.61 6.98 37.31 0.26 0.87 16 11 C 0.08 1.12 6.52 -3.54 -0.02 1.10 16 12 N -0.63 -10.59 3.02 -164.76 -0.50 -11.08 16 13 C 0.53 10.74 7.37 -10.99 -0.08 10.66 16 14 O -0.52 -11.64 10.54 5.56 0.06 -11.58 16 15 C -0.14 -2.92 2.69 -27.89 -0.08 -3.00 16 16 C 0.09 2.05 1.99 -92.93 -0.18 1.86 16 17 H 0.04 0.84 7.88 -51.93 -0.41 0.43 16 18 C -0.47 -11.98 7.27 -34.44 -0.25 -12.23 16 19 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 20 C 0.06 1.53 5.15 -17.82 -0.09 1.44 16 21 N -0.89 -21.62 7.69 55.43 0.43 -21.20 16 22 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 C -0.03 -0.70 4.71 -104.62 -0.49 -1.19 16 27 C -0.13 -2.74 9.69 -39.58 -0.38 -3.12 16 28 C -0.14 -2.65 10.05 -39.58 -0.40 -3.05 16 29 C -0.15 -2.81 10.05 -39.59 -0.40 -3.21 16 30 C -0.14 -2.77 10.05 -39.59 -0.40 -3.17 16 31 C -0.08 -1.70 7.67 -39.59 -0.30 -2.00 16 32 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.37 3.56 9.03 45.56 0.41 3.97 16 36 H 0.08 1.53 7.25 -51.93 -0.38 1.15 16 37 H 0.10 1.71 6.30 -51.93 -0.33 1.38 16 38 H 0.10 1.23 6.80 -51.93 -0.35 0.87 16 39 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.10 1.44 6.07 -51.93 -0.32 1.12 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.14 3.03 3.86 -51.93 -0.20 2.83 16 46 H 0.26 6.23 8.31 -40.82 -0.34 5.89 16 47 H 0.11 2.06 8.06 -52.49 -0.42 1.64 16 48 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 49 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 50 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 51 H 0.15 3.26 4.92 -52.48 -0.26 3.00 16 LS Contribution 390.31 15.07 5.88 5.88 Total: -1.00 -28.16 390.31 -9.80 -37.96 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -7.19 Total: 13.00 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.63 Total: -15.36 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: -0.07 Total: -32.28 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.77 Total: -25.03 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.16 -9.80 -37.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356763343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.587 kcal (2) G-P(sol) polarization free energy of solvation -28.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds