Wall clock time and date at job start Wed Apr 1 2020 04:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47664 * 2 1 4 4 O 1.42904 * 109.46774 * 240.00248 * 2 1 3 5 5 C 1.53002 * 109.47234 * 120.00402 * 2 1 3 6 6 C 1.53001 * 109.47095 * 185.38090 * 5 2 1 7 7 H 1.09001 * 109.67902 * 299.99943 * 6 5 2 8 8 C 1.53297 * 109.68325 * 60.51163 * 6 5 2 9 9 O 1.42966 * 109.22449 * 172.02279 * 8 6 5 10 10 C 1.42960 * 114.16583 * 297.42656 * 9 8 6 11 11 C 1.53292 * 109.22449 * 62.57759 * 10 9 8 12 12 N 1.47146 * 108.38670 * 307.69517 * 11 10 9 13 13 C 1.34777 * 120.98399 * 230.56285 * 12 11 10 14 14 O 1.21280 * 120.00186 * 174.85576 * 13 12 11 15 15 C 1.50695 * 120.00024 * 354.84309 * 13 12 11 16 16 C 1.52994 * 109.47363 * 180.02562 * 15 13 12 17 17 H 1.08999 * 109.47538 * 55.00039 * 16 15 13 18 18 C 1.50701 * 109.47290 * 295.00298 * 16 15 13 19 19 H 1.08003 * 120.00453 * 123.13726 * 18 16 15 20 20 C 1.37874 * 120.00031 * 303.14361 * 18 16 15 21 21 N 1.31513 * 120.00049 * 5.57808 * 20 18 16 22 22 Si 1.86806 * 120.00144 * 185.58169 * 20 18 16 23 23 H 1.48494 * 109.47261 * 89.99579 * 22 20 18 24 24 H 1.48501 * 109.47059 * 209.99894 * 22 20 18 25 25 H 1.48502 * 109.46720 * 329.99534 * 22 20 18 26 26 C 1.50701 * 109.47563 * 175.00632 * 16 15 13 27 27 C 1.38238 * 119.99816 * 212.31565 * 26 16 15 28 28 C 1.38243 * 119.99375 * 179.73883 * 27 26 16 29 29 C 1.38234 * 119.99983 * 0.55226 * 28 27 26 30 30 C 1.38230 * 120.00184 * 359.69731 * 29 28 27 31 31 C 1.38232 * 120.00040 * 32.57790 * 26 16 15 32 32 H 1.09009 * 109.47049 * 300.00047 * 1 2 3 33 33 H 1.09003 * 109.47447 * 59.99403 * 1 2 3 34 34 H 1.08996 * 109.47334 * 180.02562 * 1 2 3 35 35 H 0.96700 * 113.99918 * 304.96304 * 4 2 1 36 36 H 1.09000 * 109.46846 * 305.37403 * 5 2 1 37 37 H 1.08999 * 109.47221 * 65.37842 * 5 2 1 38 38 H 1.08997 * 109.51574 * 291.95432 * 8 6 5 39 39 H 1.09007 * 109.51027 * 52.10433 * 8 6 5 40 40 H 1.08998 * 109.50869 * 182.50623 * 10 9 8 41 41 H 1.09004 * 109.51233 * 302.59875 * 10 9 8 42 42 H 1.08995 * 109.68073 * 67.42449 * 11 10 9 43 43 H 1.09000 * 109.68058 * 187.97277 * 11 10 9 44 44 H 1.08996 * 109.47563 * 300.00840 * 15 13 12 45 45 H 1.09004 * 109.46885 * 60.01007 * 15 13 12 46 46 H 0.97006 * 120.00083 * 180.02562 * 21 20 18 47 47 H 1.07993 * 120.00433 * 359.97438 * 27 26 16 48 48 H 1.07995 * 119.99349 * 180.26696 * 28 27 26 49 49 H 1.07998 * 119.99392 * 179.72697 * 29 28 27 50 50 H 1.07995 * 120.00142 * 180.02562 * 30 29 28 51 51 H 1.08003 * 119.99848 * 0.02562 * 31 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.0400 -0.7213 1.2492 6 6 3.5640 -0.6052 1.3186 7 1 4.0075 -1.0594 0.4326 8 6 3.9662 0.8719 1.3977 9 8 5.3706 0.9646 1.6488 10 6 5.7810 0.3974 2.8952 11 6 5.4717 -1.1040 2.8928 12 7 4.0584 -1.2862 2.5258 13 6 3.2408 -2.0536 3.2735 14 8 2.0589 -2.1171 3.0090 15 6 3.7952 -2.8329 4.4380 16 6 2.6662 -3.6149 5.1122 17 1 2.1633 -4.2377 4.3724 18 6 1.6762 -2.6504 5.7130 19 1 0.6365 -2.6937 5.4240 20 6 2.0978 -1.7126 6.6316 21 7 3.3787 -1.5864 6.9017 22 14 0.8497 -0.6215 7.4924 23 1 0.3965 -1.2798 8.7440 24 1 1.4761 0.6848 7.8190 25 1 -0.3157 -0.4019 6.5986 26 6 3.2389 -4.4884 6.1985 27 6 2.6504 -5.7049 6.4895 28 6 3.1791 -6.5085 7.4823 29 6 4.2894 -6.0905 8.1918 30 6 4.8748 -4.8717 7.9043 31 6 4.3496 -4.0707 6.9076 32 1 -0.3634 0.5139 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 1.6600 -1.5704 -1.2722 36 1 1.6002 -0.2661 2.1366 37 1 1.7574 -1.7730 1.2023 38 1 3.7318 1.3642 0.4539 39 1 3.4190 1.3554 2.2071 40 1 6.8522 0.5483 3.0287 41 1 5.2411 0.8798 3.7101 42 1 6.1078 -1.6086 2.1656 43 1 5.6493 -1.5170 3.8857 44 1 4.5554 -3.5278 4.0813 45 1 4.2404 -2.1448 5.1567 46 1 3.6753 -0.9268 7.5483 47 1 1.7799 -6.0291 5.9387 48 1 2.7219 -7.4608 7.7067 49 1 4.6997 -6.7164 8.9704 50 1 5.7424 -4.5453 8.4583 51 1 4.8066 -3.1181 6.6834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356763343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:05 Heat of formation + Delta-G solvation = -105.963528 kcal Electronic energy + Delta-G solvation = -32687.524943 eV Core-core repulsion = 28551.790488 eV Total energy + Delta-G solvation = -4135.734455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.59924 -39.99551 -39.05006 -38.59999 -36.19171 -35.54211 -34.12496 -32.88980 -31.56987 -31.40181 -30.24369 -29.11565 -27.60962 -27.16626 -24.79882 -24.03361 -23.24772 -22.76942 -22.21292 -21.29911 -19.81525 -18.37507 -17.98442 -17.58417 -17.29958 -17.22343 -16.87124 -16.73392 -16.42790 -16.13536 -15.73180 -15.71089 -15.51076 -15.30245 -14.84862 -14.74169 -14.34243 -14.07498 -13.95133 -13.79078 -13.53760 -13.33721 -13.19390 -13.08121 -13.00896 -12.83486 -12.71247 -12.57679 -12.42951 -12.19334 -12.01010 -11.89315 -11.85718 -11.79363 -11.73115 -11.19183 -11.06883 -11.02195 -10.93817 -10.44921 -9.69967 -9.41949 -9.28744 -9.12021 -7.97284 -6.09978 0.86323 0.97496 1.34230 1.38028 1.45400 1.99966 2.11566 2.43350 2.81620 3.18779 3.35279 3.46913 3.67459 3.78262 3.98533 4.06319 4.08209 4.18132 4.23114 4.28049 4.32205 4.38431 4.41813 4.51514 4.54422 4.60447 4.61832 4.70381 4.77696 4.83224 4.85182 4.89614 4.90376 4.96107 5.07936 5.13705 5.18578 5.27371 5.32982 5.41974 5.52200 5.64194 5.67381 5.77139 5.92024 5.95505 6.08004 6.10071 6.37442 6.40834 6.56753 6.62172 6.80398 6.84462 7.51832 7.59237 8.92700 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011171 B = 0.003790 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.960759 B = 7385.854053 C = 7717.522600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.099 3.901 3 H 0.103 0.897 4 O -0.572 6.572 5 C -0.122 4.122 6 C 0.120 3.880 7 H 0.082 0.918 8 C 0.055 3.945 9 O -0.388 6.388 10 C 0.048 3.952 11 C 0.074 3.926 12 N -0.628 5.628 13 C 0.524 3.476 14 O -0.552 6.552 15 C -0.130 4.130 16 C 0.091 3.909 17 H 0.012 0.988 18 C -0.486 4.486 19 H 0.028 0.972 20 C 0.037 3.963 21 N -0.884 5.884 22 Si 0.927 3.073 23 H -0.283 1.283 24 H -0.279 1.279 25 H -0.288 1.288 26 C -0.055 4.055 27 C -0.152 4.152 28 C -0.140 4.140 29 C -0.149 4.149 30 C -0.147 4.147 31 C -0.093 4.093 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.385 0.615 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.121 0.879 39 H 0.042 0.958 40 H 0.135 0.865 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.063 0.937 45 H 0.133 0.867 46 H 0.262 0.738 47 H 0.104 0.896 48 H 0.132 0.868 49 H 0.136 0.864 50 H 0.126 0.874 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.987 1.238 -7.961 10.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.039 3.961 3 H 0.121 0.879 4 O -0.380 6.380 5 C -0.160 4.160 6 C 0.017 3.983 7 H 0.100 0.900 8 C -0.023 4.023 9 O -0.306 6.306 10 C -0.029 4.029 11 C -0.049 4.049 12 N -0.364 5.364 13 C 0.315 3.685 14 O -0.430 6.430 15 C -0.170 4.170 16 C 0.072 3.928 17 H 0.031 0.969 18 C -0.523 4.523 19 H 0.046 0.954 20 C -0.162 4.162 21 N -0.523 5.523 22 Si 0.755 3.245 23 H -0.209 1.209 24 H -0.204 1.204 25 H -0.214 1.214 26 C -0.055 4.055 27 C -0.170 4.170 28 C -0.158 4.158 29 C -0.167 4.167 30 C -0.165 4.165 31 C -0.111 4.111 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.234 0.766 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.138 0.862 39 H 0.060 0.940 40 H 0.153 0.847 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.081 0.919 45 H 0.150 0.850 46 H 0.073 0.927 47 H 0.122 0.878 48 H 0.150 0.850 49 H 0.154 0.846 50 H 0.144 0.856 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.902 1.970 -8.178 10.276 hybrid contribution -1.692 -0.011 1.147 2.044 sum 4.210 1.959 -7.031 8.426 Atomic orbital electron populations 1.22401 0.95690 1.02700 1.02736 1.22113 0.93585 0.96473 0.83892 0.87945 1.86493 1.73677 1.33191 1.44596 1.22535 0.93274 1.02498 0.97671 1.21833 0.95563 0.93407 0.87466 0.90047 1.23128 0.81962 0.94919 1.02283 1.87906 1.23420 1.80231 1.39084 1.23101 1.02505 0.91725 0.85573 1.22525 0.81206 0.97944 1.03198 1.48375 1.11280 1.49901 1.26859 1.21136 0.85946 0.78651 0.82762 1.90603 1.17248 1.65464 1.69660 1.21885 0.99478 1.00226 0.95375 1.17519 0.92559 0.92023 0.90745 0.96948 1.20922 0.93912 1.14683 1.22819 0.95383 1.25154 0.96436 0.97590 0.96996 1.69547 1.12914 1.35327 1.34554 0.86048 0.80365 0.79205 0.78881 1.20944 1.20429 1.21409 1.20363 0.93755 0.92861 0.98554 1.21114 1.00273 0.95634 0.99994 1.21171 0.97633 1.00158 0.96828 1.21218 0.97277 0.97243 1.00916 1.21410 1.00940 0.95260 0.98921 1.21619 0.95843 0.98631 0.95008 0.92229 0.90609 0.92484 0.76598 0.92907 0.90683 0.86151 0.93970 0.84718 0.93882 0.89405 0.88240 0.91889 0.84978 0.92738 0.87820 0.85002 0.84642 0.85556 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.02 9.49 71.98 0.68 -3.34 16 2 C 0.10 2.40 3.40 30.59 0.10 2.51 16 3 H 0.10 2.28 6.37 -2.38 -0.02 2.27 16 4 O -0.57 -13.37 12.91 -148.98 -1.92 -15.29 16 5 C -0.12 -3.85 2.87 30.60 0.09 -3.77 16 6 C 0.12 3.64 3.10 44.97 0.14 3.78 16 7 H 0.08 2.40 7.85 -2.39 -0.02 2.38 16 8 C 0.05 1.48 5.70 72.08 0.41 1.89 16 9 O -0.39 -10.58 10.74 -148.98 -1.60 -12.18 16 10 C 0.05 1.19 6.98 72.08 0.50 1.69 16 11 C 0.07 2.00 6.52 86.35 0.56 2.56 16 12 N -0.63 -21.30 3.02 -793.56 -2.40 -23.70 16 13 C 0.52 22.02 7.37 87.66 0.65 22.67 16 14 O -0.55 -26.31 10.54 -3.03 -0.03 -26.34 16 15 C -0.13 -5.51 2.69 29.84 0.08 -5.43 16 16 C 0.09 4.39 1.99 -12.29 -0.02 4.36 16 17 H 0.01 0.62 7.88 -2.39 -0.02 0.60 16 18 C -0.49 -26.21 7.27 25.60 0.19 -26.02 16 19 H 0.03 1.64 7.82 -2.91 -0.02 1.61 16 20 C 0.04 1.93 5.15 84.65 0.44 2.37 16 21 N -0.88 -43.18 7.69 21.45 0.16 -43.01 16 22 Si 0.93 43.47 29.54 68.60 2.03 45.49 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 26 C -0.05 -2.47 4.71 -19.87 -0.09 -2.56 16 27 C -0.15 -6.31 9.69 22.27 0.22 -6.10 16 28 C -0.14 -4.93 10.05 22.27 0.22 -4.71 16 29 C -0.15 -4.96 10.05 22.27 0.22 -4.74 16 30 C -0.15 -5.35 10.05 22.27 0.22 -5.13 16 31 C -0.09 -3.90 7.67 22.27 0.17 -3.73 16 32 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.39 7.01 9.03 -74.06 -0.67 6.34 16 36 H 0.05 2.01 7.25 -2.39 -0.02 2.00 16 37 H 0.07 2.74 6.30 -2.39 -0.02 2.73 16 38 H 0.12 2.74 6.80 -2.39 -0.02 2.72 16 39 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.10 2.75 6.07 -2.39 -0.01 2.73 16 44 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.13 5.85 3.86 -2.38 -0.01 5.85 16 46 H 0.26 12.43 8.31 -92.70 -0.77 11.66 16 47 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 48 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 49 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 50 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 51 H 0.14 6.09 4.92 -2.91 -0.01 6.07 16 Total: -1.00 -62.17 390.31 1.29 -60.88 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: 0.27 Total: 37.84 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 4.78 Total: -23.69 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -2.23 Total: -66.72 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -3.56 Total: -53.81 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -62.17 1.29 -60.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356763343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.081 kcal (2) G-P(sol) polarization free energy of solvation -62.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds