Wall clock time and date at job start Wed Apr 1 2020 05:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.47091 * 2 1 4 4 C 1.42894 * 113.99900 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.90995 * 18.74393 * 4 3 2 6 6 C 1.53785 * 113.61390 * 247.49906 * 4 3 2 7 7 C 1.53779 * 87.07973 * 220.01987 * 6 4 3 8 8 H 1.09006 * 113.68968 * 270.86758 * 7 6 4 9 9 N 1.46499 * 113.61585 * 139.98164 * 7 6 4 10 10 C 1.34783 * 120.00250 * 107.50305 * 9 7 6 11 11 O 1.21279 * 119.99632 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99943 * 180.02562 * 10 9 7 13 13 C 1.52999 * 109.47024 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46830 * 55.00276 * 13 12 10 15 15 C 1.50698 * 109.47045 * 294.99945 * 13 12 10 16 16 H 1.07994 * 120.00208 * 333.33429 * 15 13 12 17 17 C 1.37880 * 120.00025 * 153.05888 * 15 13 12 18 18 N 1.31515 * 119.99523 * 354.50591 * 17 15 13 19 19 Si 1.86790 * 120.00232 * 174.50222 * 17 15 13 20 20 H 1.48502 * 109.47043 * 59.99858 * 19 17 15 21 21 H 1.48498 * 109.47149 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47276 * 300.00124 * 19 17 15 23 23 C 1.50701 * 109.46741 * 174.99934 * 13 12 10 24 24 C 1.38230 * 120.00038 * 63.83506 * 23 13 12 25 25 C 1.38233 * 119.99964 * 179.78095 * 24 23 13 26 26 C 1.38240 * 119.99954 * 0.46779 * 25 24 23 27 27 C 1.38233 * 119.99953 * 359.76324 * 26 25 24 28 28 C 1.38234 * 119.99872 * 244.09778 * 23 13 12 29 29 C 1.53775 * 113.61752 * 150.00007 * 4 3 2 30 30 H 1.09000 * 113.61652 * 25.42911 * 29 4 3 31 31 O 1.42900 * 113.61830 * 254.52964 * 29 4 3 32 32 C 1.42898 * 114.00537 * 112.49712 * 31 29 4 33 33 H 1.09004 * 109.46937 * 59.99814 * 1 2 3 34 34 H 1.08998 * 109.47074 * 180.02562 * 1 2 3 35 35 H 1.08997 * 109.46769 * 300.00152 * 1 2 3 36 36 H 1.09004 * 109.46835 * 240.00216 * 2 1 3 37 37 H 1.08997 * 109.47275 * 120.00318 * 2 1 3 38 38 H 1.08991 * 113.61859 * 105.46736 * 6 4 3 39 39 H 1.09003 * 113.60987 * 334.55979 * 6 4 3 40 40 H 0.96997 * 119.99601 * 287.49431 * 9 7 6 41 41 H 1.09007 * 109.46956 * 59.99498 * 12 10 9 42 42 H 1.09002 * 109.46960 * 299.99755 * 12 10 9 43 43 H 0.97002 * 120.00012 * 180.02562 * 18 17 15 44 44 H 1.07999 * 120.00079 * 359.97438 * 24 23 13 45 45 H 1.08007 * 120.00566 * 180.25109 * 25 24 23 46 46 H 1.08000 * 119.99961 * 179.79063 * 26 25 24 47 47 H 1.07992 * 120.00181 * 180.02562 * 27 26 25 48 48 H 1.08007 * 119.99966 * 359.97438 * 28 23 13 49 49 H 1.09005 * 109.47117 * 60.00075 * 32 31 29 50 50 H 1.08999 * 109.47876 * 180.02562 * 32 31 29 51 51 H 1.09007 * 109.46784 * 300.00698 * 32 31 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9288 0.5458 -0.3236 6 6 4.0029 2.0461 1.3011 7 6 4.9899 2.8313 0.4212 8 1 5.9147 2.2931 0.2129 9 7 5.2212 4.2034 0.8795 10 6 6.3944 4.5329 1.4555 11 8 7.2584 3.6932 1.5948 12 6 6.6321 5.9442 1.9273 13 6 8.0307 6.0489 2.5386 14 1 8.7697 5.7018 1.8165 15 6 8.1017 5.1964 3.7793 16 1 7.2050 4.9898 4.3446 17 6 9.3106 4.6755 4.1896 18 7 10.3813 4.8312 3.4420 19 14 9.4275 3.7488 5.8072 20 1 8.5237 2.5711 5.7694 21 1 10.8255 3.2940 6.0172 22 1 9.0265 4.6450 6.9213 23 6 8.3155 7.4843 2.8984 24 6 7.5544 8.1195 3.8618 25 6 7.8186 9.4348 4.1950 26 6 8.8376 10.1179 3.5579 27 6 9.5955 9.4843 2.5911 28 6 9.3343 8.1675 2.2611 29 6 3.9484 2.7252 -0.7051 30 1 3.2299 3.5449 -0.7140 31 8 4.5190 2.4719 -1.9905 32 6 3.7664 3.0138 -3.0777 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 -0.3633 0.5139 0.8900 36 1 1.8933 -0.5138 -0.8901 37 1 1.8934 -0.5139 0.8899 38 1 4.4822 1.3046 1.9402 39 1 3.2994 2.6802 1.8406 40 1 4.5301 4.8748 0.7682 41 1 5.8869 6.2065 2.6785 42 1 6.5524 6.6281 1.0823 43 1 11.2317 4.4644 3.7304 44 1 6.7555 7.5871 4.3564 45 1 7.2266 9.9299 4.9507 46 1 9.0417 11.1466 3.8158 47 1 10.3919 10.0178 2.0936 48 1 9.9264 7.6724 1.5056 49 1 3.6936 4.0956 -2.9657 50 1 4.2649 2.7782 -4.0179 51 1 2.7661 2.5805 -3.0786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356789374.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:15 Heat of formation + Delta-G solvation = -84.468282 kcal Electronic energy + Delta-G solvation = -30569.998719 eV Core-core repulsion = 26435.196368 eV Total energy + Delta-G solvation = -4134.802351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.29950 -38.77413 -38.05288 -37.39765 -35.81446 -33.93364 -32.71551 -31.40786 -30.99643 -29.97961 -28.77072 -27.18895 -25.77950 -24.61866 -24.07318 -23.02194 -22.51149 -21.58227 -20.19799 -20.18362 -19.15271 -17.55798 -17.02796 -16.50478 -16.18748 -15.97772 -15.69689 -15.60604 -15.22172 -14.76155 -14.38698 -14.29260 -14.05180 -13.90661 -13.74094 -13.29746 -13.09443 -12.96334 -12.73143 -12.55631 -12.33867 -12.09118 -11.99165 -11.88942 -11.72819 -11.60149 -11.53496 -11.30665 -11.28179 -10.84701 -10.82611 -10.67002 -10.56296 -10.24524 -10.13981 -9.98071 -9.48229 -9.41063 -9.10261 -8.80055 -8.53281 -8.28201 -8.01750 -7.59103 -5.89046 -3.88224 2.31622 2.37179 3.12923 3.41278 3.44636 3.47122 3.52707 3.81259 3.92340 4.35711 4.40860 4.54841 4.70956 4.77421 4.77907 4.84442 4.91696 5.08417 5.11245 5.23513 5.28401 5.35421 5.42193 5.49822 5.50788 5.61435 5.68180 5.70456 5.75801 5.81095 5.86152 5.86967 5.93025 6.12443 6.17089 6.22055 6.32337 6.44065 6.56688 6.82258 6.85000 6.93443 6.96208 7.06844 7.14621 7.33659 7.47924 7.56385 7.91944 7.97656 8.07099 8.12372 8.42417 9.09176 9.11772 9.72429 11.21017 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011512 B = 0.002640 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.637735 B =10603.531483 C =11726.659827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.375 6.375 4 C 0.051 3.949 5 H 0.097 0.903 6 C -0.166 4.166 7 C 0.138 3.862 8 H 0.124 0.876 9 N -0.737 5.737 10 C 0.514 3.486 11 O -0.491 6.491 12 C -0.121 4.121 13 C 0.080 3.920 14 H 0.071 0.929 15 C -0.491 4.491 16 H 0.050 0.950 17 C 0.076 3.924 18 N -0.881 5.881 19 Si 0.884 3.116 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.279 1.279 23 C -0.022 4.022 24 C -0.114 4.114 25 C -0.133 4.133 26 C -0.155 4.155 27 C -0.129 4.129 28 C -0.118 4.118 29 C 0.059 3.941 30 H 0.097 0.903 31 O -0.372 6.372 32 C 0.030 3.970 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.393 0.607 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.259 0.741 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.114 0.886 49 H 0.043 0.957 50 H 0.084 0.916 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.036 -2.174 -9.568 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.294 6.294 4 C -0.008 4.008 5 H 0.115 0.885 6 C -0.205 4.205 7 C 0.032 3.968 8 H 0.142 0.858 9 N -0.392 5.392 10 C 0.301 3.699 11 O -0.361 6.361 12 C -0.162 4.162 13 C 0.061 3.939 14 H 0.089 0.911 15 C -0.529 4.529 16 H 0.068 0.932 17 C -0.127 4.127 18 N -0.518 5.518 19 Si 0.713 3.287 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.022 4.022 24 C -0.132 4.132 25 C -0.151 4.151 26 C -0.174 4.174 27 C -0.147 4.147 28 C -0.137 4.137 29 C 0.000 4.000 30 H 0.115 0.885 31 O -0.290 6.290 32 C -0.066 4.066 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.226 0.774 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.131 0.869 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.132 0.868 49 H 0.061 0.939 50 H 0.103 0.897 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.082 -2.790 -9.487 18.879 hybrid contribution -0.278 -0.294 0.995 1.074 sum -16.360 -3.084 -8.493 18.689 Atomic orbital electron populations 1.21749 0.93859 1.02193 1.03045 1.22520 0.95441 0.83962 1.00195 1.87904 1.20421 1.26453 1.94630 1.24118 0.81155 0.98814 0.96687 0.88471 1.23723 0.99014 1.00824 0.96961 1.22193 0.98120 0.85026 0.91498 0.85828 1.46087 1.18556 1.10223 1.64302 1.20956 0.80695 0.91662 0.76624 1.90768 1.42918 1.50848 1.51563 1.21771 1.02571 0.91711 1.00121 1.17808 0.90610 0.87658 0.97795 0.91127 1.20636 0.93577 1.29831 1.08810 0.93194 1.24813 0.96130 0.95287 0.96486 1.69901 0.99878 1.45518 1.36478 0.86785 0.76952 0.80346 0.84653 1.20377 1.21436 1.20449 1.20747 0.92560 0.96304 0.92612 1.20953 1.00584 0.93656 0.97988 1.20979 0.98551 0.95440 1.00111 1.20793 0.98196 0.99130 0.99239 1.20979 0.99503 0.95537 0.98667 1.21096 0.98374 0.93552 1.00635 1.24609 0.95407 0.96897 0.83117 0.88486 1.87980 1.49715 1.77347 1.13924 1.22803 0.96016 0.97737 0.90067 0.91993 0.91178 0.91814 0.93375 0.93189 0.89751 0.88647 0.77385 0.90456 0.91586 0.93128 0.86851 0.87695 0.87844 0.87672 0.86843 0.93875 0.89715 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.48 6.50 37.16 0.24 0.72 16 3 O -0.38 -4.16 10.35 -35.23 -0.36 -4.53 16 4 C 0.05 0.58 4.14 -25.92 -0.11 0.47 16 5 H 0.10 1.05 7.87 -51.93 -0.41 0.64 16 6 C -0.17 -2.06 7.71 -25.92 -0.20 -2.26 16 7 C 0.14 1.96 4.07 -67.12 -0.27 1.68 16 8 H 0.12 2.07 7.46 -51.93 -0.39 1.69 16 9 N -0.74 -10.97 5.35 -53.02 -0.28 -11.25 16 10 C 0.51 10.18 7.58 -10.98 -0.08 10.09 16 11 O -0.49 -12.25 14.58 5.56 0.08 -12.17 16 12 C -0.12 -2.33 4.95 -27.88 -0.14 -2.47 16 13 C 0.08 1.92 1.64 -92.92 -0.15 1.76 16 14 H 0.07 1.95 7.03 -51.93 -0.36 1.59 16 15 C -0.49 -13.22 6.35 -34.44 -0.22 -13.44 16 16 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 17 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 18 N -0.88 -26.05 12.89 55.43 0.71 -25.34 16 19 Si 0.88 22.26 29.54 -169.99 -5.02 17.24 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 C -0.02 -0.48 4.77 -104.63 -0.50 -0.98 16 24 C -0.11 -2.31 8.86 -39.59 -0.35 -2.66 16 25 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 26 C -0.16 -2.73 10.05 -39.58 -0.40 -3.12 16 27 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 28 C -0.12 -2.52 9.67 -39.58 -0.38 -2.90 16 29 C 0.06 0.70 3.89 -25.92 -0.10 0.60 16 30 H 0.10 1.02 7.85 -51.93 -0.41 0.62 16 31 O -0.37 -4.71 10.71 -35.23 -0.38 -5.09 16 32 C 0.03 0.28 10.85 101.05 1.10 1.38 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.39 4.56 8.73 -40.82 -0.36 4.21 16 41 H 0.08 1.36 7.80 -51.93 -0.40 0.95 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.11 2.21 7.77 -52.49 -0.41 1.81 16 45 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 46 H 0.10 1.52 8.06 -52.49 -0.42 1.09 16 47 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 48 H 0.11 2.44 7.95 -52.48 -0.42 2.02 16 49 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 423.94 15.07 6.39 6.39 Total: -1.00 -33.25 423.94 -9.56 -42.81 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -8.62 Total: 7.26 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -2.08 Total: -15.33 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.43 Total: -36.59 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.66 Total: -21.78 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -33.25 -9.56 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356789374.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.655 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds