Wall clock time and date at job start Wed Apr 1 2020 05:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 119.99831 * 2 1 4 4 C 1.52997 * 109.47411 * 90.00211 * 3 2 1 5 5 O 1.42904 * 109.54354 * 64.99698 * 4 3 2 6 6 C 1.53177 * 109.54417 * 304.81948 * 4 3 2 7 7 C 1.53103 * 109.16059 * 183.24032 * 6 4 3 8 8 O 1.42905 * 109.48341 * 57.47703 * 7 6 4 9 9 C 1.42907 * 114.09561 * 298.88421 * 8 7 6 10 10 C 1.53094 * 109.41401 * 61.16406 * 9 8 7 11 11 C 1.34779 * 119.99865 * 179.97438 * 2 1 3 12 12 O 1.21284 * 119.99917 * 179.97438 * 11 2 1 13 13 C 1.50695 * 119.99761 * 359.97438 * 11 2 1 14 14 C 1.53004 * 109.46733 * 180.02562 * 13 11 2 15 15 H 1.08998 * 109.47621 * 54.99637 * 14 13 11 16 16 C 1.50702 * 109.47097 * 294.99704 * 14 13 11 17 17 H 1.08006 * 119.99736 * 325.13025 * 16 14 13 18 18 C 1.37873 * 120.00082 * 145.12479 * 16 14 13 19 19 N 1.31519 * 119.99981 * 184.98673 * 18 16 14 20 20 Si 1.86805 * 120.00066 * 4.99509 * 18 16 14 21 21 H 1.48501 * 109.47322 * 84.72597 * 20 18 16 22 22 H 1.48492 * 109.46859 * 204.72532 * 20 18 16 23 23 H 1.48500 * 109.46836 * 324.72740 * 20 18 16 24 24 C 1.50700 * 109.47243 * 175.00249 * 14 13 11 25 25 C 1.38236 * 120.00287 * 64.68773 * 24 14 13 26 26 C 1.38232 * 120.00002 * 179.79720 * 25 24 14 27 27 C 1.38232 * 120.00104 * 0.43354 * 26 25 24 28 28 C 1.38232 * 120.00053 * 359.81750 * 27 26 25 29 29 C 1.38235 * 120.00109 * 359.97438 * 28 27 26 30 30 H 1.08995 * 109.47237 * 90.00122 * 1 2 3 31 31 H 1.08996 * 109.47002 * 210.00482 * 1 2 3 32 32 H 1.09007 * 109.47133 * 330.00220 * 1 2 3 33 33 H 1.09001 * 109.46992 * 209.99865 * 3 2 1 34 34 H 1.08997 * 109.47429 * 329.99568 * 3 2 1 35 35 H 0.96696 * 113.99909 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.52293 * 303.06060 * 6 4 3 37 37 H 1.09004 * 109.51992 * 63.24414 * 6 4 3 38 38 H 1.09004 * 109.40379 * 297.49432 * 7 6 4 39 39 H 1.09001 * 109.48775 * 177.50979 * 7 6 4 40 40 H 1.08991 * 109.48264 * 301.17933 * 9 8 7 41 41 H 1.08996 * 109.48550 * 181.14942 * 9 8 7 42 42 H 1.08992 * 109.52388 * 182.48465 * 10 9 8 43 43 H 1.09002 * 109.57436 * 62.32432 * 10 9 8 44 44 H 1.09003 * 109.47397 * 299.99571 * 13 11 2 45 45 H 1.08991 * 109.47419 * 60.00230 * 13 11 2 46 46 H 0.97000 * 119.99819 * 180.02562 * 19 18 16 47 47 H 1.08001 * 119.99738 * 359.97438 * 25 24 14 48 48 H 1.08004 * 120.00150 * 180.27419 * 26 25 24 49 49 H 1.08000 * 120.00108 * 179.84034 * 27 26 25 50 50 H 1.07999 * 120.00435 * 179.97438 * 28 27 26 51 51 H 1.07996 * 120.00329 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4424 5 8 3.3209 0.7735 2.0829 6 6 1.1231 1.7779 2.2004 7 6 1.3785 2.2979 3.6176 8 8 2.0124 3.5768 3.5490 9 6 3.2821 3.5643 2.8932 10 6 3.1029 3.0973 1.4463 11 6 2.1389 -1.1672 0.0005 12 8 3.3517 -1.1672 0.0001 13 6 1.3853 -2.4722 0.0017 14 6 2.3796 -3.6352 0.0027 15 1 3.0638 -3.5276 0.8444 16 6 3.1624 -3.6280 -1.2850 17 1 2.6865 -3.3206 -2.2045 18 6 4.4861 -4.0137 -1.2893 19 7 5.1963 -3.9145 -2.3918 20 14 5.2706 -4.6774 0.2707 21 1 4.9892 -6.1309 0.3867 22 1 6.7386 -4.4602 0.2174 23 1 4.7076 -3.9687 1.4480 24 6 1.6302 -4.9367 0.1277 25 6 0.7721 -5.3396 -0.8784 26 6 0.0880 -6.5354 -0.7657 27 6 0.2551 -7.3241 0.3572 28 6 1.1092 -6.9188 1.3656 29 6 1.7967 -5.7250 1.2510 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3634 0.8901 0.5138 33 1 3.1499 1.1384 -0.5138 34 1 1.6085 2.0283 -0.5139 35 1 3.5253 0.9916 3.0024 36 1 0.4426 2.4539 1.6828 37 1 0.6814 0.7826 2.2502 38 1 2.0254 1.5995 4.1485 39 1 0.4304 2.3900 4.1475 40 1 3.9538 2.8826 3.4147 41 1 3.7053 4.5687 2.9012 42 1 4.0756 3.0448 0.9574 43 1 2.4641 3.8006 0.9120 44 1 0.7590 -2.5294 0.8920 45 1 0.7584 -2.5306 -0.8879 46 1 6.1275 -4.1863 -2.3949 47 1 0.6384 -4.7213 -1.7538 48 1 -0.5791 -6.8523 -1.5537 49 1 -0.2814 -8.2572 0.4464 50 1 1.2395 -7.5348 2.2431 51 1 2.4637 -5.4081 2.0390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356937689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:26 Heat of formation + Delta-G solvation = -123.837957 kcal Electronic energy + Delta-G solvation = -32277.343988 eV Core-core repulsion = 28140.834441 eV Total energy + Delta-G solvation = -4136.509548 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.47202 -40.48313 -39.72744 -37.55544 -36.20923 -35.74561 -33.75162 -33.09827 -32.14682 -31.61299 -30.67060 -29.26336 -27.89099 -26.75384 -24.68584 -24.53315 -23.62548 -23.20157 -21.37997 -20.89231 -19.73905 -19.03439 -18.51635 -17.95636 -17.21438 -17.14263 -16.99261 -16.74369 -16.31438 -16.17302 -15.86248 -15.58384 -15.45932 -15.29161 -15.12172 -14.73321 -14.30426 -14.21423 -14.04029 -13.80086 -13.60832 -13.52070 -13.30444 -13.17814 -13.02711 -12.94184 -12.79036 -12.74024 -12.62164 -12.41769 -12.29936 -12.02394 -11.89117 -11.80113 -11.46208 -11.38428 -11.00995 -10.83275 -10.67102 -10.61585 -10.28622 -9.63966 -9.37678 -9.30822 -8.22748 -6.17806 0.66786 0.72435 1.26850 1.31323 1.37854 2.09300 2.24683 2.38847 2.88011 3.07693 3.20961 3.24735 3.71358 3.72270 3.75852 3.95332 3.97299 4.12780 4.17278 4.28965 4.30599 4.31282 4.38025 4.45509 4.46866 4.50226 4.57378 4.61840 4.66960 4.73001 4.75572 4.79789 4.83150 4.87501 4.90775 4.95761 5.03502 5.09058 5.13786 5.16074 5.22013 5.37905 5.40536 5.69694 5.75554 5.79797 5.83639 6.02172 6.17048 6.32649 6.35764 6.65911 6.79284 6.80387 7.45278 7.67777 8.94855 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.003452 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.036282 B = 8108.706160 C = 8941.436164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.621 5.621 3 C 0.129 3.871 4 C 0.113 3.887 5 O -0.562 6.562 6 C -0.171 4.171 7 C 0.055 3.945 8 O -0.393 6.393 9 C 0.059 3.941 10 C -0.175 4.175 11 C 0.509 3.491 12 O -0.543 6.543 13 C -0.105 4.105 14 C 0.050 3.950 15 H 0.033 0.967 16 C -0.458 4.458 17 H 0.033 0.967 18 C 0.026 3.974 19 N -0.953 5.953 20 Si 0.922 3.078 21 H -0.265 1.265 22 H -0.300 1.300 23 H -0.255 1.255 24 C -0.063 4.063 25 C -0.119 4.119 26 C -0.123 4.123 27 C -0.140 4.140 28 C -0.122 4.122 29 C -0.158 4.158 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.116 0.884 35 H 0.369 0.631 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.115 0.885 40 H 0.051 0.949 41 H 0.113 0.887 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.257 0.743 47 H 0.109 0.891 48 H 0.141 0.859 49 H 0.148 0.852 50 H 0.141 0.859 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.514 10.865 12.186 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.356 5.356 3 C 0.006 3.994 4 C 0.071 3.929 5 O -0.369 6.369 6 C -0.208 4.208 7 C -0.021 4.021 8 O -0.312 6.312 9 C -0.018 4.018 10 C -0.214 4.214 11 C 0.297 3.703 12 O -0.418 6.418 13 C -0.145 4.145 14 C 0.031 3.969 15 H 0.051 0.949 16 C -0.496 4.496 17 H 0.051 0.949 18 C -0.170 4.170 19 N -0.595 5.595 20 Si 0.749 3.251 21 H -0.190 1.190 22 H -0.227 1.227 23 H -0.180 1.180 24 C -0.063 4.063 25 C -0.137 4.137 26 C -0.141 4.141 27 C -0.158 4.158 28 C -0.140 4.140 29 C -0.177 4.177 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.066 0.934 34 H 0.134 0.866 35 H 0.217 0.783 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.133 0.867 40 H 0.069 0.931 41 H 0.131 0.869 42 H 0.092 0.908 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.127 0.873 48 H 0.159 0.841 49 H 0.166 0.834 50 H 0.158 0.842 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.814 10.703 11.594 21.643 hybrid contribution 1.509 -0.221 0.398 1.576 sum -13.305 10.483 11.992 20.754 Atomic orbital electron populations 1.22121 0.77700 1.04602 1.02724 1.47805 1.07751 1.04779 1.75271 1.21414 0.97377 0.86034 0.94620 1.21795 0.89734 0.88066 0.93265 1.86910 1.68823 1.51530 1.29601 1.22868 0.97551 1.03143 0.97281 1.22719 0.98953 0.84565 0.95857 1.87932 1.34169 1.30837 1.78288 1.22648 0.85089 1.03231 0.90795 1.22771 1.02718 0.96654 0.99238 1.20927 0.87924 0.86093 0.75323 1.90726 1.16095 1.87216 1.47767 1.21532 0.98221 0.91553 1.03157 1.18134 0.93223 0.89084 0.96486 0.94859 1.20773 0.94808 1.40908 0.93074 0.94874 1.25548 0.97864 0.95826 0.97791 1.70030 1.08689 1.51281 1.29508 0.86136 0.76911 0.79253 0.82801 1.19008 1.22716 1.17957 1.20526 0.94536 0.97771 0.93511 1.21009 0.97125 0.97595 0.97988 1.21413 0.99807 0.94131 0.98704 1.21344 0.99767 1.00676 0.93985 1.21336 0.96862 0.95733 1.00099 1.21201 1.01625 0.96844 0.98000 0.92163 0.90330 0.88491 0.93384 0.86570 0.78283 0.88580 0.89963 0.93339 0.86721 0.93086 0.86863 0.90848 0.88589 0.88578 0.89266 0.93386 0.87253 0.84122 0.83419 0.84165 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 9.07 127.77 1.16 2.50 16 2 N -0.62 -18.61 2.48 -846.77 -2.10 -20.71 16 3 C 0.13 3.55 4.76 86.38 0.41 3.96 16 4 C 0.11 2.63 0.89 -10.68 -0.01 2.62 16 5 O -0.56 -17.44 11.75 -141.74 -1.67 -19.10 16 6 C -0.17 -2.93 3.71 30.69 0.11 -2.81 16 7 C 0.06 0.87 6.59 72.02 0.47 1.35 16 8 O -0.39 -7.21 10.77 -148.98 -1.60 -8.82 16 9 C 0.06 0.98 6.59 72.01 0.47 1.45 16 10 C -0.18 -3.29 5.15 30.69 0.16 -3.13 16 11 C 0.51 21.21 7.05 87.66 0.62 21.83 16 12 O -0.54 -29.19 13.78 4.20 0.06 -29.14 16 13 C -0.10 -4.05 3.51 29.85 0.10 -3.95 16 14 C 0.05 2.39 1.21 -12.28 -0.01 2.38 16 15 H 0.03 1.75 4.70 -2.39 -0.01 1.74 16 16 C -0.46 -26.85 6.87 25.60 0.18 -26.67 16 17 H 0.03 2.13 8.06 -2.91 -0.02 2.10 16 18 C 0.03 1.62 5.47 84.65 0.46 2.08 16 19 N -0.95 -64.07 13.96 21.45 0.30 -63.77 16 20 Si 0.92 50.19 27.15 68.60 1.86 52.05 16 21 H -0.26 -13.64 7.11 99.48 0.71 -12.94 16 22 H -0.30 -16.48 7.11 99.48 0.71 -15.78 16 23 H -0.25 -13.47 6.06 99.48 0.60 -12.87 16 24 C -0.06 -2.64 4.55 -19.86 -0.09 -2.73 16 25 C -0.12 -4.55 8.87 22.27 0.20 -4.35 16 26 C -0.12 -3.79 10.05 22.27 0.22 -3.56 16 27 C -0.14 -3.93 10.05 22.27 0.22 -3.70 16 28 C -0.12 -3.78 10.05 22.27 0.22 -3.55 16 29 C -0.16 -6.04 9.43 22.27 0.21 -5.83 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.41 6.44 -2.39 -0.02 1.40 16 32 H 0.10 1.24 5.98 -2.38 -0.01 1.22 16 33 H 0.05 1.75 7.42 -2.39 -0.02 1.73 16 34 H 0.12 2.28 8.07 -2.39 -0.02 2.26 16 35 H 0.37 8.92 5.97 -74.06 -0.44 8.48 16 36 H 0.10 1.31 7.68 -2.39 -0.02 1.29 16 37 H 0.08 1.53 6.42 -2.38 -0.02 1.51 16 38 H 0.05 0.79 6.93 -2.38 -0.02 0.77 16 39 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.05 0.85 6.93 -2.39 -0.02 0.83 16 41 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.10 3.06 7.40 -2.39 -0.02 3.04 16 45 H 0.09 3.24 7.82 -2.39 -0.02 3.22 16 46 H 0.26 16.52 8.31 -92.71 -0.77 15.75 16 47 H 0.11 4.29 7.80 -2.91 -0.02 4.26 16 48 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 49 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 50 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 51 H 0.10 3.98 7.95 -2.91 -0.02 3.96 16 Total: -1.00 -85.30 392.79 2.35 -82.95 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.39 Total: 28.67 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 5.12 Total: -22.13 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -1.80 Total: -84.48 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -3.21 Total: -57.06 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 1.86 Total: 52.05 kcal Total: -85.30 2.35 -82.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356937689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.892 kcal (2) G-P(sol) polarization free energy of solvation -85.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds