Wall clock time and date at job start Wed Apr 1 2020 05:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 120.00049 * 2 1 4 4 C 1.53001 * 109.46992 * 89.99720 * 3 2 1 5 5 O 1.42902 * 109.54346 * 65.00113 * 4 3 2 6 6 C 1.53172 * 109.54470 * 304.82562 * 4 3 2 7 7 C 1.53105 * 109.15627 * 183.24340 * 6 4 3 8 8 O 1.42898 * 109.48898 * 57.46939 * 7 6 4 9 9 C 1.42903 * 114.09985 * 298.89119 * 8 7 6 10 10 C 1.53088 * 109.41526 * 61.15454 * 9 8 7 11 11 C 1.34784 * 119.99749 * 179.97438 * 2 1 3 12 12 O 1.21278 * 119.99587 * 180.02562 * 11 2 1 13 13 C 1.50696 * 119.99967 * 0.02562 * 11 2 1 14 14 C 1.52998 * 109.46954 * 179.97438 * 13 11 2 15 15 H 1.08998 * 109.47394 * 304.99879 * 14 13 11 16 16 C 1.50707 * 109.47323 * 64.99761 * 14 13 11 17 17 H 1.07997 * 119.99680 * 29.58443 * 16 14 13 18 18 C 1.37874 * 119.99932 * 209.58921 * 16 14 13 19 19 N 1.31509 * 120.00361 * 4.94429 * 18 16 14 20 20 Si 1.86801 * 119.99683 * 184.94180 * 18 16 14 21 21 H 1.48497 * 109.47389 * 59.99951 * 20 18 16 22 22 H 1.48499 * 109.47264 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47109 * 299.99940 * 20 18 16 24 24 C 1.50702 * 109.47268 * 184.99598 * 14 13 11 25 25 C 1.38232 * 120.00266 * 296.77363 * 24 14 13 26 26 C 1.38233 * 120.00229 * 179.78697 * 25 24 14 27 27 C 1.38239 * 119.99671 * 0.44040 * 26 25 24 28 28 C 1.38237 * 120.00129 * 359.81505 * 27 26 25 29 29 C 1.38231 * 119.99740 * 359.97437 * 28 27 26 30 30 H 1.09007 * 109.46801 * 90.00472 * 1 2 3 31 31 H 1.09005 * 109.47143 * 209.99778 * 1 2 3 32 32 H 1.08996 * 109.47375 * 329.99842 * 1 2 3 33 33 H 1.08993 * 109.46954 * 209.99525 * 3 2 1 34 34 H 1.08991 * 109.46865 * 330.00051 * 3 2 1 35 35 H 0.96696 * 114.00129 * 179.97438 * 5 4 3 36 36 H 1.09006 * 109.52323 * 303.05561 * 6 4 3 37 37 H 1.08995 * 109.52743 * 63.24442 * 6 4 3 38 38 H 1.09002 * 109.40422 * 297.48745 * 7 6 4 39 39 H 1.08998 * 109.49175 * 177.50642 * 7 6 4 40 40 H 1.08998 * 109.47901 * 301.17176 * 9 8 7 41 41 H 1.08999 * 109.48463 * 181.14751 * 9 8 7 42 42 H 1.08997 * 109.52556 * 182.48365 * 10 9 8 43 43 H 1.09010 * 109.56966 * 62.32894 * 10 9 8 44 44 H 1.09004 * 109.47100 * 299.99317 * 13 11 2 45 45 H 1.08995 * 109.47497 * 59.99905 * 13 11 2 46 46 H 0.96997 * 120.00139 * 180.02562 * 19 18 16 47 47 H 1.08006 * 119.99701 * 359.97438 * 25 24 14 48 48 H 1.07994 * 120.00475 * 180.27498 * 26 25 24 49 49 H 1.08000 * 119.99773 * 179.83466 * 27 26 25 50 50 H 1.07997 * 120.00064 * 180.02562 * 28 27 26 51 51 H 1.08009 * 119.99775 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 8 3.3208 0.7734 2.0830 6 6 1.1230 1.7777 2.2003 7 6 1.3784 2.2978 3.6175 8 8 2.0123 3.5767 3.5490 9 6 3.2819 3.5642 2.8933 10 6 3.1029 3.0972 1.4464 11 6 2.1389 -1.1673 0.0005 12 8 3.3517 -1.1673 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3796 -3.6353 0.0005 15 1 3.0637 -3.5284 -0.8413 16 6 3.1625 -3.6269 1.2882 17 1 2.7137 -3.2385 2.1905 18 6 4.4517 -4.1150 1.3144 19 7 5.0328 -4.4975 0.1984 20 14 5.3730 -4.2328 2.9351 21 1 4.6324 -5.1261 3.8617 22 1 6.7303 -4.7848 2.6939 23 1 5.4890 -2.8806 3.5380 24 6 1.6302 -4.9369 -0.1232 25 6 0.7492 -5.3243 0.8691 26 6 0.0585 -6.5161 0.7535 27 6 0.2556 -7.3249 -0.3502 28 6 1.1406 -6.9400 -1.3400 29 6 1.8279 -5.7461 -1.2264 30 1 -0.3633 -0.0001 -1.0278 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 3.1499 1.1383 -0.5137 34 1 1.6085 2.0283 -0.5138 35 1 3.5258 0.9920 3.0024 36 1 0.4425 2.4539 1.6827 37 1 0.6813 0.7826 2.2501 38 1 2.0252 1.5994 4.1485 39 1 0.4304 2.3899 4.1475 40 1 3.9537 2.8824 3.4148 41 1 3.7052 4.5686 2.9014 42 1 4.0756 3.0447 0.9575 43 1 2.4641 3.8006 0.9121 44 1 0.7584 -2.5299 0.8904 45 1 0.7590 -2.5303 -0.8896 46 1 5.9396 -4.8412 0.2168 47 1 0.5983 -4.6943 1.7333 48 1 -0.6331 -6.8167 1.5265 49 1 -0.2820 -8.2573 -0.4392 50 1 1.2943 -7.5717 -2.2024 51 1 2.5197 -5.4456 -1.9995 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356937703.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:31 Heat of formation + Delta-G solvation = -100.811294 kcal Electronic energy + Delta-G solvation = -32358.359573 eV Core-core repulsion = 28222.848537 eV Total energy + Delta-G solvation = -4135.511037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.39096 -38.94500 -38.15225 -36.41813 -34.77668 -33.86501 -32.07564 -31.37126 -31.27664 -29.98058 -29.19634 -27.92789 -26.11601 -25.19356 -23.80623 -23.23613 -22.23549 -21.55142 -20.06224 -19.63193 -18.25863 -17.46693 -16.57954 -16.28953 -16.15439 -16.02788 -15.59731 -15.46722 -14.98333 -14.68617 -14.47119 -14.26831 -14.06692 -13.98817 -13.78659 -13.00045 -12.73091 -12.66481 -12.47859 -12.34618 -12.25301 -12.10319 -11.88049 -11.81010 -11.65238 -11.57633 -11.50699 -11.46344 -11.28865 -10.79740 -10.63268 -10.53302 -10.49359 -10.22899 -9.98219 -9.75941 -9.70155 -9.35172 -9.00554 -8.62782 -8.24269 -8.06221 -8.01782 -7.57706 -5.84192 -3.82137 2.31651 2.37647 3.44104 3.46949 3.50185 3.50686 3.65206 3.73443 4.28614 4.59105 4.62404 4.65114 4.68512 4.77694 4.78416 4.97345 5.10620 5.25901 5.34417 5.44216 5.46430 5.49715 5.52740 5.59860 5.68426 5.69469 5.74611 5.76417 5.80280 5.84958 5.87230 5.95543 6.02566 6.13535 6.17505 6.29096 6.33236 6.44175 6.58294 6.83815 6.93516 6.96269 7.02588 7.10403 7.33705 7.49530 7.58455 7.84705 7.96133 7.98942 8.07652 8.14985 8.47341 9.15878 9.27401 9.78108 11.26161 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.003593 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.617852 B = 7791.933549 C = 8896.242380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.632 5.632 3 C 0.136 3.864 4 C 0.115 3.885 5 O -0.522 6.522 6 C -0.179 4.179 7 C 0.056 3.944 8 O -0.385 6.385 9 C 0.058 3.942 10 C -0.181 4.181 11 C 0.514 3.486 12 O -0.471 6.471 13 C -0.117 4.117 14 C 0.079 3.921 15 H 0.071 0.929 16 C -0.483 4.483 17 H 0.048 0.952 18 C 0.077 3.923 19 N -0.883 5.883 20 Si 0.884 3.116 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.021 4.021 25 C -0.114 4.114 26 C -0.133 4.133 27 C -0.156 4.156 28 C -0.129 4.129 29 C -0.120 4.120 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.359 0.641 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.060 0.940 46 H 0.258 0.742 47 H 0.112 0.888 48 H 0.105 0.895 49 H 0.103 0.897 50 H 0.105 0.895 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.925 12.468 1.044 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.370 5.370 3 C 0.013 3.987 4 C 0.072 3.928 5 O -0.326 6.326 6 C -0.217 4.217 7 C -0.021 4.021 8 O -0.304 6.304 9 C -0.019 4.019 10 C -0.220 4.220 11 C 0.302 3.698 12 O -0.340 6.340 13 C -0.158 4.158 14 C 0.060 3.940 15 H 0.089 0.911 16 C -0.520 4.520 17 H 0.067 0.933 18 C -0.125 4.125 19 N -0.520 5.520 20 Si 0.713 3.287 21 H -0.206 1.206 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.022 4.022 25 C -0.133 4.133 26 C -0.151 4.151 27 C -0.174 4.174 28 C -0.147 4.147 29 C -0.138 4.138 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.206 0.794 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.130 0.870 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.123 0.877 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.144 12.224 0.441 15.891 hybrid contribution 0.616 -0.120 1.470 1.599 sum -9.528 12.103 1.911 15.522 Atomic orbital electron populations 1.21783 0.81002 1.02622 1.01052 1.47947 1.05775 1.05727 1.77576 1.21184 0.98465 0.85966 0.93135 1.21701 0.88738 0.87764 0.94600 1.86988 1.67529 1.49576 1.28547 1.22942 0.98951 1.02948 0.96875 1.22634 0.98170 0.84959 0.96346 1.87926 1.33820 1.30345 1.78260 1.22582 0.85367 1.02226 0.91729 1.22834 1.03060 0.97750 0.98318 1.20788 0.88622 0.84396 0.76031 1.90772 1.13337 1.85979 1.43896 1.21764 0.99308 0.93954 1.00730 1.17838 0.91028 0.84277 1.00865 0.91071 1.20581 0.97677 1.40285 0.93485 0.93338 1.24778 0.97129 0.95075 0.95540 1.69890 1.13519 1.42936 1.25682 0.86786 0.78977 0.78105 0.84841 1.20649 1.21592 1.20308 1.20793 0.91423 0.98893 0.91081 1.20942 0.97172 0.96329 0.98813 1.20973 1.00688 0.95685 0.97729 1.20788 1.01108 0.99665 0.95869 1.20983 0.97923 0.97077 0.98686 1.21104 0.99257 0.94758 0.98663 0.93487 0.91035 0.91902 0.89349 0.90366 0.79421 0.90603 0.89323 0.92991 0.88641 0.92958 0.88602 0.89741 0.90316 0.90929 0.92110 0.93246 0.86953 0.87717 0.87848 0.87676 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 9.07 59.85 0.54 1.42 16 2 N -0.63 -9.66 2.48 -181.57 -0.45 -10.11 16 3 C 0.14 1.88 4.76 -4.04 -0.02 1.86 16 4 C 0.11 1.46 0.89 -90.44 -0.08 1.38 16 5 O -0.52 -8.73 11.75 -42.87 -0.50 -9.23 16 6 C -0.18 -1.93 3.71 -26.59 -0.10 -2.03 16 7 C 0.06 0.57 6.59 37.21 0.25 0.81 16 8 O -0.38 -4.32 10.77 -35.23 -0.38 -4.70 16 9 C 0.06 0.57 6.59 37.20 0.25 0.81 16 10 C -0.18 -1.88 5.15 -26.60 -0.14 -2.02 16 11 C 0.51 10.50 7.05 -10.98 -0.08 10.42 16 12 O -0.47 -12.02 13.78 -2.08 -0.03 -12.05 16 13 C -0.12 -2.32 3.50 -27.89 -0.10 -2.42 16 14 C 0.08 1.91 1.69 -92.92 -0.16 1.76 16 15 H 0.07 2.00 6.95 -51.93 -0.36 1.64 16 16 C -0.48 -13.16 6.38 -34.44 -0.22 -13.38 16 17 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 18 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 19 N -0.88 -26.45 12.85 55.43 0.71 -25.74 16 20 Si 0.88 22.63 29.54 -169.99 -5.02 17.61 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 24 C -0.02 -0.47 4.77 -104.62 -0.50 -0.97 16 25 C -0.11 -2.34 8.86 -39.59 -0.35 -2.69 16 26 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 27 C -0.16 -2.75 10.05 -39.58 -0.40 -3.15 16 28 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 29 C -0.12 -2.57 9.67 -39.58 -0.38 -2.95 16 30 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 32 H 0.06 0.55 5.98 -51.93 -0.31 0.24 16 33 H 0.09 1.46 7.42 -51.93 -0.39 1.07 16 34 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.36 4.98 5.97 45.56 0.27 5.25 16 36 H 0.08 0.72 7.69 -51.93 -0.40 0.32 16 37 H 0.09 1.05 6.42 -51.93 -0.33 0.72 16 38 H 0.05 0.54 6.93 -51.93 -0.36 0.18 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.51 6.93 -51.93 -0.36 0.15 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 44 H 0.07 1.34 7.02 -51.93 -0.36 0.97 16 45 H 0.06 1.07 8.11 -51.93 -0.42 0.65 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 47 H 0.11 2.21 7.76 -52.48 -0.41 1.81 16 48 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 49 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 50 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 51 H 0.11 2.47 7.95 -52.48 -0.42 2.05 16 LS Contribution 397.38 15.07 5.99 5.99 Total: -1.00 -34.48 397.38 -9.59 -44.07 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -7.53 Total: 8.78 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -2.38 Total: -14.61 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.26 Total: -35.85 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.91 Total: -25.99 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.48 -9.59 -44.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356937703.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.743 kcal (2) G-P(sol) polarization free energy of solvation -34.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds