Wall clock time and date at job start Wed Apr 1 2020 04:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00386 * 2 1 4 4 C 1.52997 * 109.47864 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.50944 * 304.89981 * 4 3 2 6 6 C 1.52875 * 109.62618 * 184.90881 * 4 3 2 7 7 N 1.47155 * 108.60489 * 187.89646 * 6 4 3 8 8 C 1.34774 * 120.97952 * 230.49421 * 7 6 4 9 9 O 1.21286 * 120.00256 * 359.72534 * 8 7 6 10 10 C 1.50702 * 119.99902 * 179.71929 * 8 7 6 11 11 C 1.53007 * 109.47103 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.46622 * 304.99744 * 11 10 8 13 13 C 1.50701 * 109.47241 * 64.99932 * 11 10 8 14 14 H 1.07998 * 119.99732 * 234.68001 * 13 11 10 15 15 C 1.37878 * 119.99875 * 54.67928 * 13 11 10 16 16 N 1.31511 * 120.00172 * 4.95630 * 15 13 11 17 17 Si 1.86794 * 119.99817 * 184.96309 * 15 13 11 18 18 H 1.48506 * 109.47442 * 59.99755 * 17 15 13 19 19 H 1.48503 * 109.47115 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47342 * 299.99815 * 17 15 13 21 21 C 1.50698 * 109.46953 * 185.00195 * 11 10 8 22 22 C 1.38229 * 120.00067 * 151.44540 * 21 11 10 23 23 C 1.38240 * 120.00098 * 179.74250 * 22 21 11 24 24 C 1.38235 * 119.99597 * 0.52382 * 23 22 21 25 25 C 1.38225 * 120.00318 * 359.74747 * 24 23 22 26 26 C 1.38235 * 120.00141 * 359.97438 * 25 24 23 27 27 C 1.47150 * 118.03635 * 50.22328 * 7 6 4 28 28 C 1.53294 * 108.38833 * 309.71837 * 27 7 6 29 29 H 1.08993 * 109.51622 * 172.27641 * 28 27 7 30 30 C 1.53004 * 109.50881 * 292.37625 * 28 27 7 31 31 O 1.42961 * 109.50956 * 64.99661 * 4 3 2 32 32 H 1.08993 * 109.47723 * 60.00230 * 1 2 3 33 33 H 1.09007 * 109.47213 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47016 * 299.99733 * 1 2 3 35 35 H 1.09006 * 109.46769 * 59.99650 * 3 2 1 36 36 H 1.09009 * 109.46936 * 300.00492 * 3 2 1 37 37 H 1.08998 * 109.62256 * 68.07366 * 6 4 3 38 38 H 1.08997 * 109.52065 * 307.65882 * 6 4 3 39 39 H 1.08997 * 109.47194 * 60.00159 * 10 8 7 40 40 H 1.09006 * 109.47014 * 300.00034 * 10 8 7 41 41 H 0.97006 * 119.99904 * 179.97438 * 16 15 13 42 42 H 1.08002 * 119.99632 * 359.97438 * 22 21 11 43 43 H 1.08000 * 119.99756 * 180.29224 * 23 22 21 44 44 H 1.07998 * 119.99309 * 179.77031 * 24 23 22 45 45 H 1.08001 * 120.00605 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00384 * 180.02562 * 26 25 24 47 47 H 1.09010 * 109.68005 * 69.44076 * 27 7 6 48 48 H 1.08998 * 109.68289 * 189.94909 * 27 7 6 49 49 H 1.09004 * 109.46605 * 60.00127 * 30 28 27 50 50 H 1.09000 * 109.47030 * 179.97438 * 30 28 27 51 51 H 1.09000 * 109.47399 * 300.00009 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8523 0.5698 0.8418 6 6 4.1606 2.5743 0.1226 7 7 5.6144 2.4540 -0.0708 8 6 6.4786 2.9970 0.8093 9 8 6.0615 3.6000 1.7755 10 6 7.9632 2.8550 0.5930 11 6 8.7133 3.5561 1.7274 12 1 8.3814 4.5919 1.7966 13 6 8.4306 2.8499 3.0284 14 1 8.0449 3.4044 3.8710 15 6 8.6643 1.4958 3.1427 16 7 9.2245 0.8391 2.1505 17 14 8.1851 0.5942 4.7069 18 1 6.7221 0.7255 4.9255 19 1 8.5389 -0.8423 4.5783 20 1 8.9126 1.1824 5.8600 21 6 10.1937 3.5206 1.4479 22 6 11.0133 4.5213 1.9354 23 6 12.3721 4.4860 1.6835 24 6 12.9096 3.4556 0.9350 25 6 12.0893 2.4579 0.4428 26 6 10.7314 2.4901 0.6995 27 6 6.0966 1.7180 -1.2502 28 6 5.3771 0.3654 -1.3037 29 1 5.6163 -0.1374 -2.2407 30 6 5.8313 -0.5018 -0.1279 31 8 3.9660 0.5794 -1.2222 32 1 -0.3634 0.5137 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.6885 1.8463 0.8900 36 1 1.6885 1.8464 -0.8900 37 1 3.9543 2.9820 1.1122 38 1 3.7419 3.2309 -0.6401 39 1 8.2368 3.3094 -0.3592 40 1 8.2291 1.7979 0.5809 41 1 9.3893 -0.1134 2.2311 42 1 10.5925 5.3288 2.5162 43 1 13.0130 5.2654 2.0684 44 1 13.9707 3.4301 0.7351 45 1 12.5092 1.6531 -0.1423 46 1 10.0905 1.7104 0.3153 47 1 5.8762 2.2870 -2.1535 48 1 7.1720 1.5595 -1.1696 49 1 5.5901 0.0009 0.8088 50 1 5.3190 -1.4632 -0.1663 51 1 6.9080 -0.6608 -0.1882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356980074.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:52 Heat of formation + Delta-G solvation = -88.894382 kcal Electronic energy + Delta-G solvation = -32380.302604 eV Core-core repulsion = 28245.308323 eV Total energy + Delta-G solvation = -4134.994281 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.22417 -38.60195 -37.94381 -37.44728 -34.42654 -34.12890 -32.90167 -31.09530 -29.91961 -29.78876 -28.63902 -27.32086 -26.32557 -25.97791 -24.57177 -22.70075 -22.45501 -21.42878 -20.30364 -19.62359 -18.38871 -16.86480 -16.82817 -16.55797 -16.16556 -15.93781 -15.49687 -15.32759 -15.04600 -14.95643 -14.63312 -14.26101 -14.13019 -13.85802 -13.70333 -13.34277 -12.86237 -12.79043 -12.48744 -12.39626 -12.24911 -11.86395 -11.83936 -11.71586 -11.57623 -11.48398 -11.35063 -11.19574 -11.07766 -10.90129 -10.82307 -10.46474 -10.30208 -10.18114 -9.95999 -9.88461 -9.73857 -9.31885 -9.21212 -8.81213 -8.43927 -8.07419 -7.81778 -7.45693 -5.99795 -4.09239 2.48400 2.57009 3.26064 3.31188 3.34051 3.40743 3.57978 3.65331 3.82358 4.41571 4.85448 4.90642 4.95991 5.02623 5.04380 5.15148 5.17419 5.22515 5.26912 5.30859 5.42852 5.45206 5.49547 5.54670 5.64011 5.79844 5.80408 5.87408 5.92455 6.00246 6.00971 6.06492 6.18993 6.32995 6.41969 6.50452 6.54716 6.67953 6.75995 6.85106 7.02028 7.12391 7.14261 7.24485 7.27997 7.43568 7.52314 7.66576 7.91051 7.97945 8.10739 8.16183 8.32558 8.86687 9.08444 9.53863 10.94125 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014182 B = 0.003381 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.825358 B = 8280.557194 C = 8899.327574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.073 3.927 4 C 0.076 3.924 5 H 0.075 0.925 6 C 0.089 3.911 7 N -0.627 5.627 8 C 0.530 3.470 9 O -0.524 6.524 10 C -0.136 4.136 11 C 0.089 3.911 12 H 0.036 0.964 13 C -0.471 4.471 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.027 4.027 22 C -0.132 4.132 23 C -0.141 4.141 24 C -0.154 4.154 25 C -0.143 4.143 26 C -0.068 4.068 27 C 0.083 3.917 28 C 0.075 3.925 29 H 0.110 0.890 30 C -0.181 4.181 31 O -0.367 6.367 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.135 0.865 41 H 0.261 0.739 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.139 0.861 47 H 0.068 0.932 48 H 0.101 0.899 49 H 0.064 0.936 50 H 0.059 0.941 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.545 -0.826 -9.448 12.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.004 4.004 4 C 0.017 3.983 5 H 0.093 0.907 6 C -0.034 4.034 7 N -0.365 5.365 8 C 0.321 3.679 9 O -0.397 6.397 10 C -0.176 4.176 11 C 0.069 3.931 12 H 0.055 0.945 13 C -0.508 4.508 14 H 0.076 0.924 15 C -0.137 4.137 16 N -0.528 5.528 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.028 4.028 22 C -0.150 4.150 23 C -0.159 4.159 24 C -0.172 4.172 25 C -0.161 4.161 26 C -0.087 4.087 27 C -0.041 4.041 28 C 0.017 3.983 29 H 0.127 0.873 30 C -0.239 4.239 31 O -0.286 6.286 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.152 0.848 41 H 0.071 0.929 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.156 0.844 47 H 0.086 0.914 48 H 0.119 0.881 49 H 0.083 0.917 50 H 0.078 0.922 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.711 -0.881 -9.054 12.595 hybrid contribution -0.136 -0.485 1.198 1.300 sum -8.846 -1.365 -7.855 11.909 Atomic orbital electron populations 1.22733 0.81268 1.02687 0.99826 1.87952 1.19360 1.27355 1.95369 1.22459 0.91684 0.85311 1.00960 1.22349 0.92438 0.94261 0.89251 0.90663 1.21831 0.82091 0.95796 1.03717 1.48240 1.05058 1.57207 1.25972 1.21233 0.89413 0.76632 0.80640 1.90609 1.79457 1.41240 1.28440 1.21966 0.88914 1.07766 0.98952 1.17630 0.86600 0.95366 0.93464 0.94519 1.20935 1.39800 0.92816 0.97283 0.92385 1.24839 0.94804 0.97536 0.96506 1.69652 1.42972 1.08869 1.31311 0.86703 0.79085 0.78497 0.84125 1.20417 1.21351 1.20376 1.20331 0.97918 0.92330 0.92221 1.20895 0.93297 0.99562 1.01221 1.20800 0.95179 0.98841 1.01121 1.20763 0.98254 0.96559 1.01629 1.21041 0.94913 0.98305 1.01854 1.21336 0.93992 0.96815 0.96520 1.22358 1.00797 0.92469 0.88482 1.22594 0.81013 0.94754 0.99952 0.87266 1.22348 1.02622 0.99790 0.99121 1.87995 1.22331 1.81174 1.37132 0.94120 0.89705 0.94180 0.91629 0.92364 0.88284 0.91614 0.92950 0.84816 0.92887 0.87695 0.88108 0.88309 0.88085 0.84350 0.91409 0.88057 0.91709 0.92239 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.04 10.67 -39.97 -0.43 -5.46 16 3 C 0.07 0.88 5.61 37.16 0.21 1.09 16 4 C 0.08 1.09 2.66 -26.80 -0.07 1.01 16 5 H 0.08 1.23 6.25 -51.93 -0.32 0.90 16 6 C 0.09 1.34 5.90 -3.75 -0.02 1.32 16 7 N -0.63 -10.58 2.54 -172.53 -0.44 -11.02 16 8 C 0.53 11.05 7.46 -10.99 -0.08 10.97 16 9 O -0.52 -12.73 14.45 5.55 0.08 -12.65 16 10 C -0.14 -2.83 2.45 -27.88 -0.07 -2.90 16 11 C 0.09 2.09 1.97 -92.92 -0.18 1.90 16 12 H 0.04 0.89 7.91 -51.93 -0.41 0.48 16 13 C -0.47 -12.41 7.27 -34.44 -0.25 -12.66 16 14 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 15 C 0.06 1.62 5.12 -17.82 -0.09 1.53 16 16 N -0.89 -21.83 7.98 55.43 0.44 -21.38 16 17 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.03 -0.61 4.69 -104.63 -0.49 -1.10 16 22 C -0.13 -2.78 9.71 -39.58 -0.38 -3.16 16 23 C -0.14 -2.69 10.05 -39.58 -0.40 -3.08 16 24 C -0.15 -2.85 10.05 -39.59 -0.40 -3.25 16 25 C -0.14 -2.77 10.05 -39.59 -0.40 -3.17 16 26 C -0.07 -1.45 7.45 -39.58 -0.29 -1.75 16 27 C 0.08 1.14 5.92 -3.54 -0.02 1.12 16 28 C 0.08 1.00 3.93 -26.58 -0.10 0.90 16 29 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 30 C -0.18 -2.69 8.81 37.16 0.33 -2.37 16 31 O -0.37 -5.38 10.19 -39.97 -0.41 -5.79 16 32 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 37 H 0.10 1.61 7.08 -51.93 -0.37 1.24 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.97 8.01 -51.93 -0.42 0.56 16 40 H 0.13 2.90 4.22 -51.93 -0.22 2.68 16 41 H 0.26 6.33 8.31 -40.82 -0.34 5.99 16 42 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 43 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 45 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 46 H 0.14 2.98 5.18 -52.49 -0.27 2.71 16 47 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 48 H 0.10 1.40 6.05 -51.93 -0.31 1.09 16 49 H 0.06 1.14 6.11 -51.93 -0.32 0.82 16 50 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 397.38 15.07 5.99 5.99 Total: -1.00 -29.75 397.38 -9.50 -39.25 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -8.11 Total: 7.04 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -1.61 Total: -12.20 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.00 Total: -32.41 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.75 Total: -23.90 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.75 -9.50 -39.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356980074.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.649 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds