Wall clock time and date at job start Wed Apr 1 2020 04:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00386 * 2 1 4 4 C 1.52997 * 109.47864 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.50944 * 304.89981 * 4 3 2 6 6 C 1.52875 * 109.62618 * 184.90881 * 4 3 2 7 7 N 1.47155 * 108.60489 * 187.89646 * 6 4 3 8 8 C 1.34774 * 120.97952 * 230.49421 * 7 6 4 9 9 O 1.21286 * 120.00256 * 359.72534 * 8 7 6 10 10 C 1.50702 * 119.99902 * 179.71929 * 8 7 6 11 11 C 1.53007 * 109.47103 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.46622 * 304.99744 * 11 10 8 13 13 C 1.50701 * 109.47241 * 64.99932 * 11 10 8 14 14 H 1.07998 * 119.99732 * 234.68001 * 13 11 10 15 15 C 1.37878 * 119.99875 * 54.67928 * 13 11 10 16 16 N 1.31511 * 120.00172 * 4.95630 * 15 13 11 17 17 Si 1.86794 * 119.99817 * 184.96309 * 15 13 11 18 18 H 1.48506 * 109.47442 * 59.99755 * 17 15 13 19 19 H 1.48503 * 109.47115 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47342 * 299.99815 * 17 15 13 21 21 C 1.50698 * 109.46953 * 185.00195 * 11 10 8 22 22 C 1.38229 * 120.00067 * 151.44540 * 21 11 10 23 23 C 1.38240 * 120.00098 * 179.74250 * 22 21 11 24 24 C 1.38235 * 119.99597 * 0.52382 * 23 22 21 25 25 C 1.38225 * 120.00318 * 359.74747 * 24 23 22 26 26 C 1.38235 * 120.00141 * 359.97438 * 25 24 23 27 27 C 1.47150 * 118.03635 * 50.22328 * 7 6 4 28 28 C 1.53294 * 108.38833 * 309.71837 * 27 7 6 29 29 H 1.08993 * 109.51622 * 172.27641 * 28 27 7 30 30 C 1.53004 * 109.50881 * 292.37625 * 28 27 7 31 31 O 1.42961 * 109.50956 * 64.99661 * 4 3 2 32 32 H 1.08993 * 109.47723 * 60.00230 * 1 2 3 33 33 H 1.09007 * 109.47213 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47016 * 299.99733 * 1 2 3 35 35 H 1.09006 * 109.46769 * 59.99650 * 3 2 1 36 36 H 1.09009 * 109.46936 * 300.00492 * 3 2 1 37 37 H 1.08998 * 109.62256 * 68.07366 * 6 4 3 38 38 H 1.08997 * 109.52065 * 307.65882 * 6 4 3 39 39 H 1.08997 * 109.47194 * 60.00159 * 10 8 7 40 40 H 1.09006 * 109.47014 * 300.00034 * 10 8 7 41 41 H 0.97006 * 119.99904 * 179.97438 * 16 15 13 42 42 H 1.08002 * 119.99632 * 359.97438 * 22 21 11 43 43 H 1.08000 * 119.99756 * 180.29224 * 23 22 21 44 44 H 1.07998 * 119.99309 * 179.77031 * 24 23 22 45 45 H 1.08001 * 120.00605 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00384 * 180.02562 * 26 25 24 47 47 H 1.09010 * 109.68005 * 69.44076 * 27 7 6 48 48 H 1.08998 * 109.68289 * 189.94909 * 27 7 6 49 49 H 1.09004 * 109.46605 * 60.00127 * 30 28 27 50 50 H 1.09000 * 109.47030 * 179.97438 * 30 28 27 51 51 H 1.09000 * 109.47399 * 300.00009 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8523 0.5698 0.8418 6 6 4.1606 2.5743 0.1226 7 7 5.6144 2.4540 -0.0708 8 6 6.4786 2.9970 0.8093 9 8 6.0615 3.6000 1.7755 10 6 7.9632 2.8550 0.5930 11 6 8.7133 3.5561 1.7274 12 1 8.3814 4.5919 1.7966 13 6 8.4306 2.8499 3.0284 14 1 8.0449 3.4044 3.8710 15 6 8.6643 1.4958 3.1427 16 7 9.2245 0.8391 2.1505 17 14 8.1851 0.5942 4.7069 18 1 6.7221 0.7255 4.9255 19 1 8.5389 -0.8423 4.5783 20 1 8.9126 1.1824 5.8600 21 6 10.1937 3.5206 1.4479 22 6 11.0133 4.5213 1.9354 23 6 12.3721 4.4860 1.6835 24 6 12.9096 3.4556 0.9350 25 6 12.0893 2.4579 0.4428 26 6 10.7314 2.4901 0.6995 27 6 6.0966 1.7180 -1.2502 28 6 5.3771 0.3654 -1.3037 29 1 5.6163 -0.1374 -2.2407 30 6 5.8313 -0.5018 -0.1279 31 8 3.9660 0.5794 -1.2222 32 1 -0.3634 0.5137 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.6885 1.8463 0.8900 36 1 1.6885 1.8464 -0.8900 37 1 3.9543 2.9820 1.1122 38 1 3.7419 3.2309 -0.6401 39 1 8.2368 3.3094 -0.3592 40 1 8.2291 1.7979 0.5809 41 1 9.3893 -0.1134 2.2311 42 1 10.5925 5.3288 2.5162 43 1 13.0130 5.2654 2.0684 44 1 13.9707 3.4301 0.7351 45 1 12.5092 1.6531 -0.1423 46 1 10.0905 1.7104 0.3153 47 1 5.8762 2.2870 -2.1535 48 1 7.1720 1.5595 -1.1696 49 1 5.5901 0.0009 0.8088 50 1 5.3190 -1.4632 -0.1663 51 1 6.9080 -0.6608 -0.1882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356980074.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:51 Heat of formation + Delta-G solvation = -104.972534 kcal Electronic energy + Delta-G solvation = -32380.999805 eV Core-core repulsion = 28245.308323 eV Total energy + Delta-G solvation = -4135.691482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.53961 -40.10533 -39.34172 -38.52857 -36.11916 -35.58920 -34.05807 -32.94090 -31.42228 -31.05763 -30.12963 -28.48796 -27.81616 -27.14904 -25.90196 -24.19108 -23.73730 -22.97795 -21.72185 -21.09688 -19.80641 -18.42152 -18.10635 -17.80337 -17.55357 -17.28194 -16.91595 -16.69669 -16.40754 -16.18033 -16.03414 -15.58036 -15.42466 -15.30331 -15.14259 -14.88596 -14.39603 -14.28583 -13.81708 -13.73019 -13.37399 -13.31998 -13.26783 -13.12872 -13.08441 -12.87683 -12.79651 -12.70574 -12.51077 -12.36429 -12.20653 -12.08964 -11.85149 -11.69760 -11.49308 -11.08375 -11.07320 -11.02595 -10.65464 -10.59108 -10.28159 -9.43122 -9.38209 -9.10863 -7.94805 -6.09472 0.90332 1.01446 1.33838 1.35639 1.43128 1.89337 2.06666 2.43313 2.60466 2.82125 3.19520 3.38886 3.72480 3.80307 3.90783 3.96876 4.09281 4.13907 4.30053 4.33536 4.39148 4.40591 4.43311 4.46917 4.52960 4.54383 4.55887 4.59623 4.68608 4.70334 4.79122 4.85039 4.86562 4.88263 4.90403 5.01429 5.09303 5.15069 5.26501 5.35351 5.54868 5.59052 5.63788 5.68968 5.89553 5.96104 6.10434 6.11332 6.21768 6.35870 6.42567 6.53732 6.59462 6.83450 7.48333 7.52653 8.94010 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014182 B = 0.003381 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.825358 B = 8280.557194 C = 8899.327574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.076 3.924 4 C 0.081 3.919 5 H 0.047 0.953 6 C 0.089 3.911 7 N -0.623 5.623 8 C 0.524 3.476 9 O -0.571 6.571 10 C -0.124 4.124 11 C 0.090 3.910 12 H 0.012 0.988 13 C -0.493 4.493 14 H 0.024 0.976 15 C 0.043 3.957 16 N -0.878 5.878 17 Si 0.919 3.081 18 H -0.293 1.293 19 H -0.274 1.274 20 H -0.283 1.283 21 C -0.052 4.052 22 C -0.152 4.152 23 C -0.140 4.140 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.079 4.079 27 C 0.078 3.922 28 C 0.078 3.922 29 H 0.145 0.855 30 C -0.176 4.176 31 O -0.370 6.370 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.129 0.871 41 H 0.262 0.738 42 H 0.101 0.899 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.128 0.872 46 H 0.132 0.868 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.029 0.971 50 H 0.065 0.935 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.741 -1.671 -11.852 14.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.001 4.001 4 C 0.022 3.978 5 H 0.065 0.935 6 C -0.034 4.034 7 N -0.358 5.358 8 C 0.316 3.684 9 O -0.449 6.449 10 C -0.163 4.163 11 C 0.071 3.929 12 H 0.030 0.970 13 C -0.531 4.531 14 H 0.043 0.957 15 C -0.157 4.157 16 N -0.516 5.516 17 Si 0.747 3.253 18 H -0.220 1.220 19 H -0.199 1.199 20 H -0.209 1.209 21 C -0.052 4.052 22 C -0.170 4.170 23 C -0.158 4.158 24 C -0.166 4.166 25 C -0.164 4.164 26 C -0.097 4.097 27 C -0.045 4.045 28 C 0.020 3.980 29 H 0.162 0.838 30 C -0.233 4.233 31 O -0.288 6.288 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.146 0.854 41 H 0.072 0.928 42 H 0.119 0.881 43 H 0.148 0.852 44 H 0.153 0.847 45 H 0.146 0.854 46 H 0.150 0.850 47 H 0.114 0.886 48 H 0.120 0.880 49 H 0.048 0.952 50 H 0.084 0.916 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.912 -1.758 -11.507 14.075 hybrid contribution -0.378 -0.217 1.919 1.968 sum -8.290 -1.975 -9.588 12.828 Atomic orbital electron populations 1.22941 0.79211 1.03851 1.01026 1.87896 1.21667 1.27905 1.95630 1.22457 0.89850 0.85407 1.02396 1.22254 0.94181 0.92944 0.88371 0.93463 1.21939 0.81017 0.96881 1.03564 1.48203 1.05606 1.56128 1.25912 1.21271 0.89979 0.76572 0.80625 1.90583 1.80141 1.43641 1.30538 1.21773 0.88818 1.06928 0.98813 1.17507 0.88231 0.93840 0.93303 0.96973 1.20888 1.41018 0.93467 0.97734 0.95714 1.25091 0.95037 0.97601 0.97973 1.69711 1.42185 1.08757 1.30993 0.86239 0.77801 0.78540 0.82678 1.21988 1.19930 1.20868 1.20298 0.97139 0.93804 0.93989 1.21065 0.94635 0.99563 1.01787 1.21144 0.94398 0.99772 1.00512 1.21194 1.00012 0.95397 1.00044 1.21366 0.94086 0.99255 1.01649 1.21309 0.95136 0.96376 0.96909 1.22636 1.00957 0.92860 0.88002 1.22746 0.80407 0.94224 1.00620 0.83794 1.22291 1.02634 1.00099 0.98280 1.88001 1.22903 1.81059 1.36883 0.92694 0.88669 0.93157 0.90480 0.90561 0.90216 0.89002 0.90815 0.85408 0.92759 0.88127 0.85177 0.84687 0.85449 0.84989 0.88556 0.88024 0.95190 0.91622 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -10.40 10.67 -144.45 -1.54 -11.94 16 3 C 0.08 1.73 5.61 71.98 0.40 2.14 16 4 C 0.08 2.31 2.66 30.55 0.08 2.39 16 5 H 0.05 1.61 6.25 -2.39 -0.01 1.59 16 6 C 0.09 2.67 5.90 86.21 0.51 3.18 16 7 N -0.62 -21.07 2.54 -818.15 -2.08 -23.15 16 8 C 0.52 22.66 7.46 87.66 0.65 23.31 16 9 O -0.57 -29.48 14.45 -3.05 -0.04 -29.53 16 10 C -0.12 -5.25 2.45 29.85 0.07 -5.18 16 11 C 0.09 4.45 1.97 -12.28 -0.02 4.42 16 12 H 0.01 0.62 7.91 -2.39 -0.02 0.60 16 13 C -0.49 -27.36 7.27 25.60 0.19 -27.17 16 14 H 0.02 1.48 7.82 -2.91 -0.02 1.46 16 15 C 0.04 2.27 5.12 84.66 0.43 2.70 16 16 N -0.88 -43.35 7.98 21.45 0.17 -43.18 16 17 Si 0.92 44.52 29.54 68.60 2.03 46.54 16 18 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 19 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 21 C -0.05 -2.35 4.69 -19.87 -0.09 -2.45 16 22 C -0.15 -6.45 9.71 22.27 0.22 -6.23 16 23 C -0.14 -5.02 10.05 22.27 0.22 -4.80 16 24 C -0.15 -4.98 10.05 22.27 0.22 -4.76 16 25 C -0.15 -5.25 10.05 22.27 0.22 -5.03 16 26 C -0.08 -3.30 7.45 22.27 0.17 -3.13 16 27 C 0.08 2.02 5.92 86.35 0.51 2.53 16 28 C 0.08 1.93 3.93 30.69 0.12 2.05 16 29 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 30 C -0.18 -5.16 8.81 71.98 0.63 -4.53 16 31 O -0.37 -10.18 10.19 -144.45 -1.47 -11.65 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.08 2.72 7.08 -2.39 -0.02 2.70 16 38 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.07 2.74 8.01 -2.39 -0.02 2.73 16 40 H 0.13 5.62 4.22 -2.38 -0.01 5.61 16 41 H 0.26 12.60 8.31 -92.70 -0.77 11.83 16 42 H 0.10 4.20 8.06 -2.91 -0.02 4.18 16 43 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 44 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 45 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 46 H 0.13 5.61 5.18 -2.91 -0.02 5.59 16 47 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 48 H 0.10 2.66 6.05 -2.39 -0.01 2.64 16 49 H 0.03 1.08 6.11 -2.38 -0.01 1.06 16 50 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -67.01 397.38 3.76 -63.24 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.92 Total: 28.54 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 5.79 Total: -18.87 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -1.91 Total: -66.33 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -3.06 Total: -53.12 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -67.01 3.76 -63.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356980074.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.728 kcal (2) G-P(sol) polarization free energy of solvation -67.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds