Wall clock time and date at job start Wed Apr 1 2020 04:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99879 * 2 1 4 4 C 1.52995 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.51140 * 304.99787 * 4 3 2 6 6 C 1.53302 * 109.51238 * 184.90027 * 4 3 2 7 7 N 1.47261 * 108.32387 * 187.76601 * 6 4 3 8 8 C 1.34778 * 120.95613 * 230.48516 * 7 6 4 9 9 O 1.21280 * 120.00140 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.53005 * 109.47153 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46813 * 55.00442 * 11 10 8 13 13 C 1.50702 * 109.47062 * 294.99947 * 11 10 8 14 14 H 1.07996 * 120.00122 * 334.72786 * 13 11 10 15 15 C 1.37876 * 120.00006 * 154.72188 * 13 11 10 16 16 N 1.31504 * 120.00233 * 184.85775 * 15 13 11 17 17 Si 1.86803 * 119.99815 * 4.85404 * 15 13 11 18 18 H 1.48501 * 109.46973 * 84.63708 * 17 15 13 19 19 H 1.48498 * 109.47077 * 204.63471 * 17 15 13 20 20 H 1.48505 * 109.47363 * 324.63767 * 17 15 13 21 21 C 1.50701 * 109.46791 * 175.00208 * 11 10 8 22 22 C 1.38231 * 120.00144 * 55.28083 * 21 11 10 23 23 C 1.38238 * 119.99593 * 179.74135 * 22 21 11 24 24 C 1.38227 * 120.00054 * 0.55009 * 23 22 21 25 25 C 1.38237 * 120.00105 * 359.70031 * 24 23 22 26 26 C 1.38227 * 119.99905 * 0.02562 * 25 24 23 27 27 C 1.47154 * 118.06401 * 50.50773 * 7 6 4 28 28 C 1.53301 * 108.38320 * 309.46453 * 27 7 6 29 29 H 1.08991 * 109.51484 * 172.22499 * 28 27 7 30 30 C 1.53007 * 109.51284 * 292.38244 * 28 27 7 31 31 O 1.42955 * 109.51440 * 65.09788 * 4 3 2 32 32 H 1.08996 * 109.47059 * 300.00329 * 1 2 3 33 33 H 1.09000 * 109.46566 * 60.00404 * 1 2 3 34 34 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 35 35 H 1.08995 * 109.47410 * 59.99384 * 3 2 1 36 36 H 1.09007 * 109.47347 * 299.99831 * 3 2 1 37 37 H 1.08999 * 109.67625 * 307.44176 * 6 4 3 38 38 H 1.08995 * 109.68435 * 67.99825 * 6 4 3 39 39 H 1.09001 * 109.47325 * 299.99970 * 10 8 7 40 40 H 1.08998 * 109.47082 * 59.99853 * 10 8 7 41 41 H 0.97002 * 120.00274 * 180.02562 * 16 15 13 42 42 H 1.08000 * 120.00083 * 359.97438 * 22 21 11 43 43 H 1.08003 * 120.00075 * 180.27055 * 23 22 21 44 44 H 1.08008 * 119.99918 * 179.72628 * 24 23 22 45 45 H 1.08000 * 119.99746 * 180.02562 * 25 24 23 46 46 H 1.08003 * 120.00199 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.68303 * 189.74704 * 27 7 6 48 48 H 1.08990 * 109.71184 * 69.20244 * 27 7 6 49 49 H 1.08996 * 109.46972 * 179.74514 * 30 28 27 50 50 H 1.08997 * 109.46285 * 299.74205 * 30 28 27 51 51 H 1.08995 * 109.47243 * 59.74022 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8515 0.5687 0.8425 6 6 4.1595 2.5795 0.1241 7 7 5.6144 2.4542 -0.0658 8 6 6.4778 2.9968 0.8155 9 8 6.0598 3.5983 1.7821 10 6 7.9626 2.8560 0.5999 11 6 8.7116 3.5573 1.7349 12 1 8.3722 3.1625 2.6925 13 6 8.4390 5.0383 1.6769 14 1 8.1643 5.5005 0.7403 15 6 8.5402 5.8031 2.8196 16 7 8.2102 7.0758 2.7904 17 14 9.1458 5.0315 4.4093 18 1 10.6306 5.0440 4.4314 19 1 8.6271 5.8067 5.5648 20 1 8.6613 3.6304 4.4956 21 6 10.1913 3.3127 1.5867 22 6 10.8311 3.6403 0.4060 23 6 12.1894 3.4208 0.2721 24 6 12.9055 2.8633 1.3147 25 6 12.2646 2.5309 2.4935 26 6 10.9075 2.7555 2.6295 27 6 6.0979 1.7199 -1.2458 28 6 5.3785 0.3673 -1.3018 29 1 5.6179 -0.1338 -2.2396 30 6 5.8315 -0.5015 -0.1266 31 8 3.9672 0.5812 -1.2212 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.6886 1.8464 0.8899 36 1 1.6886 1.8464 -0.8900 37 1 3.7448 3.2361 -0.6408 38 1 3.9510 2.9888 1.1125 39 1 8.2293 1.7992 0.5866 40 1 8.2364 3.3117 -0.3517 41 1 8.2818 7.6140 3.5942 42 1 10.2706 4.0712 -0.4104 43 1 12.6902 3.6808 -0.6488 44 1 13.9659 2.6877 1.2084 45 1 12.8243 2.0956 3.3082 46 1 10.4067 2.4955 3.5504 47 1 7.1731 1.5606 -1.1639 48 1 5.8789 2.2898 -2.1486 49 1 5.3162 -1.4612 -0.1645 50 1 6.9075 -0.6641 -0.1887 51 1 5.5935 0.0019 0.8104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356980076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:56 Heat of formation + Delta-G solvation = -89.835376 kcal Electronic energy + Delta-G solvation = -31765.969044 eV Core-core repulsion = 27630.933959 eV Total energy + Delta-G solvation = -4135.035085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.40944 -38.88842 -38.20330 -37.60931 -34.49486 -34.17818 -33.05122 -31.69010 -30.28758 -30.08813 -29.12085 -27.48772 -26.55086 -26.08816 -24.63112 -22.82526 -22.54127 -21.92162 -20.53440 -19.68591 -18.48570 -17.09897 -16.95970 -16.90615 -16.64769 -16.07756 -15.86241 -15.51069 -15.24110 -14.99084 -14.70408 -14.48376 -14.30172 -14.16486 -13.86938 -13.48355 -13.12007 -12.83777 -12.72894 -12.66027 -12.54196 -12.35690 -12.15943 -12.00528 -11.96025 -11.73102 -11.71612 -11.41411 -11.26660 -11.14912 -10.74065 -10.60272 -10.50177 -10.37516 -10.03891 -9.90390 -9.85524 -9.61742 -9.20466 -9.02315 -8.48888 -8.25375 -8.24190 -7.83299 -6.00717 -3.97051 2.04419 2.10807 3.09059 3.31904 3.39050 3.42293 3.44051 3.49175 3.69084 4.47329 4.52995 4.64113 4.76036 4.84473 4.90260 4.99800 5.03901 5.12153 5.19414 5.20359 5.25536 5.33708 5.35318 5.42633 5.43726 5.48065 5.50686 5.53988 5.64409 5.71368 5.80304 5.84628 5.86925 5.92015 5.95641 6.00590 6.14154 6.17942 6.28165 6.48797 6.63256 6.70071 6.78789 6.92537 7.00858 7.10243 7.10437 7.21288 7.55526 7.67476 7.77328 7.77988 8.50075 8.86194 8.98425 9.62333 11.12435 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.003168 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.239784 B = 8836.414955 C =10044.125983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.071 3.929 4 C 0.077 3.923 5 H 0.075 0.925 6 C 0.089 3.911 7 N -0.628 5.628 8 C 0.520 3.480 9 O -0.495 6.495 10 C -0.112 4.112 11 C 0.049 3.951 12 H 0.054 0.946 13 C -0.482 4.482 14 H 0.071 0.929 15 C 0.083 3.917 16 N -0.897 5.897 17 Si 0.868 3.132 18 H -0.272 1.272 19 H -0.293 1.293 20 H -0.263 1.263 21 C -0.039 4.039 22 C -0.108 4.108 23 C -0.124 4.124 24 C -0.150 4.150 25 C -0.122 4.122 26 C -0.142 4.142 27 C 0.081 3.919 28 C 0.074 3.926 29 H 0.112 0.888 30 C -0.184 4.184 31 O -0.365 6.365 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.262 0.738 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.073 0.927 49 H 0.064 0.936 50 H 0.068 0.932 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.315 -15.204 -8.634 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.006 4.006 4 C 0.019 3.981 5 H 0.093 0.907 6 C -0.034 4.034 7 N -0.366 5.366 8 C 0.308 3.692 9 O -0.366 6.366 10 C -0.152 4.152 11 C 0.029 3.971 12 H 0.072 0.928 13 C -0.520 4.520 14 H 0.089 0.911 15 C -0.119 4.119 16 N -0.535 5.535 17 Si 0.696 3.304 18 H -0.198 1.198 19 H -0.219 1.219 20 H -0.188 1.188 21 C -0.039 4.039 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.168 4.168 25 C -0.140 4.140 26 C -0.160 4.160 27 C -0.043 4.043 28 C 0.016 3.984 29 H 0.129 0.871 30 C -0.241 4.241 31 O -0.284 6.284 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.136 0.864 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.115 0.885 48 H 0.091 0.909 49 H 0.083 0.917 50 H 0.087 0.913 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.557 -14.871 -8.088 18.153 hybrid contribution 0.392 0.193 1.050 1.137 sum -6.165 -14.678 -7.038 17.406 Atomic orbital electron populations 1.22742 0.81114 1.02707 0.99965 1.87931 1.19499 1.27342 1.95414 1.22467 0.91507 0.85351 1.01259 1.22451 0.92657 0.94085 0.88948 0.90738 1.21988 0.81438 0.95710 1.04291 1.48232 1.05388 1.57181 1.25840 1.20874 0.88881 0.77629 0.81775 1.90749 1.78838 1.38221 1.28753 1.21633 0.90750 1.00394 1.02430 1.18274 0.86033 0.97759 0.95001 0.92796 1.20598 1.45596 0.88992 0.96771 0.91061 1.24862 0.94108 0.94591 0.98342 1.69878 1.47916 1.06676 1.29020 0.87058 0.79495 0.79897 0.83936 1.19763 1.21931 1.18797 1.20767 0.98997 0.91738 0.92425 1.20925 0.93890 0.99622 0.98133 1.21046 0.94634 1.00071 0.98431 1.20860 0.98953 1.02658 0.94379 1.20964 0.94712 1.00978 0.97312 1.21081 0.94353 1.01433 0.99116 1.22378 1.00241 0.92646 0.89052 1.22596 0.81387 0.94557 0.99855 0.87076 1.22381 1.02069 1.00320 0.99354 1.88026 1.21956 1.81180 1.37232 0.94088 0.94045 0.89680 0.91447 0.92193 0.91156 0.87966 0.91217 0.89672 0.92800 0.86381 0.87109 0.87331 0.87301 0.87272 0.88500 0.90921 0.91732 0.91273 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.51 10.67 -39.88 -0.43 -4.94 16 3 C 0.07 0.77 5.60 37.15 0.21 0.98 16 4 C 0.08 0.96 2.67 -26.58 -0.07 0.89 16 5 H 0.07 0.99 6.25 -51.93 -0.32 0.67 16 6 C 0.09 1.24 5.93 -3.47 -0.02 1.22 16 7 N -0.63 -9.53 2.54 -172.19 -0.44 -9.97 16 8 C 0.52 10.08 7.46 -10.98 -0.08 10.00 16 9 O -0.49 -12.00 14.46 5.56 0.08 -11.92 16 10 C -0.11 -2.04 3.21 -27.88 -0.09 -2.13 16 11 C 0.05 1.10 1.24 -92.92 -0.12 0.99 16 12 H 0.05 1.33 5.26 -51.93 -0.27 1.05 16 13 C -0.48 -13.23 7.19 -34.44 -0.25 -13.48 16 14 H 0.07 2.12 8.05 -52.49 -0.42 1.70 16 15 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 16 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 17 Si 0.87 22.50 24.76 -169.99 -4.21 18.29 16 18 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 20 H -0.26 -6.52 5.95 56.52 0.34 -6.18 16 21 C -0.04 -0.80 4.30 -104.62 -0.45 -1.25 16 22 C -0.11 -2.03 8.94 -39.58 -0.35 -2.38 16 23 C -0.12 -2.05 10.05 -39.59 -0.40 -2.45 16 24 C -0.15 -2.42 10.05 -39.59 -0.40 -2.82 16 25 C -0.12 -2.11 10.05 -39.59 -0.40 -2.50 16 26 C -0.14 -2.82 8.15 -39.59 -0.32 -3.14 16 27 C 0.08 0.93 5.92 -3.53 -0.02 0.91 16 28 C 0.07 0.79 3.93 -26.57 -0.10 0.69 16 29 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 30 C -0.18 -1.95 8.81 37.16 0.33 -1.62 16 31 O -0.37 -4.63 10.19 -39.88 -0.41 -5.03 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.57 7.09 -51.93 -0.37 1.20 16 39 H 0.07 1.07 7.66 -51.93 -0.40 0.67 16 40 H 0.08 1.45 7.20 -51.93 -0.37 1.07 16 41 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 42 H 0.12 2.13 7.37 -52.49 -0.39 1.74 16 43 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 44 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 45 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 46 H 0.11 2.17 6.76 -52.48 -0.36 1.81 16 47 H 0.10 1.01 6.05 -51.93 -0.31 0.69 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.06 0.80 6.11 -51.93 -0.32 0.49 16 LS Contribution 398.42 15.07 6.00 6.00 Total: -1.00 -34.91 398.42 -8.37 -43.28 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -8.23 Total: 3.95 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -1.52 Total: -12.41 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.34 Total: -37.23 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.75 Total: -21.89 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.21 Total: 18.29 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.91 -8.37 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356980076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.553 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds