Wall clock time and date at job start Wed Apr 1 2020 04:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99879 * 2 1 4 4 C 1.52995 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.51140 * 304.99787 * 4 3 2 6 6 C 1.53302 * 109.51238 * 184.90027 * 4 3 2 7 7 N 1.47261 * 108.32387 * 187.76601 * 6 4 3 8 8 C 1.34778 * 120.95613 * 230.48516 * 7 6 4 9 9 O 1.21280 * 120.00140 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.53005 * 109.47153 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46813 * 55.00442 * 11 10 8 13 13 C 1.50702 * 109.47062 * 294.99947 * 11 10 8 14 14 H 1.07996 * 120.00122 * 334.72786 * 13 11 10 15 15 C 1.37876 * 120.00006 * 154.72188 * 13 11 10 16 16 N 1.31504 * 120.00233 * 184.85775 * 15 13 11 17 17 Si 1.86803 * 119.99815 * 4.85404 * 15 13 11 18 18 H 1.48501 * 109.46973 * 84.63708 * 17 15 13 19 19 H 1.48498 * 109.47077 * 204.63471 * 17 15 13 20 20 H 1.48505 * 109.47363 * 324.63767 * 17 15 13 21 21 C 1.50701 * 109.46791 * 175.00208 * 11 10 8 22 22 C 1.38231 * 120.00144 * 55.28083 * 21 11 10 23 23 C 1.38238 * 119.99593 * 179.74135 * 22 21 11 24 24 C 1.38227 * 120.00054 * 0.55009 * 23 22 21 25 25 C 1.38237 * 120.00105 * 359.70031 * 24 23 22 26 26 C 1.38227 * 119.99905 * 0.02562 * 25 24 23 27 27 C 1.47154 * 118.06401 * 50.50773 * 7 6 4 28 28 C 1.53301 * 108.38320 * 309.46453 * 27 7 6 29 29 H 1.08991 * 109.51484 * 172.22499 * 28 27 7 30 30 C 1.53007 * 109.51284 * 292.38244 * 28 27 7 31 31 O 1.42955 * 109.51440 * 65.09788 * 4 3 2 32 32 H 1.08996 * 109.47059 * 300.00329 * 1 2 3 33 33 H 1.09000 * 109.46566 * 60.00404 * 1 2 3 34 34 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 35 35 H 1.08995 * 109.47410 * 59.99384 * 3 2 1 36 36 H 1.09007 * 109.47347 * 299.99831 * 3 2 1 37 37 H 1.08999 * 109.67625 * 307.44176 * 6 4 3 38 38 H 1.08995 * 109.68435 * 67.99825 * 6 4 3 39 39 H 1.09001 * 109.47325 * 299.99970 * 10 8 7 40 40 H 1.08998 * 109.47082 * 59.99853 * 10 8 7 41 41 H 0.97002 * 120.00274 * 180.02562 * 16 15 13 42 42 H 1.08000 * 120.00083 * 359.97438 * 22 21 11 43 43 H 1.08003 * 120.00075 * 180.27055 * 23 22 21 44 44 H 1.08008 * 119.99918 * 179.72628 * 24 23 22 45 45 H 1.08000 * 119.99746 * 180.02562 * 25 24 23 46 46 H 1.08003 * 120.00199 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.68303 * 189.74704 * 27 7 6 48 48 H 1.08990 * 109.71184 * 69.20244 * 27 7 6 49 49 H 1.08996 * 109.46972 * 179.74514 * 30 28 27 50 50 H 1.08997 * 109.46285 * 299.74205 * 30 28 27 51 51 H 1.08995 * 109.47243 * 59.74022 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8515 0.5687 0.8425 6 6 4.1595 2.5795 0.1241 7 7 5.6144 2.4542 -0.0658 8 6 6.4778 2.9968 0.8155 9 8 6.0598 3.5983 1.7821 10 6 7.9626 2.8560 0.5999 11 6 8.7116 3.5573 1.7349 12 1 8.3722 3.1625 2.6925 13 6 8.4390 5.0383 1.6769 14 1 8.1643 5.5005 0.7403 15 6 8.5402 5.8031 2.8196 16 7 8.2102 7.0758 2.7904 17 14 9.1458 5.0315 4.4093 18 1 10.6306 5.0440 4.4314 19 1 8.6271 5.8067 5.5648 20 1 8.6613 3.6304 4.4956 21 6 10.1913 3.3127 1.5867 22 6 10.8311 3.6403 0.4060 23 6 12.1894 3.4208 0.2721 24 6 12.9055 2.8633 1.3147 25 6 12.2646 2.5309 2.4935 26 6 10.9075 2.7555 2.6295 27 6 6.0979 1.7199 -1.2458 28 6 5.3785 0.3673 -1.3018 29 1 5.6179 -0.1338 -2.2396 30 6 5.8315 -0.5015 -0.1266 31 8 3.9672 0.5812 -1.2212 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.6886 1.8464 0.8899 36 1 1.6886 1.8464 -0.8900 37 1 3.7448 3.2361 -0.6408 38 1 3.9510 2.9888 1.1125 39 1 8.2293 1.7992 0.5866 40 1 8.2364 3.3117 -0.3517 41 1 8.2818 7.6140 3.5942 42 1 10.2706 4.0712 -0.4104 43 1 12.6902 3.6808 -0.6488 44 1 13.9659 2.6877 1.2084 45 1 12.8243 2.0956 3.3082 46 1 10.4067 2.4955 3.5504 47 1 7.1731 1.5606 -1.1639 48 1 5.8789 2.2898 -2.1486 49 1 5.3162 -1.4612 -0.1645 50 1 6.9075 -0.6641 -0.1887 51 1 5.5935 0.0019 0.8104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356980076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:55 Heat of formation + Delta-G solvation = -113.024647 kcal Electronic energy + Delta-G solvation = -31766.974607 eV Core-core repulsion = 27630.933959 eV Total energy + Delta-G solvation = -4136.040648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.59719 -40.26550 -39.49318 -38.53722 -35.99745 -35.64834 -34.11310 -33.66563 -31.65640 -31.13733 -30.43707 -28.59291 -27.88398 -27.17216 -25.90300 -24.15565 -23.74641 -23.31085 -21.77837 -21.05548 -19.79760 -19.05899 -18.35300 -17.92584 -17.56211 -17.35443 -16.98506 -16.64123 -16.44011 -16.30007 -15.98780 -15.85301 -15.44231 -15.41551 -15.17404 -14.83465 -14.70677 -14.43895 -14.15486 -13.93836 -13.73971 -13.62842 -13.33983 -13.30163 -13.07197 -12.96990 -12.83326 -12.65169 -12.52012 -12.34108 -12.12232 -12.09757 -11.90521 -11.80425 -11.52229 -11.47957 -11.11234 -11.05372 -10.76270 -10.65814 -10.50573 -9.63828 -9.48497 -9.31805 -8.24742 -6.20847 0.65254 0.71166 1.28202 1.31221 1.36574 1.82328 1.90275 2.36085 2.60571 2.81211 3.05449 3.18465 3.66330 3.72502 3.89581 3.95600 4.01498 4.06666 4.14391 4.26227 4.27086 4.28094 4.34725 4.37616 4.40249 4.46069 4.47552 4.52563 4.56138 4.58102 4.60378 4.70640 4.79610 4.83826 4.85670 4.86685 4.89588 4.97180 5.08004 5.20156 5.26054 5.35598 5.37661 5.50873 5.67732 5.75059 5.80051 5.99483 6.11802 6.20698 6.29304 6.32817 6.44592 6.77748 7.38340 7.41392 8.92553 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.003168 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.239784 B = 8836.414955 C =10044.125983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.072 3.928 4 C 0.088 3.912 5 H 0.062 0.938 6 C 0.087 3.913 7 N -0.621 5.621 8 C 0.514 3.486 9 O -0.559 6.559 10 C -0.106 4.106 11 C 0.052 3.948 12 H 0.030 0.970 13 C -0.461 4.461 14 H 0.034 0.966 15 C 0.021 3.979 16 N -0.952 5.952 17 Si 0.919 3.081 18 H -0.260 1.260 19 H -0.301 1.301 20 H -0.252 1.252 21 C -0.063 4.063 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.140 4.140 25 C -0.124 4.124 26 C -0.162 4.162 27 C 0.074 3.926 28 C 0.074 3.926 29 H 0.144 0.856 30 C -0.181 4.181 31 O -0.373 6.373 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.259 0.741 42 H 0.118 0.882 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.137 0.863 46 H 0.101 0.899 47 H 0.113 0.887 48 H 0.087 0.913 49 H 0.068 0.932 50 H 0.085 0.915 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 -18.028 -10.476 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.005 4.005 4 C 0.029 3.971 5 H 0.080 0.920 6 C -0.036 4.036 7 N -0.357 5.357 8 C 0.304 3.696 9 O -0.435 6.435 10 C -0.145 4.145 11 C 0.033 3.967 12 H 0.048 0.952 13 C -0.499 4.499 14 H 0.053 0.947 15 C -0.176 4.176 16 N -0.594 5.594 17 Si 0.746 3.254 18 H -0.185 1.185 19 H -0.228 1.228 20 H -0.177 1.177 21 C -0.063 4.063 22 C -0.138 4.138 23 C -0.137 4.137 24 C -0.158 4.158 25 C -0.142 4.142 26 C -0.180 4.180 27 C -0.048 4.048 28 C 0.017 3.983 29 H 0.162 0.838 30 C -0.238 4.238 31 O -0.292 6.292 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.068 0.932 42 H 0.136 0.864 43 H 0.162 0.838 44 H 0.165 0.835 45 H 0.155 0.845 46 H 0.119 0.881 47 H 0.131 0.869 48 H 0.105 0.895 49 H 0.087 0.913 50 H 0.104 0.896 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.565 -17.764 -9.990 20.885 hybrid contribution -0.217 0.955 1.453 1.752 sum -4.782 -16.809 -8.537 19.449 Atomic orbital electron populations 1.22943 0.79288 1.03912 1.00919 1.87879 1.21549 1.27662 1.95618 1.22462 0.90344 0.85459 1.02197 1.22284 0.93749 0.92416 0.88684 0.92041 1.22052 0.80946 0.97172 1.03434 1.48209 1.05578 1.56012 1.25893 1.21130 0.89831 0.77086 0.81537 1.90723 1.79830 1.41436 1.31540 1.21563 0.89572 1.02158 1.01244 1.18092 0.88526 0.94589 0.95542 0.95200 1.20822 1.42807 0.91520 0.94711 0.94742 1.25597 0.95340 0.94975 1.01660 1.70027 1.51432 1.08299 1.29625 0.86225 0.79534 0.79407 0.80207 1.18457 1.22822 1.17687 1.20483 0.97283 0.94475 0.94097 1.21039 0.95317 0.99952 0.97498 1.21434 0.93577 0.98733 0.99992 1.21348 1.00787 1.00433 0.93249 1.21322 0.93683 1.00345 0.98833 1.21179 0.95819 1.02497 0.98551 1.22724 1.01389 0.93002 0.87723 1.22816 0.80252 0.93950 1.01311 0.83843 1.22364 1.03232 1.00171 0.98064 1.88025 1.23220 1.80983 1.36999 0.93182 0.93026 0.88428 0.90563 0.91212 0.90094 0.90183 0.87627 0.88269 0.93241 0.86412 0.83792 0.83467 0.84491 0.88129 0.86886 0.89510 0.91306 0.89603 0.94396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -9.24 10.67 -144.54 -1.54 -10.78 16 3 C 0.07 1.52 5.60 71.98 0.40 1.93 16 4 C 0.09 2.15 2.67 30.69 0.08 2.23 16 5 H 0.06 1.68 6.25 -2.39 -0.01 1.66 16 6 C 0.09 2.49 5.93 86.34 0.51 3.00 16 7 N -0.62 -18.83 2.54 -817.07 -2.07 -20.90 16 8 C 0.51 20.50 7.46 87.66 0.65 21.15 16 9 O -0.56 -28.74 14.46 -3.03 -0.04 -28.79 16 10 C -0.11 -3.83 3.21 29.85 0.10 -3.73 16 11 C 0.05 2.38 1.24 -12.28 -0.02 2.37 16 12 H 0.03 1.51 5.26 -2.39 -0.01 1.50 16 13 C -0.46 -26.35 7.19 25.60 0.18 -26.16 16 14 H 0.03 2.16 8.05 -2.91 -0.02 2.14 16 15 C 0.02 1.26 5.47 84.66 0.46 1.72 16 16 N -0.95 -62.71 13.96 21.45 0.30 -62.41 16 17 Si 0.92 48.15 24.76 68.60 1.70 49.85 16 18 H -0.26 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.30 -15.94 7.11 99.48 0.71 -15.24 16 20 H -0.25 -12.59 5.95 99.48 0.59 -12.00 16 21 C -0.06 -2.55 4.30 -19.87 -0.09 -2.63 16 22 C -0.12 -4.28 8.94 22.27 0.20 -4.08 16 23 C -0.12 -3.48 10.05 22.27 0.22 -3.26 16 24 C -0.14 -3.84 10.05 22.27 0.22 -3.62 16 25 C -0.12 -3.84 10.05 22.27 0.22 -3.61 16 26 C -0.16 -6.18 8.15 22.27 0.18 -5.99 16 27 C 0.07 1.55 5.92 86.36 0.51 2.06 16 28 C 0.07 1.39 3.93 30.70 0.12 1.51 16 29 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 30 C -0.18 -3.51 8.81 71.98 0.63 -2.87 16 31 O -0.37 -8.84 10.19 -144.54 -1.47 -10.31 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.08 2.65 7.09 -2.39 -0.02 2.63 16 39 H 0.11 3.03 7.66 -2.39 -0.02 3.01 16 40 H 0.10 3.29 7.20 -2.39 -0.02 3.27 16 41 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 42 H 0.12 4.10 7.37 -2.91 -0.02 4.07 16 43 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 44 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 45 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 46 H 0.10 3.91 6.76 -2.91 -0.02 3.89 16 47 H 0.11 2.00 6.05 -2.39 -0.01 1.99 16 48 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.04 0.93 6.11 -2.39 -0.01 0.92 16 Total: -1.00 -81.38 398.42 3.52 -77.85 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.80 Total: 23.86 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 5.86 Total: -18.37 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -1.77 Total: -83.31 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -3.06 Total: -49.88 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 1.70 Total: 49.85 kcal Total: -81.38 3.52 -77.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356980076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.171 kcal (2) G-P(sol) polarization free energy of solvation -81.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds