Wall clock time and date at job start Wed Apr 1 2020 04:46:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42907 * 1
3 3 C 1.42898 * 113.99879 * 2 1
4 4 C 1.52995 * 109.47134 * 179.97438 * 3 2 1
5 5 H 1.09002 * 109.51140 * 304.99787 * 4 3 2
6 6 C 1.53302 * 109.51238 * 184.90027 * 4 3 2
7 7 N 1.47261 * 108.32387 * 187.76601 * 6 4 3
8 8 C 1.34778 * 120.95613 * 230.48516 * 7 6 4
9 9 O 1.21280 * 120.00140 * 0.02562 * 8 7 6
10 10 C 1.50700 * 120.00035 * 180.02562 * 8 7 6
11 11 C 1.53005 * 109.47153 * 179.97438 * 10 8 7
12 12 H 1.08999 * 109.46813 * 55.00442 * 11 10 8
13 13 C 1.50702 * 109.47062 * 294.99947 * 11 10 8
14 14 H 1.07996 * 120.00122 * 334.72786 * 13 11 10
15 15 C 1.37876 * 120.00006 * 154.72188 * 13 11 10
16 16 N 1.31504 * 120.00233 * 184.85775 * 15 13 11
17 17 Si 1.86803 * 119.99815 * 4.85404 * 15 13 11
18 18 H 1.48501 * 109.46973 * 84.63708 * 17 15 13
19 19 H 1.48498 * 109.47077 * 204.63471 * 17 15 13
20 20 H 1.48505 * 109.47363 * 324.63767 * 17 15 13
21 21 C 1.50701 * 109.46791 * 175.00208 * 11 10 8
22 22 C 1.38231 * 120.00144 * 55.28083 * 21 11 10
23 23 C 1.38238 * 119.99593 * 179.74135 * 22 21 11
24 24 C 1.38227 * 120.00054 * 0.55009 * 23 22 21
25 25 C 1.38237 * 120.00105 * 359.70031 * 24 23 22
26 26 C 1.38227 * 119.99905 * 0.02562 * 25 24 23
27 27 C 1.47154 * 118.06401 * 50.50773 * 7 6 4
28 28 C 1.53301 * 108.38320 * 309.46453 * 27 7 6
29 29 H 1.08991 * 109.51484 * 172.22499 * 28 27 7
30 30 C 1.53007 * 109.51284 * 292.38244 * 28 27 7
31 31 O 1.42955 * 109.51440 * 65.09788 * 4 3 2
32 32 H 1.08996 * 109.47059 * 300.00329 * 1 2 3
33 33 H 1.09000 * 109.46566 * 60.00404 * 1 2 3
34 34 H 1.09001 * 109.47072 * 179.97438 * 1 2 3
35 35 H 1.08995 * 109.47410 * 59.99384 * 3 2 1
36 36 H 1.09007 * 109.47347 * 299.99831 * 3 2 1
37 37 H 1.08999 * 109.67625 * 307.44176 * 6 4 3
38 38 H 1.08995 * 109.68435 * 67.99825 * 6 4 3
39 39 H 1.09001 * 109.47325 * 299.99970 * 10 8 7
40 40 H 1.08998 * 109.47082 * 59.99853 * 10 8 7
41 41 H 0.97002 * 120.00274 * 180.02562 * 16 15 13
42 42 H 1.08000 * 120.00083 * 359.97438 * 22 21 11
43 43 H 1.08003 * 120.00075 * 180.27055 * 23 22 21
44 44 H 1.08008 * 119.99918 * 179.72628 * 24 23 22
45 45 H 1.08000 * 119.99746 * 180.02562 * 25 24 23
46 46 H 1.08003 * 120.00199 * 179.97438 * 26 25 24
47 47 H 1.08996 * 109.68303 * 189.74704 * 27 7 6
48 48 H 1.08990 * 109.71184 * 69.20244 * 27 7 6
49 49 H 1.08996 * 109.46972 * 179.74514 * 30 28 27
50 50 H 1.08997 * 109.46285 * 299.74205 * 30 28 27
51 51 H 1.08995 * 109.47243 * 59.74022 * 30 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 1 3.8515 0.5687 0.8425
6 6 4.1595 2.5795 0.1241
7 7 5.6144 2.4542 -0.0658
8 6 6.4778 2.9968 0.8155
9 8 6.0598 3.5983 1.7821
10 6 7.9626 2.8560 0.5999
11 6 8.7116 3.5573 1.7349
12 1 8.3722 3.1625 2.6925
13 6 8.4390 5.0383 1.6769
14 1 8.1643 5.5005 0.7403
15 6 8.5402 5.8031 2.8196
16 7 8.2102 7.0758 2.7904
17 14 9.1458 5.0315 4.4093
18 1 10.6306 5.0440 4.4314
19 1 8.6271 5.8067 5.5648
20 1 8.6613 3.6304 4.4956
21 6 10.1913 3.3127 1.5867
22 6 10.8311 3.6403 0.4060
23 6 12.1894 3.4208 0.2721
24 6 12.9055 2.8633 1.3147
25 6 12.2646 2.5309 2.4935
26 6 10.9075 2.7555 2.6295
27 6 6.0979 1.7199 -1.2458
28 6 5.3785 0.3673 -1.3018
29 1 5.6179 -0.1338 -2.2396
30 6 5.8315 -0.5015 -0.1266
31 8 3.9672 0.5812 -1.2212
32 1 -0.3633 0.5139 0.8899
33 1 -0.3632 0.5138 -0.8900
34 1 -0.3633 -1.0277 -0.0005
35 1 1.6886 1.8464 0.8899
36 1 1.6886 1.8464 -0.8900
37 1 3.7448 3.2361 -0.6408
38 1 3.9510 2.9888 1.1125
39 1 8.2293 1.7992 0.5866
40 1 8.2364 3.3117 -0.3517
41 1 8.2818 7.6140 3.5942
42 1 10.2706 4.0712 -0.4104
43 1 12.6902 3.6808 -0.6488
44 1 13.9659 2.6877 1.2084
45 1 12.8243 2.0956 3.3082
46 1 10.4067 2.4955 3.5504
47 1 7.1731 1.5606 -1.1639
48 1 5.8789 2.2898 -2.1486
49 1 5.3162 -1.4612 -0.1645
50 1 6.9075 -0.6641 -0.1887
51 1 5.5935 0.0019 0.8104
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000356980076.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:46:55
Heat of formation + Delta-G solvation = -113.024647 kcal
Electronic energy + Delta-G solvation = -31766.974607 eV
Core-core repulsion = 27630.933959 eV
Total energy + Delta-G solvation = -4136.040648 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.193 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.59719 -40.26550 -39.49318 -38.53722 -35.99745 -35.64834 -34.11310 -33.66563
-31.65640 -31.13733 -30.43707 -28.59291 -27.88398 -27.17216 -25.90300 -24.15565
-23.74641 -23.31085 -21.77837 -21.05548 -19.79760 -19.05899 -18.35300 -17.92584
-17.56211 -17.35443 -16.98506 -16.64123 -16.44011 -16.30007 -15.98780 -15.85301
-15.44231 -15.41551 -15.17404 -14.83465 -14.70677 -14.43895 -14.15486 -13.93836
-13.73971 -13.62842 -13.33983 -13.30163 -13.07197 -12.96990 -12.83326 -12.65169
-12.52012 -12.34108 -12.12232 -12.09757 -11.90521 -11.80425 -11.52229 -11.47957
-11.11234 -11.05372 -10.76270 -10.65814 -10.50573 -9.63828 -9.48497 -9.31805
-8.24742 -6.20847 0.65254 0.71166 1.28202 1.31221 1.36574 1.82328
1.90275 2.36085 2.60571 2.81211 3.05449 3.18465 3.66330 3.72502
3.89581 3.95600 4.01498 4.06666 4.14391 4.26227 4.27086 4.28094
4.34725 4.37616 4.40249 4.46069 4.47552 4.52563 4.56138 4.58102
4.60378 4.70640 4.79610 4.83826 4.85670 4.86685 4.89588 4.97180
5.08004 5.20156 5.26054 5.35598 5.37661 5.50873 5.67732 5.75059
5.80051 5.99483 6.11802 6.20698 6.29304 6.32817 6.44592 6.77748
7.38340 7.41392 8.92553
Molecular weight = 347.19amu
Principal moments of inertia in cm(-1)
A = 0.013291 B = 0.003168 C = 0.002787
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2106.239784 B = 8836.414955 C =10044.125983
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.408 6.408
3 C 0.072 3.928
4 C 0.088 3.912
5 H 0.062 0.938
6 C 0.087 3.913
7 N -0.621 5.621
8 C 0.514 3.486
9 O -0.559 6.559
10 C -0.106 4.106
11 C 0.052 3.948
12 H 0.030 0.970
13 C -0.461 4.461
14 H 0.034 0.966
15 C 0.021 3.979
16 N -0.952 5.952
17 Si 0.919 3.081
18 H -0.260 1.260
19 H -0.301 1.301
20 H -0.252 1.252
21 C -0.063 4.063
22 C -0.120 4.120
23 C -0.120 4.120
24 C -0.140 4.140
25 C -0.124 4.124
26 C -0.162 4.162
27 C 0.074 3.926
28 C 0.074 3.926
29 H 0.144 0.856
30 C -0.181 4.181
31 O -0.373 6.373
32 H 0.050 0.950
33 H 0.051 0.949
34 H 0.097 0.903
35 H 0.076 0.924
36 H 0.070 0.930
37 H 0.081 0.919
38 H 0.080 0.920
39 H 0.106 0.894
40 H 0.099 0.901
41 H 0.259 0.741
42 H 0.118 0.882
43 H 0.144 0.856
44 H 0.148 0.852
45 H 0.137 0.863
46 H 0.101 0.899
47 H 0.113 0.887
48 H 0.087 0.913
49 H 0.068 0.932
50 H 0.085 0.915
51 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.322 -18.028 -10.476 21.294
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.327 6.327
3 C -0.005 4.005
4 C 0.029 3.971
5 H 0.080 0.920
6 C -0.036 4.036
7 N -0.357 5.357
8 C 0.304 3.696
9 O -0.435 6.435
10 C -0.145 4.145
11 C 0.033 3.967
12 H 0.048 0.952
13 C -0.499 4.499
14 H 0.053 0.947
15 C -0.176 4.176
16 N -0.594 5.594
17 Si 0.746 3.254
18 H -0.185 1.185
19 H -0.228 1.228
20 H -0.177 1.177
21 C -0.063 4.063
22 C -0.138 4.138
23 C -0.137 4.137
24 C -0.158 4.158
25 C -0.142 4.142
26 C -0.180 4.180
27 C -0.048 4.048
28 C 0.017 3.983
29 H 0.162 0.838
30 C -0.238 4.238
31 O -0.292 6.292
32 H 0.068 0.932
33 H 0.070 0.930
34 H 0.116 0.884
35 H 0.094 0.906
36 H 0.088 0.912
37 H 0.099 0.901
38 H 0.098 0.902
39 H 0.124 0.876
40 H 0.117 0.883
41 H 0.068 0.932
42 H 0.136 0.864
43 H 0.162 0.838
44 H 0.165 0.835
45 H 0.155 0.845
46 H 0.119 0.881
47 H 0.131 0.869
48 H 0.105 0.895
49 H 0.087 0.913
50 H 0.104 0.896
51 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -4.565 -17.764 -9.990 20.885
hybrid contribution -0.217 0.955 1.453 1.752
sum -4.782 -16.809 -8.537 19.449
Atomic orbital electron populations
1.22943 0.79288 1.03912 1.00919 1.87879 1.21549 1.27662 1.95618
1.22462 0.90344 0.85459 1.02197 1.22284 0.93749 0.92416 0.88684
0.92041 1.22052 0.80946 0.97172 1.03434 1.48209 1.05578 1.56012
1.25893 1.21130 0.89831 0.77086 0.81537 1.90723 1.79830 1.41436
1.31540 1.21563 0.89572 1.02158 1.01244 1.18092 0.88526 0.94589
0.95542 0.95200 1.20822 1.42807 0.91520 0.94711 0.94742 1.25597
0.95340 0.94975 1.01660 1.70027 1.51432 1.08299 1.29625 0.86225
0.79534 0.79407 0.80207 1.18457 1.22822 1.17687 1.20483 0.97283
0.94475 0.94097 1.21039 0.95317 0.99952 0.97498 1.21434 0.93577
0.98733 0.99992 1.21348 1.00787 1.00433 0.93249 1.21322 0.93683
1.00345 0.98833 1.21179 0.95819 1.02497 0.98551 1.22724 1.01389
0.93002 0.87723 1.22816 0.80252 0.93950 1.01311 0.83843 1.22364
1.03232 1.00171 0.98064 1.88025 1.23220 1.80983 1.36999 0.93182
0.93026 0.88428 0.90563 0.91212 0.90094 0.90183 0.87627 0.88269
0.93241 0.86412 0.83792 0.83467 0.84491 0.88129 0.86886 0.89510
0.91306 0.89603 0.94396
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.37 11.01 113.37 1.25 1.62 16
2 O -0.41 -9.24 10.67 -144.54 -1.54 -10.78 16
3 C 0.07 1.52 5.60 71.98 0.40 1.93 16
4 C 0.09 2.15 2.67 30.69 0.08 2.23 16
5 H 0.06 1.68 6.25 -2.39 -0.01 1.66 16
6 C 0.09 2.49 5.93 86.34 0.51 3.00 16
7 N -0.62 -18.83 2.54 -817.07 -2.07 -20.90 16
8 C 0.51 20.50 7.46 87.66 0.65 21.15 16
9 O -0.56 -28.74 14.46 -3.03 -0.04 -28.79 16
10 C -0.11 -3.83 3.21 29.85 0.10 -3.73 16
11 C 0.05 2.38 1.24 -12.28 -0.02 2.37 16
12 H 0.03 1.51 5.26 -2.39 -0.01 1.50 16
13 C -0.46 -26.35 7.19 25.60 0.18 -26.16 16
14 H 0.03 2.16 8.05 -2.91 -0.02 2.14 16
15 C 0.02 1.26 5.47 84.66 0.46 1.72 16
16 N -0.95 -62.71 13.96 21.45 0.30 -62.41 16
17 Si 0.92 48.15 24.76 68.60 1.70 49.85 16
18 H -0.26 -12.89 7.11 99.48 0.71 -12.18 16
19 H -0.30 -15.94 7.11 99.48 0.71 -15.24 16
20 H -0.25 -12.59 5.95 99.48 0.59 -12.00 16
21 C -0.06 -2.55 4.30 -19.87 -0.09 -2.63 16
22 C -0.12 -4.28 8.94 22.27 0.20 -4.08 16
23 C -0.12 -3.48 10.05 22.27 0.22 -3.26 16
24 C -0.14 -3.84 10.05 22.27 0.22 -3.62 16
25 C -0.12 -3.84 10.05 22.27 0.22 -3.61 16
26 C -0.16 -6.18 8.15 22.27 0.18 -5.99 16
27 C 0.07 1.55 5.92 86.36 0.51 2.06 16
28 C 0.07 1.39 3.93 30.70 0.12 1.51 16
29 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16
30 C -0.18 -3.51 8.81 71.98 0.63 -2.87 16
31 O -0.37 -8.84 10.19 -144.54 -1.47 -10.31 16
32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16
33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16
34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16
35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16
36 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16
37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16
38 H 0.08 2.65 7.09 -2.39 -0.02 2.63 16
39 H 0.11 3.03 7.66 -2.39 -0.02 3.01 16
40 H 0.10 3.29 7.20 -2.39 -0.02 3.27 16
41 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16
42 H 0.12 4.10 7.37 -2.91 -0.02 4.07 16
43 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16
44 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16
45 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16
46 H 0.10 3.91 6.76 -2.91 -0.02 3.89 16
47 H 0.11 2.00 6.05 -2.39 -0.01 1.99 16
48 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16
49 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
50 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16
51 H 0.04 0.93 6.11 -2.39 -0.01 0.92 16
Total: -1.00 -81.38 398.42 3.52 -77.85
By element:
Atomic # 1 Polarization: 23.07 SS G_CDS: 0.80 Total: 23.86 kcal
Atomic # 6 Polarization: -24.23 SS G_CDS: 5.86 Total: -18.37 kcal
Atomic # 7 Polarization: -81.53 SS G_CDS: -1.77 Total: -83.31 kcal
Atomic # 8 Polarization: -46.83 SS G_CDS: -3.06 Total: -49.88 kcal
Atomic # 14 Polarization: 48.15 SS G_CDS: 1.70 Total: 49.85 kcal
Total: -81.38 3.52 -77.85 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000356980076.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.171 kcal
(2) G-P(sol) polarization free energy of solvation -81.376 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.547 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.853 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.025 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds