Wall clock time and date at job start Wed Apr 1 2020 04:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00197 * 2 1 4 4 C 1.52998 * 109.47356 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.51180 * 304.90008 * 4 3 2 6 6 C 1.52871 * 109.58574 * 184.87972 * 4 3 2 7 7 N 1.47149 * 108.60931 * 187.92678 * 6 4 3 8 8 C 1.34778 * 120.97978 * 230.50429 * 7 6 4 9 9 O 1.21283 * 120.00115 * 359.71390 * 8 7 6 10 10 C 1.50700 * 119.99954 * 179.71381 * 8 7 6 11 11 C 1.53001 * 109.47250 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.47326 * 305.00334 * 11 10 8 13 13 C 1.50703 * 109.46900 * 65.00451 * 11 10 8 14 14 H 1.07999 * 120.00275 * 34.53355 * 13 11 10 15 15 C 1.37878 * 119.99944 * 214.26828 * 13 11 10 16 16 N 1.31517 * 120.00191 * 353.44137 * 15 13 11 17 17 Si 1.86806 * 120.00167 * 173.45032 * 15 13 11 18 18 H 1.48498 * 109.46876 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47297 * 119.99533 * 17 15 13 20 20 H 1.48500 * 109.46731 * 239.99866 * 17 15 13 21 21 C 1.50699 * 109.47229 * 185.00073 * 11 10 8 22 22 C 1.38238 * 120.00104 * 298.71132 * 21 11 10 23 23 C 1.38233 * 120.00085 * 179.76253 * 22 21 11 24 24 C 1.38236 * 119.99647 * 0.51592 * 23 22 21 25 25 C 1.38234 * 120.00148 * 359.74274 * 24 23 22 26 26 C 1.38229 * 120.00057 * 118.99119 * 21 11 10 27 27 C 1.47152 * 118.03860 * 50.22603 * 7 6 4 28 28 C 1.53301 * 108.38292 * 309.71854 * 27 7 6 29 29 H 1.09000 * 109.50903 * 292.38076 * 28 27 7 30 30 C 1.52998 * 109.51058 * 172.27462 * 28 27 7 31 31 O 1.42961 * 109.22089 * 52.29944 * 28 27 7 32 32 H 1.09004 * 109.46847 * 299.99942 * 1 2 3 33 33 H 1.09001 * 109.46804 * 60.00081 * 1 2 3 34 34 H 1.08995 * 109.47431 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.47215 * 59.99912 * 3 2 1 36 36 H 1.09003 * 109.47065 * 300.00061 * 3 2 1 37 37 H 1.09006 * 109.61737 * 68.10704 * 6 4 3 38 38 H 1.09006 * 109.52528 * 307.68952 * 6 4 3 39 39 H 1.09002 * 109.47144 * 59.99904 * 10 8 7 40 40 H 1.08999 * 109.47543 * 299.99666 * 10 8 7 41 41 H 0.96992 * 120.00371 * 180.02562 * 16 15 13 42 42 H 1.07995 * 119.99890 * 0.02562 * 22 21 11 43 43 H 1.07995 * 120.00335 * 180.23089 * 23 22 21 44 44 H 1.08001 * 119.99827 * 179.71899 * 24 23 22 45 45 H 1.08003 * 120.00171 * 179.97438 * 25 24 23 46 46 H 1.08005 * 119.99968 * 359.97438 * 26 21 11 47 47 H 1.08998 * 109.67820 * 69.43934 * 27 7 6 48 48 H 1.09001 * 109.68183 * 189.99811 * 27 7 6 49 49 H 1.09000 * 109.47283 * 60.00334 * 30 28 27 50 50 H 1.09004 * 109.46679 * 179.97438 * 30 28 27 51 51 H 1.08996 * 109.47290 * 300.00014 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8517 0.5700 0.8435 6 6 4.1596 2.5747 0.1232 7 7 5.6135 2.4554 -0.0696 8 6 6.4771 2.9995 0.8106 9 8 6.0592 3.6028 1.7762 10 6 7.9618 2.8583 0.5950 11 6 8.7110 3.5616 1.7286 12 1 8.3782 4.5973 1.7965 13 6 8.4285 2.8569 3.0304 14 1 8.2942 1.7854 3.0464 15 6 8.3469 3.5794 4.2019 16 7 8.6419 4.8610 4.2060 17 14 7.8175 2.7378 5.7834 18 1 7.5432 1.3037 5.5131 19 1 8.9009 2.8534 6.7923 20 1 6.5869 3.3876 6.3018 21 6 10.1915 3.5270 1.4497 22 6 10.8475 2.3144 1.3477 23 6 12.2046 2.2825 1.0870 24 6 12.9079 3.4634 0.9389 25 6 12.2529 4.6760 1.0463 26 6 10.8948 4.7077 1.3017 27 6 6.0969 1.7190 -1.2484 28 6 5.3783 0.3658 -1.3012 29 1 5.7020 -0.2512 -0.4630 30 6 5.7151 -0.3405 -2.6159 31 8 3.9670 0.5789 -1.2204 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.6887 1.8463 0.8900 36 1 1.6887 1.8463 -0.8900 37 1 3.9528 2.9829 1.1125 38 1 3.7408 3.2307 -0.6401 39 1 8.2355 3.3124 -0.3574 40 1 8.2286 1.8015 0.5836 41 1 8.5849 5.3692 5.0302 42 1 10.2988 1.3919 1.4674 43 1 12.7164 1.3352 1.0035 44 1 13.9691 3.4386 0.7398 45 1 12.8024 5.5986 0.9311 46 1 10.3831 5.6552 1.3855 47 1 5.8764 2.2873 -2.1520 48 1 7.1722 1.5607 -1.1668 49 1 6.7918 -0.4987 -2.6780 50 1 5.2042 -1.3027 -2.6526 51 1 5.3896 0.2762 -3.4536 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356980077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:59 Heat of formation + Delta-G solvation = -118.340682 kcal Electronic energy + Delta-G solvation = -31474.952925 eV Core-core repulsion = 27338.681757 eV Total energy + Delta-G solvation = -4136.271168 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.44394 -40.08028 -39.41440 -38.52994 -35.92636 -35.61494 -34.44095 -33.38998 -31.49288 -31.14768 -30.32162 -28.41958 -27.50982 -27.11624 -25.90426 -24.27949 -23.13672 -22.98910 -22.22821 -21.36851 -19.97980 -18.51899 -18.21760 -18.06324 -17.58882 -17.24376 -16.85612 -16.58689 -16.44850 -16.22201 -16.10302 -15.81969 -15.69322 -15.37410 -14.81404 -14.65956 -14.37173 -14.18321 -13.99075 -13.71160 -13.58940 -13.44701 -13.30130 -13.19197 -13.04540 -12.94906 -12.86589 -12.59352 -12.49779 -12.46875 -12.38005 -11.98565 -11.82098 -11.70235 -11.66450 -11.31554 -11.12526 -10.96049 -10.67924 -10.63714 -10.36603 -9.52968 -9.50374 -9.18518 -8.06030 -6.07998 0.79235 0.85078 1.32626 1.36678 1.43747 1.82718 1.94977 2.44187 2.52864 2.77684 3.18779 3.34877 3.70393 3.73897 3.83009 3.96147 4.04932 4.12022 4.24722 4.28724 4.35303 4.36646 4.38267 4.40455 4.48302 4.51842 4.55205 4.55464 4.59942 4.61029 4.70654 4.73167 4.83102 4.85205 4.93221 4.96338 4.99371 5.07020 5.19849 5.33928 5.38076 5.48706 5.54424 5.63544 5.77985 5.85185 5.95881 6.10807 6.17594 6.20058 6.39205 6.46664 6.47384 6.99752 7.43158 7.54977 9.03705 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.003309 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.009512 B = 8458.558002 C =10160.955663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.075 3.925 4 C 0.088 3.912 5 H 0.048 0.952 6 C 0.088 3.912 7 N -0.628 5.628 8 C 0.515 3.485 9 O -0.552 6.552 10 C -0.111 4.111 11 C 0.084 3.916 12 H 0.023 0.977 13 C -0.485 4.485 14 H 0.045 0.955 15 C 0.026 3.974 16 N -0.915 5.915 17 Si 0.932 3.068 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.292 1.292 21 C -0.046 4.046 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.147 4.147 25 C -0.128 4.128 26 C -0.142 4.142 27 C 0.078 3.922 28 C 0.069 3.931 29 H 0.051 0.949 30 C -0.134 4.134 31 O -0.375 6.375 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.253 0.747 42 H 0.116 0.884 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.130 0.870 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.109 0.891 49 H 0.095 0.905 50 H 0.065 0.935 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 -9.093 -16.013 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.002 4.002 4 C 0.029 3.971 5 H 0.066 0.934 6 C -0.035 4.035 7 N -0.364 5.364 8 C 0.305 3.695 9 O -0.427 6.427 10 C -0.151 4.151 11 C 0.065 3.935 12 H 0.042 0.958 13 C -0.523 4.523 14 H 0.063 0.937 15 C -0.172 4.172 16 N -0.555 5.555 17 Si 0.759 3.241 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.219 1.219 21 C -0.047 4.047 22 C -0.146 4.146 23 C -0.143 4.143 24 C -0.165 4.165 25 C -0.146 4.146 26 C -0.160 4.160 27 C -0.044 4.044 28 C 0.010 3.990 29 H 0.069 0.931 30 C -0.191 4.191 31 O -0.294 6.294 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.062 0.938 42 H 0.134 0.866 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.148 0.852 46 H 0.110 0.890 47 H 0.110 0.890 48 H 0.127 0.873 49 H 0.114 0.886 50 H 0.084 0.916 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.552 -8.823 -15.503 19.004 hybrid contribution -0.626 0.408 1.839 1.986 sum -7.178 -8.415 -13.664 17.580 Atomic orbital electron populations 1.22946 0.79177 1.03907 1.01001 1.87887 1.21680 1.27817 1.95635 1.22450 0.89882 0.85448 1.02398 1.22228 0.94254 0.92813 0.87794 0.93399 1.21945 0.80952 0.96978 1.03614 1.48324 1.05695 1.56359 1.26017 1.21169 0.89809 0.77514 0.81038 1.90730 1.79705 1.42129 1.30147 1.21687 0.89843 1.03043 1.00550 1.17611 0.87416 0.96581 0.91883 0.95823 1.20992 1.46239 0.92737 0.92284 0.93681 1.25435 0.95190 0.95248 1.01363 1.70049 1.49927 1.08186 1.27301 0.85917 0.77630 0.79132 0.81411 1.19227 1.20703 1.21865 1.20539 0.97936 0.93117 0.93070 1.21027 0.95103 0.97235 1.01231 1.21364 0.93799 0.99084 1.00048 1.21261 1.00491 0.92049 1.02692 1.21278 0.93797 0.99001 1.00557 1.21081 0.95320 0.97513 1.02092 1.22691 1.01114 0.92735 0.87871 1.22660 0.80817 0.94916 1.00562 0.93106 1.21713 1.03148 1.00443 0.93842 1.87966 1.23117 1.81140 1.37172 0.93161 0.92797 0.88542 0.90428 0.90729 0.90125 0.89317 0.88944 0.88604 0.93751 0.86609 0.84067 0.83893 0.85162 0.88987 0.89042 0.87258 0.88644 0.91580 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -9.86 10.67 -144.44 -1.54 -11.40 16 3 C 0.08 1.64 5.60 71.98 0.40 2.04 16 4 C 0.09 2.34 3.05 30.55 0.09 2.43 16 5 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 6 C 0.09 2.55 5.90 86.21 0.51 3.06 16 7 N -0.63 -19.85 3.03 -818.14 -2.48 -22.33 16 8 C 0.51 21.25 7.46 87.66 0.65 21.90 16 9 O -0.55 -28.91 14.45 -3.04 -0.04 -28.95 16 10 C -0.11 -4.29 3.29 29.85 0.10 -4.19 16 11 C 0.08 4.14 1.67 -12.28 -0.02 4.12 16 12 H 0.02 1.37 6.98 -2.39 -0.02 1.36 16 13 C -0.48 -26.76 6.46 25.60 0.17 -26.59 16 14 H 0.04 2.47 7.82 -2.91 -0.02 2.44 16 15 C 0.03 1.55 5.45 84.65 0.46 2.01 16 16 N -0.91 -56.32 12.87 21.45 0.28 -56.05 16 17 Si 0.93 47.15 29.54 68.60 2.03 49.18 16 18 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 19 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 21 C -0.05 -2.04 4.77 -19.87 -0.09 -2.13 16 22 C -0.13 -4.87 8.86 22.27 0.20 -4.68 16 23 C -0.13 -3.96 10.05 22.27 0.22 -3.73 16 24 C -0.15 -4.49 10.05 22.27 0.22 -4.26 16 25 C -0.13 -4.47 10.05 22.27 0.22 -4.25 16 26 C -0.14 -6.07 9.67 22.27 0.22 -5.86 16 27 C 0.08 1.78 5.83 86.36 0.50 2.28 16 28 C 0.07 1.51 3.40 30.69 0.10 1.62 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 C -0.13 -2.02 9.57 71.98 0.69 -1.33 16 31 O -0.37 -9.66 10.00 -144.44 -1.44 -11.11 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 2.70 7.08 -2.38 -0.02 2.68 16 38 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 39 H 0.09 3.03 8.01 -2.39 -0.02 3.02 16 40 H 0.10 3.30 7.16 -2.39 -0.02 3.28 16 41 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 42 H 0.12 4.22 7.69 -2.91 -0.02 4.20 16 43 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 44 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 45 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 46 H 0.09 4.22 7.95 -2.91 -0.02 4.20 16 47 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.11 2.21 6.05 -2.39 -0.01 2.20 16 49 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 51 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -76.74 412.93 3.59 -73.15 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.89 Total: 23.43 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 5.90 Total: -15.92 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -2.20 Total: -78.37 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -3.03 Total: -51.46 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -76.74 3.59 -73.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356980077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.194 kcal (2) G-P(sol) polarization free energy of solvation -76.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds