Wall clock time and date at job start Wed Apr 1 2020 04:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99786 * 2 1 4 4 C 1.53001 * 109.46677 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.51697 * 305.00335 * 4 3 2 6 6 C 1.53294 * 109.51018 * 184.90003 * 4 3 2 7 7 N 1.47168 * 108.37775 * 187.83190 * 6 4 3 8 8 C 1.34780 * 120.94062 * 230.47704 * 7 6 4 9 9 O 1.21279 * 120.00167 * 359.97238 * 8 7 6 10 10 C 1.50704 * 119.99933 * 179.97438 * 8 7 6 11 11 C 1.52997 * 109.47116 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47174 * 54.99769 * 11 10 8 13 13 C 1.50700 * 109.47238 * 295.00041 * 11 10 8 14 14 H 1.08009 * 119.99715 * 334.72174 * 13 11 10 15 15 C 1.37875 * 120.00300 * 154.72173 * 13 11 10 16 16 N 1.31511 * 120.00474 * 184.85197 * 15 13 11 17 17 Si 1.86803 * 119.99617 * 4.85499 * 15 13 11 18 18 H 1.48500 * 109.47087 * 84.63650 * 17 15 13 19 19 H 1.48504 * 109.46794 * 204.63397 * 17 15 13 20 20 H 1.48500 * 109.47390 * 324.63271 * 17 15 13 21 21 C 1.50702 * 109.47054 * 174.99691 * 11 10 8 22 22 C 1.38230 * 119.99736 * 55.28115 * 21 11 10 23 23 C 1.38240 * 120.00022 * 179.76616 * 22 21 11 24 24 C 1.38229 * 119.99532 * 0.50071 * 23 22 21 25 25 C 1.38235 * 120.00529 * 359.75042 * 24 23 22 26 26 C 1.38229 * 119.99954 * 235.54805 * 21 11 10 27 27 C 1.47151 * 118.07601 * 50.44767 * 7 6 4 28 28 C 1.53294 * 108.38648 * 309.50544 * 27 7 6 29 29 H 1.09004 * 109.50929 * 292.37153 * 28 27 7 30 30 C 1.53007 * 109.55446 * 172.25133 * 28 27 7 31 31 O 1.42960 * 109.22531 * 52.30138 * 28 27 7 32 32 H 1.09002 * 109.47249 * 299.99905 * 1 2 3 33 33 H 1.08994 * 109.47323 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46847 * 60.00103 * 1 2 3 35 35 H 1.08997 * 109.47375 * 299.99543 * 3 2 1 36 36 H 1.09002 * 109.46956 * 59.99898 * 3 2 1 37 37 H 1.09007 * 109.67955 * 307.49846 * 6 4 3 38 38 H 1.08997 * 109.68654 * 68.05340 * 6 4 3 39 39 H 1.09004 * 109.46876 * 299.99955 * 10 8 7 40 40 H 1.08999 * 109.46903 * 59.99371 * 10 8 7 41 41 H 0.96998 * 120.00632 * 179.97438 * 16 15 13 42 42 H 1.08003 * 120.00458 * 359.97438 * 22 21 11 43 43 H 1.07999 * 120.00118 * 180.23232 * 23 22 21 44 44 H 1.08006 * 119.99977 * 179.72341 * 24 23 22 45 45 H 1.07992 * 120.00537 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00273 * 0.02562 * 26 21 11 47 47 H 1.09005 * 109.67812 * 189.77585 * 27 7 6 48 48 H 1.09006 * 109.68114 * 69.22685 * 27 7 6 49 49 H 1.08997 * 109.46551 * 300.22627 * 30 28 27 50 50 H 1.09003 * 109.46532 * 60.22474 * 30 28 27 51 51 H 1.08994 * 109.47137 * 180.22595 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8515 0.5686 0.8424 6 6 4.1595 2.5794 0.1241 7 7 5.6135 2.4557 -0.0670 8 6 6.4769 2.9989 0.8139 9 8 6.0589 3.6004 1.7805 10 6 7.9617 2.8589 0.5977 11 6 8.7107 3.5607 1.7323 12 1 8.3718 3.1660 2.6902 13 6 8.4372 5.0416 1.6743 14 1 8.1620 5.5036 0.7376 15 6 8.5383 5.8067 2.8168 16 7 8.2078 7.0792 2.7875 17 14 9.1450 5.0356 4.4064 18 1 10.6298 5.0490 4.4280 19 1 8.6262 5.8107 5.5620 20 1 8.6612 3.6343 4.4931 21 6 10.1904 3.3169 1.5838 22 6 10.8297 3.6446 0.4028 23 6 12.1880 3.4255 0.2682 24 6 12.9048 2.8690 1.3109 25 6 12.2646 2.5364 2.4900 26 6 10.9073 2.7604 2.6264 27 6 6.0969 1.7215 -1.2471 28 6 5.3784 0.3685 -1.3025 29 1 5.7021 -0.2501 -0.4654 30 6 5.7143 -0.3362 -2.6185 31 8 3.9671 0.5813 -1.2215 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5138 -0.8900 35 1 1.6887 1.8464 -0.8900 36 1 1.6885 1.8464 0.8900 37 1 3.7441 3.2364 -0.6402 38 1 3.9518 2.9884 1.1128 39 1 8.2289 1.8022 0.5845 40 1 8.2349 3.3146 -0.3540 41 1 8.2785 7.6174 3.5914 42 1 10.2687 4.0751 -0.4136 43 1 12.6881 3.6850 -0.6531 44 1 13.9652 2.6936 1.2042 45 1 12.8245 2.1012 3.3044 46 1 10.4069 2.4999 3.5474 47 1 7.1723 1.5631 -1.1657 48 1 5.8765 2.2914 -2.1498 49 1 5.3920 0.2838 -3.4550 50 1 6.7905 -0.4980 -2.6795 51 1 5.1996 -1.2961 -2.6582 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356980079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:03 Heat of formation + Delta-G solvation = -93.042021 kcal Electronic energy + Delta-G solvation = -31471.043879 eV Core-core repulsion = 27335.869743 eV Total energy + Delta-G solvation = -4135.174136 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.25179 -38.87069 -38.20589 -37.59242 -34.50655 -34.19393 -33.42687 -31.69863 -30.29340 -30.13445 -29.10871 -27.44106 -26.34451 -26.11401 -24.62900 -22.60478 -22.09610 -21.91717 -21.17975 -19.85836 -18.53227 -17.11180 -17.07331 -16.84677 -16.66194 -16.00638 -15.78173 -15.62011 -15.33615 -15.05450 -14.67231 -14.63233 -14.21430 -13.87604 -13.75903 -13.32133 -13.24857 -12.82226 -12.73685 -12.64679 -12.53640 -12.35428 -12.29025 -12.10015 -11.95078 -11.79300 -11.71377 -11.52200 -11.18619 -11.10237 -10.73997 -10.66966 -10.60116 -10.37516 -10.04600 -9.90529 -9.87984 -9.61620 -9.20502 -9.02927 -8.48837 -8.27673 -8.24373 -7.83257 -6.00633 -3.97026 2.04535 2.10937 3.07890 3.30557 3.39233 3.42527 3.43507 3.44184 3.64951 4.47439 4.53100 4.63497 4.74772 4.85529 4.92096 4.97597 5.00407 5.11404 5.18739 5.19599 5.27158 5.32711 5.33487 5.42709 5.43862 5.48209 5.50771 5.55946 5.61888 5.64704 5.75685 5.85791 5.86857 5.89461 5.94999 6.00259 6.03018 6.18004 6.28171 6.48273 6.62859 6.69448 6.78752 6.91869 7.00873 7.10344 7.11267 7.21348 7.55598 7.67508 7.76267 7.77943 8.50089 8.85031 8.98358 9.62366 11.12492 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012396 B = 0.003137 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.332151 B = 8924.349976 C =10352.993820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.072 3.928 4 C 0.083 3.917 5 H 0.070 0.930 6 C 0.089 3.911 7 N -0.631 5.631 8 C 0.519 3.481 9 O -0.494 6.494 10 C -0.112 4.112 11 C 0.048 3.952 12 H 0.054 0.946 13 C -0.483 4.483 14 H 0.071 0.929 15 C 0.083 3.917 16 N -0.897 5.897 17 Si 0.868 3.132 18 H -0.272 1.272 19 H -0.293 1.293 20 H -0.263 1.263 21 C -0.039 4.039 22 C -0.108 4.108 23 C -0.124 4.124 24 C -0.150 4.150 25 C -0.122 4.122 26 C -0.142 4.142 27 C 0.081 3.919 28 C 0.073 3.927 29 H 0.062 0.938 30 C -0.142 4.142 31 O -0.368 6.368 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.041 0.959 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.262 0.738 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.308 -15.204 -9.393 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.005 4.005 4 C 0.024 3.976 5 H 0.088 0.912 6 C -0.035 4.035 7 N -0.369 5.369 8 C 0.308 3.692 9 O -0.365 6.365 10 C -0.152 4.152 11 C 0.029 3.971 12 H 0.072 0.928 13 C -0.520 4.520 14 H 0.089 0.911 15 C -0.119 4.119 16 N -0.535 5.535 17 Si 0.696 3.304 18 H -0.198 1.198 19 H -0.219 1.219 20 H -0.188 1.188 21 C -0.039 4.039 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.168 4.168 25 C -0.140 4.140 26 C -0.160 4.160 27 C -0.042 4.042 28 C 0.014 3.986 29 H 0.080 0.920 30 C -0.199 4.199 31 O -0.287 6.287 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.136 0.864 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.115 0.885 48 H 0.091 0.909 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.546 -14.865 -8.848 18.496 hybrid contribution 0.346 0.214 1.081 1.156 sum -6.200 -14.651 -7.767 17.703 Atomic orbital electron populations 1.22742 0.81081 1.02720 0.99973 1.87932 1.19533 1.27337 1.95419 1.22465 0.91394 0.85367 1.01316 1.22425 0.92807 0.94104 0.88277 0.91212 1.21982 0.81449 0.95709 1.04343 1.48272 1.05458 1.57278 1.25922 1.20900 0.88913 0.77642 0.81765 1.90748 1.78839 1.38184 1.28703 1.21637 0.90695 1.00424 1.02474 1.18275 0.86046 0.97766 0.94999 0.92776 1.20599 1.45588 0.88994 0.96790 0.91057 1.24864 0.94106 0.94592 0.98350 1.69879 1.47914 1.06680 1.29019 0.87055 0.79502 0.79899 0.83919 1.19752 1.21924 1.18793 1.20762 0.98981 0.91756 0.92439 1.20926 0.93897 0.99617 0.98128 1.21046 0.94625 1.00083 0.98428 1.20860 0.98953 1.02657 0.94373 1.20966 0.94710 1.00973 0.97316 1.21084 0.94351 1.01425 0.99119 1.22408 1.00178 0.92634 0.89016 1.22494 0.81719 0.95169 0.99173 0.91962 1.21715 1.01763 1.00844 0.95609 1.87971 1.22018 1.81323 1.37396 0.94073 0.89671 0.94037 0.92130 0.91367 0.91120 0.87884 0.91196 0.89623 0.92795 0.86377 0.87104 0.87328 0.87294 0.87260 0.88524 0.90898 0.91610 0.90705 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.55 10.67 -39.87 -0.43 -4.97 16 3 C 0.07 0.78 5.60 37.16 0.21 0.99 16 4 C 0.08 1.04 3.06 -26.58 -0.08 0.96 16 5 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 6 C 0.09 1.25 5.93 -3.52 -0.02 1.23 16 7 N -0.63 -9.82 3.02 -172.26 -0.52 -10.34 16 8 C 0.52 10.22 7.46 -10.98 -0.08 10.14 16 9 O -0.49 -12.08 14.45 5.56 0.08 -12.00 16 10 C -0.11 -2.07 3.21 -27.88 -0.09 -2.16 16 11 C 0.05 1.10 1.24 -92.92 -0.12 0.99 16 12 H 0.05 1.34 5.26 -51.93 -0.27 1.06 16 13 C -0.48 -13.27 7.19 -34.44 -0.25 -13.52 16 14 H 0.07 2.13 8.05 -52.48 -0.42 1.71 16 15 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 16 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 17 Si 0.87 22.53 24.76 -169.99 -4.21 18.32 16 18 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 20 H -0.26 -6.53 5.95 56.52 0.34 -6.20 16 21 C -0.04 -0.81 4.30 -104.63 -0.45 -1.26 16 22 C -0.11 -2.03 8.94 -39.58 -0.35 -2.38 16 23 C -0.12 -2.05 10.05 -39.58 -0.40 -2.45 16 24 C -0.15 -2.43 10.05 -39.59 -0.40 -2.82 16 25 C -0.12 -2.11 10.05 -39.58 -0.40 -2.51 16 26 C -0.14 -2.82 8.15 -39.58 -0.32 -3.15 16 27 C 0.08 0.97 5.83 -3.53 -0.02 0.95 16 28 C 0.07 0.81 3.40 -26.58 -0.09 0.72 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 C -0.14 -1.19 9.57 37.16 0.36 -0.84 16 31 O -0.37 -4.77 9.99 -39.87 -0.40 -5.17 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 1.60 7.08 -51.93 -0.37 1.23 16 39 H 0.07 1.08 7.66 -51.93 -0.40 0.68 16 40 H 0.09 1.47 7.20 -51.93 -0.37 1.09 16 41 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 42 H 0.12 2.13 7.37 -52.48 -0.39 1.74 16 43 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 45 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.11 2.17 6.77 -52.49 -0.36 1.82 16 47 H 0.10 1.03 6.05 -51.93 -0.31 0.72 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 403.15 15.07 6.08 6.08 Total: -1.00 -35.08 403.15 -8.55 -43.63 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -8.43 Total: 3.15 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -1.49 Total: -11.40 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.25 Total: -37.64 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.74 Total: -22.14 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.21 Total: 18.32 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.08 -8.55 -43.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356980079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.414 kcal (2) G-P(sol) polarization free energy of solvation -35.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds