Wall clock time and date at job start Wed Apr 1 2020 04:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99786 * 2 1 4 4 C 1.53001 * 109.46677 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.51697 * 305.00335 * 4 3 2 6 6 C 1.53294 * 109.51018 * 184.90003 * 4 3 2 7 7 N 1.47168 * 108.37775 * 187.83190 * 6 4 3 8 8 C 1.34780 * 120.94062 * 230.47704 * 7 6 4 9 9 O 1.21279 * 120.00167 * 359.97238 * 8 7 6 10 10 C 1.50704 * 119.99933 * 179.97438 * 8 7 6 11 11 C 1.52997 * 109.47116 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47174 * 54.99769 * 11 10 8 13 13 C 1.50700 * 109.47238 * 295.00041 * 11 10 8 14 14 H 1.08009 * 119.99715 * 334.72174 * 13 11 10 15 15 C 1.37875 * 120.00300 * 154.72173 * 13 11 10 16 16 N 1.31511 * 120.00474 * 184.85197 * 15 13 11 17 17 Si 1.86803 * 119.99617 * 4.85499 * 15 13 11 18 18 H 1.48500 * 109.47087 * 84.63650 * 17 15 13 19 19 H 1.48504 * 109.46794 * 204.63397 * 17 15 13 20 20 H 1.48500 * 109.47390 * 324.63271 * 17 15 13 21 21 C 1.50702 * 109.47054 * 174.99691 * 11 10 8 22 22 C 1.38230 * 119.99736 * 55.28115 * 21 11 10 23 23 C 1.38240 * 120.00022 * 179.76616 * 22 21 11 24 24 C 1.38229 * 119.99532 * 0.50071 * 23 22 21 25 25 C 1.38235 * 120.00529 * 359.75042 * 24 23 22 26 26 C 1.38229 * 119.99954 * 235.54805 * 21 11 10 27 27 C 1.47151 * 118.07601 * 50.44767 * 7 6 4 28 28 C 1.53294 * 108.38648 * 309.50544 * 27 7 6 29 29 H 1.09004 * 109.50929 * 292.37153 * 28 27 7 30 30 C 1.53007 * 109.55446 * 172.25133 * 28 27 7 31 31 O 1.42960 * 109.22531 * 52.30138 * 28 27 7 32 32 H 1.09002 * 109.47249 * 299.99905 * 1 2 3 33 33 H 1.08994 * 109.47323 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46847 * 60.00103 * 1 2 3 35 35 H 1.08997 * 109.47375 * 299.99543 * 3 2 1 36 36 H 1.09002 * 109.46956 * 59.99898 * 3 2 1 37 37 H 1.09007 * 109.67955 * 307.49846 * 6 4 3 38 38 H 1.08997 * 109.68654 * 68.05340 * 6 4 3 39 39 H 1.09004 * 109.46876 * 299.99955 * 10 8 7 40 40 H 1.08999 * 109.46903 * 59.99371 * 10 8 7 41 41 H 0.96998 * 120.00632 * 179.97438 * 16 15 13 42 42 H 1.08003 * 120.00458 * 359.97438 * 22 21 11 43 43 H 1.07999 * 120.00118 * 180.23232 * 23 22 21 44 44 H 1.08006 * 119.99977 * 179.72341 * 24 23 22 45 45 H 1.07992 * 120.00537 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00273 * 0.02562 * 26 21 11 47 47 H 1.09005 * 109.67812 * 189.77585 * 27 7 6 48 48 H 1.09006 * 109.68114 * 69.22685 * 27 7 6 49 49 H 1.08997 * 109.46551 * 300.22627 * 30 28 27 50 50 H 1.09003 * 109.46532 * 60.22474 * 30 28 27 51 51 H 1.08994 * 109.47137 * 180.22595 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8515 0.5686 0.8424 6 6 4.1595 2.5794 0.1241 7 7 5.6135 2.4557 -0.0670 8 6 6.4769 2.9989 0.8139 9 8 6.0589 3.6004 1.7805 10 6 7.9617 2.8589 0.5977 11 6 8.7107 3.5607 1.7323 12 1 8.3718 3.1660 2.6902 13 6 8.4372 5.0416 1.6743 14 1 8.1620 5.5036 0.7376 15 6 8.5383 5.8067 2.8168 16 7 8.2078 7.0792 2.7875 17 14 9.1450 5.0356 4.4064 18 1 10.6298 5.0490 4.4280 19 1 8.6262 5.8107 5.5620 20 1 8.6612 3.6343 4.4931 21 6 10.1904 3.3169 1.5838 22 6 10.8297 3.6446 0.4028 23 6 12.1880 3.4255 0.2682 24 6 12.9048 2.8690 1.3109 25 6 12.2646 2.5364 2.4900 26 6 10.9073 2.7604 2.6264 27 6 6.0969 1.7215 -1.2471 28 6 5.3784 0.3685 -1.3025 29 1 5.7021 -0.2501 -0.4654 30 6 5.7143 -0.3362 -2.6185 31 8 3.9671 0.5813 -1.2215 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3633 0.5138 -0.8900 35 1 1.6887 1.8464 -0.8900 36 1 1.6885 1.8464 0.8900 37 1 3.7441 3.2364 -0.6402 38 1 3.9518 2.9884 1.1128 39 1 8.2289 1.8022 0.5845 40 1 8.2349 3.3146 -0.3540 41 1 8.2785 7.6174 3.5914 42 1 10.2687 4.0751 -0.4136 43 1 12.6881 3.6850 -0.6531 44 1 13.9652 2.6936 1.2042 45 1 12.8245 2.1012 3.3044 46 1 10.4069 2.4999 3.5474 47 1 7.1723 1.5631 -1.1657 48 1 5.8765 2.2914 -2.1498 49 1 5.3920 0.2838 -3.4550 50 1 6.7905 -0.4980 -2.6795 51 1 5.1996 -1.2961 -2.6582 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356980079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:02 Heat of formation + Delta-G solvation = -116.506639 kcal Electronic energy + Delta-G solvation = -31472.061381 eV Core-core repulsion = 27335.869743 eV Total energy + Delta-G solvation = -4136.191638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.49511 -40.23863 -39.49114 -38.53546 -36.01644 -35.67470 -34.43796 -33.71924 -31.65919 -31.17891 -30.40941 -28.60388 -27.67807 -27.15820 -25.88114 -24.17564 -23.33285 -23.00048 -22.26196 -21.35129 -19.97557 -19.06138 -18.30648 -18.07382 -17.59552 -17.33308 -16.93284 -16.58527 -16.46624 -16.38105 -16.10545 -15.87198 -15.67513 -15.39026 -14.86766 -14.79380 -14.58792 -14.32911 -14.13982 -13.90990 -13.70379 -13.62425 -13.34725 -13.31610 -13.05577 -12.95121 -12.91994 -12.65751 -12.54341 -12.40094 -12.12585 -11.99075 -11.90759 -11.81249 -11.69448 -11.48310 -11.15003 -11.07653 -10.77216 -10.67890 -10.52503 -9.63846 -9.54213 -9.32070 -8.24906 -6.21165 0.65154 0.71031 1.28272 1.31314 1.36694 1.78777 1.87034 2.36023 2.52828 2.76985 3.05262 3.18134 3.65496 3.70301 3.81168 3.95412 4.02363 4.05847 4.11743 4.25237 4.26982 4.28157 4.33297 4.37147 4.39373 4.46267 4.47858 4.53803 4.55499 4.57950 4.60366 4.70647 4.78966 4.83528 4.84808 4.85731 4.95895 5.01319 5.06535 5.19520 5.33381 5.35470 5.37472 5.46318 5.67238 5.74959 5.79833 5.99285 6.10897 6.19660 6.28437 6.32692 6.41179 6.77313 7.34867 7.40843 8.92335 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012396 B = 0.003137 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.332151 B = 8924.349976 C =10352.993820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.074 3.926 4 C 0.091 3.909 5 H 0.056 0.944 6 C 0.087 3.913 7 N -0.626 5.626 8 C 0.513 3.487 9 O -0.557 6.557 10 C -0.106 4.106 11 C 0.052 3.948 12 H 0.030 0.970 13 C -0.461 4.461 14 H 0.034 0.966 15 C 0.020 3.980 16 N -0.952 5.952 17 Si 0.920 3.080 18 H -0.259 1.259 19 H -0.301 1.301 20 H -0.252 1.252 21 C -0.063 4.063 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.140 4.140 25 C -0.124 4.124 26 C -0.162 4.162 27 C 0.076 3.924 28 C 0.071 3.929 29 H 0.058 0.942 30 C -0.135 4.135 31 O -0.376 6.376 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.259 0.741 42 H 0.118 0.882 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.137 0.863 46 H 0.101 0.899 47 H 0.113 0.887 48 H 0.085 0.915 49 H 0.069 0.931 50 H 0.096 0.904 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.307 -17.914 -11.146 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C -0.003 4.003 4 C 0.032 3.968 5 H 0.074 0.926 6 C -0.036 4.036 7 N -0.362 5.362 8 C 0.303 3.697 9 O -0.433 6.433 10 C -0.146 4.146 11 C 0.032 3.968 12 H 0.048 0.952 13 C -0.499 4.499 14 H 0.053 0.947 15 C -0.176 4.176 16 N -0.594 5.594 17 Si 0.746 3.254 18 H -0.184 1.184 19 H -0.228 1.228 20 H -0.177 1.177 21 C -0.064 4.064 22 C -0.138 4.138 23 C -0.137 4.137 24 C -0.158 4.158 25 C -0.142 4.142 26 C -0.181 4.181 27 C -0.046 4.046 28 C 0.012 3.988 29 H 0.076 0.924 30 C -0.193 4.193 31 O -0.296 6.296 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.136 0.864 43 H 0.162 0.838 44 H 0.166 0.834 45 H 0.155 0.845 46 H 0.119 0.881 47 H 0.132 0.868 48 H 0.104 0.896 49 H 0.088 0.912 50 H 0.115 0.885 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.546 -17.646 -10.662 21.112 hybrid contribution -0.269 0.948 1.461 1.762 sum -4.815 -16.699 -9.201 19.664 Atomic orbital electron populations 1.22946 0.79211 1.03932 1.00960 1.87880 1.21628 1.27686 1.95631 1.22455 0.90073 0.85471 1.02333 1.22289 0.94061 0.92467 0.87944 0.92572 1.22054 0.80862 0.97138 1.03596 1.48278 1.05754 1.56156 1.25983 1.21181 0.89901 0.77100 0.81527 1.90722 1.79828 1.41314 1.31431 1.21575 0.89455 1.02216 1.01358 1.18094 0.88554 0.94616 0.95513 0.95161 1.20820 1.42846 0.91505 0.94744 0.94731 1.25601 0.95324 0.94978 1.01675 1.70028 1.51401 1.08301 1.29634 0.86220 0.79551 0.79403 0.80177 1.18432 1.22789 1.17692 1.20477 0.97251 0.94519 0.94127 1.21041 0.95335 0.99948 0.97486 1.21435 0.93559 0.98731 0.99997 1.21351 1.00796 1.00419 0.93239 1.21325 0.93673 1.00336 0.98843 1.21183 0.95826 1.02491 0.98555 1.22730 1.01335 0.92863 0.87676 1.22665 0.80713 0.94636 1.00738 0.92353 1.21724 1.03225 1.00471 0.93847 1.87979 1.23204 1.81146 1.37225 0.93107 0.88430 0.93009 0.91130 0.90328 0.90015 0.89926 0.87597 0.88165 0.93223 0.86402 0.83767 0.83447 0.84474 0.88110 0.86840 0.89640 0.91224 0.88513 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -9.36 10.67 -144.55 -1.54 -10.90 16 3 C 0.07 1.56 5.60 71.98 0.40 1.96 16 4 C 0.09 2.30 3.06 30.69 0.09 2.39 16 5 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 6 C 0.09 2.51 5.93 86.35 0.51 3.02 16 7 N -0.63 -19.50 3.02 -817.29 -2.47 -21.97 16 8 C 0.51 20.72 7.46 87.66 0.65 21.38 16 9 O -0.56 -28.78 14.45 -3.03 -0.04 -28.82 16 10 C -0.11 -3.89 3.21 29.85 0.10 -3.79 16 11 C 0.05 2.38 1.24 -12.29 -0.02 2.36 16 12 H 0.03 1.53 5.26 -2.39 -0.01 1.52 16 13 C -0.46 -26.43 7.19 25.60 0.18 -26.24 16 14 H 0.03 2.17 8.05 -2.91 -0.02 2.15 16 15 C 0.02 1.26 5.47 84.65 0.46 1.72 16 16 N -0.95 -62.70 13.96 21.45 0.30 -62.40 16 17 Si 0.92 48.16 24.76 68.60 1.70 49.86 16 18 H -0.26 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.30 -15.91 7.11 99.48 0.71 -15.21 16 20 H -0.25 -12.60 5.95 99.48 0.59 -12.00 16 21 C -0.06 -2.57 4.30 -19.87 -0.09 -2.66 16 22 C -0.12 -4.29 8.94 22.27 0.20 -4.09 16 23 C -0.12 -3.48 10.05 22.27 0.22 -3.25 16 24 C -0.14 -3.84 10.05 22.27 0.22 -3.62 16 25 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 26 C -0.16 -6.19 8.15 22.27 0.18 -6.01 16 27 C 0.08 1.68 5.83 86.35 0.50 2.18 16 28 C 0.07 1.44 3.40 30.69 0.10 1.54 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 C -0.14 -1.89 9.57 71.98 0.69 -1.20 16 31 O -0.38 -9.30 9.99 -144.55 -1.44 -10.74 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 34 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.08 2.74 7.08 -2.39 -0.02 2.72 16 39 H 0.11 3.08 7.66 -2.38 -0.02 3.06 16 40 H 0.10 3.35 7.20 -2.39 -0.02 3.33 16 41 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 42 H 0.12 4.10 7.37 -2.91 -0.02 4.08 16 43 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 44 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 45 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 46 H 0.10 3.92 6.77 -2.91 -0.02 3.90 16 47 H 0.11 2.11 6.05 -2.38 -0.01 2.10 16 48 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 49 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -81.43 403.15 3.19 -78.24 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.79 Total: 23.05 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 5.90 Total: -16.31 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -2.17 Total: -84.37 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -3.03 Total: -50.46 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 1.70 Total: 49.86 kcal Total: -81.43 3.19 -78.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356980079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.267 kcal (2) G-P(sol) polarization free energy of solvation -81.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds