Wall clock time and date at job start Wed Apr 1 2020 05:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00306 * 2 1 4 4 C 1.52996 * 109.45717 * 63.38532 * 3 2 1 5 5 O 1.42895 * 109.47237 * 59.23039 * 4 3 2 6 6 C 1.53034 * 109.46026 * 183.36041 * 3 2 1 7 7 C 1.53199 * 109.31501 * 58.62536 * 6 3 2 8 8 N 1.46927 * 108.75943 * 54.65656 * 7 6 3 9 9 C 1.34779 * 120.62923 * 126.36525 * 8 7 6 10 10 O 1.21283 * 119.99973 * 180.02562 * 9 8 7 11 11 C 1.50700 * 120.00055 * 0.02562 * 9 8 7 12 12 C 1.52999 * 109.47114 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46910 * 304.99901 * 12 11 9 14 14 C 1.50693 * 109.47210 * 65.00123 * 12 11 9 15 15 H 1.08003 * 120.00171 * 235.70086 * 14 12 11 16 16 C 1.37879 * 119.99885 * 55.70001 * 14 12 11 17 17 N 1.31519 * 119.99987 * 2.15074 * 16 14 12 18 18 Si 1.86805 * 120.00169 * 182.15490 * 16 14 12 19 19 H 1.48502 * 109.47109 * 89.99410 * 18 16 14 20 20 H 1.48493 * 109.46973 * 209.99837 * 18 16 14 21 21 H 1.48507 * 109.46655 * 330.00064 * 18 16 14 22 22 C 1.50700 * 109.47051 * 185.00534 * 12 11 9 23 23 C 1.38235 * 120.00377 * 151.67977 * 22 12 11 24 24 C 1.38231 * 120.00394 * 179.80881 * 23 22 12 25 25 C 1.38234 * 119.99825 * 0.39070 * 24 23 22 26 26 C 1.38238 * 120.00197 * 359.86145 * 25 24 23 27 27 C 1.38236 * 119.99613 * 359.95006 * 26 25 24 28 28 C 1.46921 * 118.74160 * 306.38000 * 8 7 6 29 29 C 1.53039 * 109.45732 * 303.41353 * 3 2 1 30 30 H 1.08997 * 109.47259 * 65.21664 * 1 2 3 31 31 H 1.09002 * 109.47338 * 185.21962 * 1 2 3 32 32 H 1.08999 * 109.46932 * 305.21519 * 1 2 3 33 33 H 1.08998 * 109.47124 * 299.22293 * 4 3 2 34 34 H 1.09002 * 109.46677 * 179.22484 * 4 3 2 35 35 H 0.96703 * 113.99855 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.49959 * 178.59178 * 6 3 2 37 37 H 1.09002 * 109.49986 * 298.68477 * 6 3 2 38 38 H 1.08990 * 109.59700 * 294.86981 * 7 6 3 39 39 H 1.08999 * 109.58472 * 174.43132 * 7 6 3 40 40 H 1.08995 * 109.47214 * 300.00526 * 11 9 8 41 41 H 1.09004 * 109.46897 * 60.00356 * 11 9 8 42 42 H 0.96996 * 119.99845 * 180.02562 * 17 16 14 43 43 H 1.08000 * 119.99497 * 359.97438 * 23 22 12 44 44 H 1.07998 * 120.00419 * 180.23243 * 24 23 22 45 45 H 1.08001 * 120.00507 * 179.83918 * 25 24 23 46 46 H 1.07996 * 120.00230 * 179.97438 * 26 25 24 47 47 H 1.08010 * 119.99801 * 179.97438 * 27 26 25 48 48 H 1.09001 * 109.58628 * 293.82486 * 28 8 7 49 49 H 1.08998 * 109.58971 * 173.40386 * 28 8 7 50 50 H 1.09000 * 109.49711 * 61.30925 * 29 3 2 51 51 H 1.08998 * 109.50133 * 181.37383 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.6272 2.0339 1.2897 5 8 2.0950 1.2879 2.4151 6 6 3.5335 1.1852 -0.0846 7 6 3.9118 0.4247 -1.3595 8 7 3.2949 1.0968 -2.5112 9 6 4.0432 1.4791 -3.5650 10 8 3.5221 2.0334 -4.5095 11 6 5.5273 1.2177 -3.5696 12 6 6.1343 1.7467 -4.8706 13 1 5.6127 1.3061 -5.7204 14 6 5.9935 3.2463 -4.9173 15 1 5.4975 3.7164 -5.7536 16 6 6.4979 4.0183 -3.8923 17 7 7.1390 3.4493 -2.8947 18 14 6.2706 5.8722 -3.9202 19 1 5.0039 6.2261 -3.2307 20 1 7.4109 6.5212 -3.2248 21 1 6.2162 6.3430 -5.3277 22 6 7.5940 1.3770 -4.9307 23 6 8.2122 1.1986 -6.1542 24 6 9.5521 0.8634 -6.2093 25 6 10.2719 0.6985 -5.0408 26 6 9.6526 0.8717 -3.8171 27 6 8.3136 1.2108 -3.7621 28 6 1.8468 1.3445 -2.4923 29 6 1.4917 2.0944 -1.2045 30 1 -0.3633 0.4308 -0.9330 31 1 -0.3634 -1.0234 0.0935 32 1 -0.3633 0.5926 0.8396 33 1 0.5429 2.1314 1.3436 34 1 2.0818 3.0246 1.2962 35 1 1.8866 1.6916 3.2688 36 1 3.9762 2.1810 -0.1098 37 1 3.9046 0.6436 0.7855 38 1 3.5465 -0.6002 -1.2958 39 1 4.9956 0.4221 -1.4754 40 1 5.9882 1.7243 -2.7217 41 1 5.7076 0.1453 -3.4939 42 1 7.4935 3.9924 -2.1735 43 1 7.6488 1.3239 -7.0671 44 1 10.0360 0.7278 -7.1653 45 1 11.3182 0.4341 -5.0837 46 1 10.2149 0.7425 -2.9042 47 1 7.8295 1.3457 -2.8060 48 1 1.3132 0.3945 -2.5210 49 1 1.5681 1.9487 -3.3557 50 1 0.4093 2.1999 -1.1316 51 1 1.9533 3.0817 -1.2188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357113639.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:08 Heat of formation + Delta-G solvation = -114.304627 kcal Electronic energy + Delta-G solvation = -32456.812225 eV Core-core repulsion = 28320.716073 eV Total energy + Delta-G solvation = -4136.096152 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.48355 -40.24596 -39.48721 -37.23678 -36.78536 -36.01442 -33.30878 -32.91541 -32.29625 -31.39371 -30.06386 -28.54865 -27.65092 -27.41371 -24.77239 -24.18015 -23.63758 -22.89839 -21.61237 -20.96478 -19.81848 -18.38287 -18.26512 -17.95734 -17.13263 -17.09288 -16.87101 -16.64062 -16.49829 -16.19929 -15.99855 -15.44679 -15.39109 -14.96003 -14.81558 -14.45648 -14.41114 -14.17598 -13.82355 -13.73896 -13.51458 -13.40254 -13.32825 -13.15917 -13.12869 -13.00638 -12.80031 -12.67336 -12.27750 -12.24384 -12.19914 -11.91659 -11.85113 -11.67941 -11.30422 -11.06447 -11.02562 -10.90822 -10.55094 -10.43690 -10.23469 -9.46147 -9.38848 -9.10541 -7.93299 -6.08698 0.89680 1.00969 1.35493 1.37852 1.46545 2.00633 2.24835 2.45416 2.75104 3.21221 3.29643 3.38473 3.63680 3.66395 3.96776 4.10273 4.17920 4.28849 4.34340 4.35176 4.39928 4.42500 4.47066 4.51123 4.53134 4.56261 4.64448 4.69854 4.74189 4.79189 4.82429 4.89614 4.91318 4.92932 5.00017 5.07537 5.09379 5.15603 5.24913 5.38651 5.54655 5.63563 5.68386 5.79539 5.91366 5.95725 6.10322 6.32481 6.37613 6.43268 6.58976 6.64041 6.85173 6.89842 7.52702 7.57120 8.96528 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012735 B = 0.003443 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.075874 B = 8129.467172 C = 8677.976748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.380 6.380 3 C 0.124 3.876 4 C 0.056 3.944 5 O -0.575 6.575 6 C -0.110 4.110 7 C 0.115 3.885 8 N -0.620 5.620 9 C 0.521 3.479 10 O -0.575 6.575 11 C -0.124 4.124 12 C 0.088 3.912 13 H 0.011 0.989 14 C -0.490 4.490 15 H 0.026 0.974 16 C 0.036 3.964 17 N -0.884 5.884 18 Si 0.928 3.072 19 H -0.285 1.285 20 H -0.277 1.277 21 H -0.285 1.285 22 C -0.051 4.051 23 C -0.152 4.152 24 C -0.140 4.140 25 C -0.148 4.148 26 C -0.146 4.146 27 C -0.081 4.081 28 C 0.119 3.881 29 C -0.152 4.152 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.395 0.605 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.068 0.932 42 H 0.262 0.738 43 H 0.102 0.898 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.127 0.873 47 H 0.130 0.870 48 H 0.076 0.924 49 H 0.068 0.932 50 H 0.102 0.898 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.304 -6.613 11.749 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.300 6.300 3 C 0.085 3.915 4 C -0.022 4.022 5 O -0.383 6.383 6 C -0.148 4.148 7 C -0.007 4.007 8 N -0.355 5.355 9 C 0.312 3.688 10 O -0.453 6.453 11 C -0.164 4.164 12 C 0.069 3.931 13 H 0.030 0.970 14 C -0.528 4.528 15 H 0.044 0.956 16 C -0.163 4.163 17 N -0.523 5.523 18 Si 0.757 3.243 19 H -0.211 1.211 20 H -0.202 1.202 21 H -0.211 1.211 22 C -0.051 4.051 23 C -0.171 4.171 24 C -0.157 4.157 25 C -0.166 4.166 26 C -0.164 4.164 27 C -0.099 4.099 28 C -0.003 4.003 29 C -0.190 4.190 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.244 0.756 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.144 0.856 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.120 0.880 44 H 0.150 0.850 45 H 0.154 0.846 46 H 0.145 0.855 47 H 0.148 0.852 48 H 0.094 0.906 49 H 0.086 0.914 50 H 0.120 0.880 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.162 -6.812 10.944 15.258 hybrid contribution -0.682 2.133 0.091 2.242 sum -8.844 -4.679 11.035 14.896 Atomic orbital electron populations 1.22940 0.80580 1.03601 1.00585 1.87978 1.20622 1.26484 1.94872 1.21422 0.93964 0.83828 0.92325 1.22692 0.98872 0.94277 0.86344 1.86503 1.82254 1.52406 1.17141 1.21760 0.93347 1.01455 0.98266 1.21693 0.98804 0.96175 0.84013 1.48232 1.08089 1.60176 1.19002 1.21221 0.90236 0.76259 0.81097 1.90563 1.74635 1.43324 1.36812 1.21768 0.90034 0.99768 1.04829 1.17535 0.88518 0.94519 0.92532 0.97034 1.20913 1.34643 0.91753 1.05446 0.95566 1.25203 0.94953 1.00441 0.95734 1.69728 1.37070 1.34912 1.10588 0.86020 0.77363 0.83454 0.77503 1.21143 1.20243 1.21094 1.20297 0.97846 0.93795 0.93200 1.21075 0.95908 1.02915 0.97160 1.21152 0.93718 1.01916 0.98963 1.21201 1.00168 1.02879 0.92372 1.21371 0.95240 1.01615 0.98187 1.21308 0.94114 0.95652 0.98873 1.21360 0.80965 1.00230 0.97794 1.22414 1.02957 0.99363 0.94306 0.93371 0.88806 0.92985 0.91543 0.92407 0.75602 0.91369 0.88920 0.90299 0.89594 0.85558 0.91412 0.92826 0.88016 0.85014 0.84569 0.85491 0.85240 0.90602 0.91386 0.87995 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.03 113.37 1.14 1.45 16 2 O -0.38 -8.93 8.95 -139.16 -1.25 -10.17 16 3 C 0.12 2.87 0.49 -10.77 -0.01 2.86 16 4 C 0.06 1.02 5.65 71.98 0.41 1.43 16 5 O -0.58 -10.62 12.87 -139.16 -1.79 -12.41 16 6 C -0.11 -2.94 4.99 30.67 0.15 -2.79 16 7 C 0.12 3.46 6.10 86.36 0.53 3.99 16 8 N -0.62 -22.23 2.97 -818.91 -2.43 -24.66 16 9 C 0.52 23.59 7.45 87.66 0.65 24.25 16 10 O -0.57 -30.52 14.40 -3.04 -0.04 -30.56 16 11 C -0.12 -5.59 2.42 29.85 0.07 -5.52 16 12 C 0.09 4.49 1.97 -12.29 -0.02 4.46 16 13 H 0.01 0.61 7.91 -2.39 -0.02 0.59 16 14 C -0.49 -27.65 7.27 25.60 0.19 -27.47 16 15 H 0.03 1.59 7.81 -2.91 -0.02 1.57 16 16 C 0.04 1.94 5.14 84.65 0.44 2.37 16 17 N -0.88 -45.05 7.98 21.45 0.17 -44.88 16 18 Si 0.93 44.61 29.54 68.60 2.03 46.64 16 19 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 22 C -0.05 -2.39 4.68 -19.87 -0.09 -2.48 16 23 C -0.15 -6.62 9.71 22.27 0.22 -6.41 16 24 C -0.14 -5.12 10.05 22.27 0.22 -4.90 16 25 C -0.15 -5.12 10.05 22.27 0.22 -4.90 16 26 C -0.15 -5.48 10.05 22.27 0.22 -5.26 16 27 C -0.08 -3.53 7.47 22.27 0.17 -3.37 16 28 C 0.12 3.66 6.15 86.36 0.53 4.19 16 29 C -0.15 -3.68 4.38 30.67 0.13 -3.55 16 30 H 0.05 0.74 6.33 -2.39 -0.02 0.72 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 0.72 6.28 -2.39 -0.01 0.71 16 33 H 0.07 0.93 6.54 -2.39 -0.02 0.92 16 34 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 35 H 0.39 3.51 9.12 -74.06 -0.68 2.83 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 2.38 7.66 -2.39 -0.02 2.36 16 38 H 0.08 2.20 7.81 -2.39 -0.02 2.18 16 39 H 0.09 2.66 5.93 -2.39 -0.01 2.64 16 40 H 0.13 5.91 4.23 -2.39 -0.01 5.90 16 41 H 0.07 2.74 7.94 -2.39 -0.02 2.72 16 42 H 0.26 12.88 8.31 -92.71 -0.77 12.11 16 43 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 44 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 45 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 46 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 47 H 0.13 5.81 5.19 -2.91 -0.02 5.79 16 48 H 0.08 2.09 7.38 -2.39 -0.02 2.08 16 49 H 0.07 2.40 7.00 -2.39 -0.02 2.39 16 50 H 0.10 1.87 6.69 -2.39 -0.02 1.85 16 51 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -68.79 389.02 2.12 -66.67 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.27 Total: 31.02 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 5.17 Total: -21.63 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -2.26 Total: -69.55 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -3.08 Total: -53.14 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.79 2.12 -66.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357113639.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.633 kcal (2) G-P(sol) polarization free energy of solvation -68.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds