Wall clock time and date at job start Wed Apr 1 2020 04:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87166 * 2 1 4 4 O 1.43740 * 109.87755 * 238.83975 * 2 1 3 5 5 C 1.44385 * 106.97599 * 267.09015 * 4 2 1 6 6 C 1.55227 * 103.56302 * 320.00922 * 5 4 2 7 7 C 1.54102 * 109.88122 * 121.00675 * 2 1 3 8 8 O 1.42899 * 110.48391 * 358.58512 * 7 2 1 9 9 C 1.52995 * 110.48977 * 236.06965 * 7 2 1 10 10 N 1.46496 * 109.47043 * 192.95580 * 9 7 2 11 11 C 1.46501 * 119.99936 * 277.91263 * 10 9 7 12 12 C 1.50699 * 109.47179 * 275.69589 * 11 10 9 13 13 C 1.38236 * 119.99965 * 269.72483 * 12 11 10 14 14 C 1.38242 * 120.00118 * 179.80883 * 13 12 11 15 15 C 1.38233 * 119.99839 * 0.42275 * 14 13 12 16 16 C 1.38236 * 119.99996 * 359.80926 * 15 14 13 17 17 C 1.38234 * 120.00111 * 0.02562 * 16 15 14 18 18 C 1.34773 * 120.00182 * 97.91522 * 10 9 7 19 19 O 1.21283 * 119.99928 * 186.93541 * 18 10 9 20 20 C 1.50702 * 119.99973 * 6.93679 * 18 10 9 21 21 C 1.52993 * 109.47111 * 173.95892 * 20 18 10 22 22 C 1.50702 * 109.47183 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99916 * 0.02562 * 22 21 20 24 24 C 1.37876 * 119.99998 * 179.97438 * 22 21 20 25 25 N 1.31513 * 120.00411 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99708 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47325 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47124 * 120.00013 * 26 24 22 29 29 H 1.48503 * 109.46785 * 239.99847 * 26 24 22 30 30 H 1.09010 * 109.47089 * 298.99227 * 1 2 3 31 31 H 1.09000 * 109.47533 * 58.98910 * 1 2 3 32 32 H 1.08994 * 109.47221 * 178.99812 * 1 2 3 33 33 H 1.08996 * 110.61722 * 78.44209 * 5 4 2 34 34 H 1.08998 * 110.61238 * 201.28237 * 5 4 2 35 35 H 1.08995 * 110.89212 * 278.74940 * 6 5 4 36 36 H 1.08995 * 111.01944 * 155.07006 * 6 5 4 37 37 H 0.96708 * 113.99787 * 155.12520 * 8 7 2 38 38 H 1.09005 * 109.46972 * 72.95627 * 9 7 2 39 39 H 1.08997 * 109.47167 * 312.95663 * 9 7 2 40 40 H 1.08994 * 109.47352 * 35.69740 * 11 10 9 41 41 H 1.09002 * 109.47115 * 155.69546 * 11 10 9 42 42 H 1.07999 * 120.00247 * 0.02562 * 13 12 11 43 43 H 1.08000 * 119.99965 * 180.21399 * 14 13 12 44 44 H 1.08000 * 120.00003 * 179.79361 * 15 14 13 45 45 H 1.08002 * 120.00009 * 179.97438 * 16 15 14 46 46 H 1.08003 * 120.00137 * 179.97438 * 17 16 15 47 47 H 1.09003 * 109.47351 * 53.95543 * 20 18 10 48 48 H 1.09001 * 109.46834 * 293.95545 * 20 18 10 49 49 H 1.09001 * 109.47769 * 59.99858 * 21 20 18 50 50 H 1.08993 * 109.47226 * 299.99851 * 21 20 18 51 51 H 0.96998 * 120.00354 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0187 -0.6994 -1.1567 5 6 2.2280 -2.0724 -0.7620 6 6 2.8317 -1.9535 0.6631 7 6 2.0540 -0.7465 1.2421 8 8 0.9656 -1.1949 2.0523 9 6 2.9884 0.1534 2.0531 10 7 3.7097 -0.6545 3.0396 11 6 3.0701 -1.0012 4.3112 12 6 3.2563 0.1281 5.2915 13 6 4.3601 0.1463 6.1235 14 6 4.5330 1.1842 7.0200 15 6 3.5975 2.1995 7.0907 16 6 2.4912 2.1788 6.2621 17 6 2.3201 1.1427 5.3632 18 6 4.9618 -1.0788 2.7775 19 8 5.5119 -1.8497 3.5350 20 6 5.6783 -0.5951 1.5430 21 6 7.1219 -1.1015 1.5599 22 6 7.8382 -0.6184 0.3252 23 1 7.3161 -0.0106 -0.3990 24 6 9.1604 -0.9514 0.1205 25 7 9.7964 -1.6911 1.0025 26 14 10.0484 -0.3520 -1.4098 27 1 9.1179 0.4572 -2.2371 28 1 11.2105 0.4830 -1.0126 29 1 10.5230 -1.5191 -2.1957 30 1 -0.3634 0.4981 0.8990 31 1 -0.3634 0.5294 -0.8808 32 1 -0.3633 -1.0274 -0.0180 33 1 1.2813 -2.6118 -0.7322 34 1 2.9273 -2.5639 -1.4384 35 1 3.8998 -1.7416 0.6163 36 1 2.6404 -2.8549 1.2453 37 1 1.1764 -1.9589 2.6064 38 1 2.4031 0.9163 2.5664 39 1 3.7028 0.6327 1.3838 40 1 2.0055 -1.1692 4.1485 41 1 3.5241 -1.9079 4.7110 42 1 5.0893 -0.6486 6.0706 43 1 5.3972 1.2002 7.6676 44 1 3.7308 3.0087 7.7934 45 1 1.7601 2.9718 6.3176 46 1 1.4555 1.1263 4.7161 47 1 5.6756 0.4947 1.5248 48 1 5.1706 -0.9745 0.6562 49 1 7.1246 -2.1913 1.5780 50 1 7.6296 -0.7222 2.4467 51 1 10.7267 -1.9251 0.8587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360470828.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:03 Heat of formation + Delta-G solvation = -125.764528 kcal Electronic energy + Delta-G solvation = -32281.220437 eV Core-core repulsion = 28144.627346 eV Total energy + Delta-G solvation = -4136.593090 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.88974 -40.56431 -39.81726 -37.60965 -36.11854 -35.65299 -33.70830 -32.57844 -32.20738 -31.78673 -31.68574 -29.02302 -28.37876 -26.57918 -25.39333 -23.61012 -23.45292 -23.01922 -22.12796 -21.50419 -19.99247 -18.92282 -18.07404 -17.86324 -17.79376 -17.23820 -17.19427 -16.84985 -16.43513 -16.42980 -15.95939 -15.84361 -15.51057 -14.82479 -14.69946 -14.54541 -14.44476 -14.29445 -14.19125 -13.91937 -13.90290 -13.79452 -13.44905 -13.24715 -12.92092 -12.88853 -12.75455 -12.60650 -12.52181 -12.40718 -12.21239 -12.13252 -11.89090 -11.83586 -11.62786 -11.44531 -11.30508 -11.29559 -10.78048 -10.64016 -10.57304 -9.82634 -9.72997 -9.58739 -8.19741 -6.33406 0.35290 0.49570 1.40890 1.41504 1.55121 1.62030 1.98264 2.41337 2.90945 2.93153 3.02799 3.13588 3.46053 3.58742 3.66557 3.85142 3.88148 3.99185 4.05726 4.10671 4.15312 4.28100 4.31276 4.38775 4.40412 4.40794 4.45458 4.55028 4.61590 4.63133 4.72386 4.74429 4.77072 4.81484 4.91454 5.04573 5.09830 5.15294 5.15629 5.20417 5.44719 5.45838 5.52580 5.55894 5.59003 5.61697 5.69099 5.82619 5.88198 6.11580 6.15682 6.29795 6.66956 6.84359 7.21101 7.37029 8.92901 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.007308 B = 0.004273 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3830.728367 B = 6550.972027 C = 9431.655147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.078 3.922 3 H 0.112 0.888 4 O -0.387 6.387 5 C 0.050 3.950 6 C -0.196 4.196 7 C 0.107 3.893 8 O -0.541 6.541 9 C 0.091 3.909 10 N -0.599 5.599 11 C 0.150 3.850 12 C -0.113 4.113 13 C -0.126 4.126 14 C -0.137 4.137 15 C -0.122 4.122 16 C -0.124 4.124 17 C -0.104 4.104 18 C 0.517 3.483 19 O -0.576 6.576 20 C -0.125 4.125 21 C 0.048 3.952 22 C -0.541 4.541 23 H 0.072 0.928 24 C -0.002 4.002 25 N -0.936 5.936 26 Si 0.969 3.031 27 H -0.254 1.254 28 H -0.280 1.280 29 H -0.279 1.279 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.385 0.615 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.120 0.880 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.124 0.876 44 H 0.143 0.857 45 H 0.151 0.849 46 H 0.148 0.852 47 H 0.093 0.907 48 H 0.105 0.895 49 H -0.015 1.015 50 H -0.021 1.021 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.300 6.808 5.185 25.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.020 3.980 3 H 0.129 0.871 4 O -0.307 6.307 5 C -0.026 4.026 6 C -0.234 4.234 7 C 0.064 3.936 8 O -0.349 6.349 9 C -0.031 4.031 10 N -0.330 5.330 11 C 0.028 3.972 12 C -0.114 4.114 13 C -0.145 4.145 14 C -0.155 4.155 15 C -0.140 4.140 16 C -0.142 4.142 17 C -0.122 4.122 18 C 0.308 3.692 19 O -0.454 6.454 20 C -0.164 4.164 21 C 0.010 3.990 22 C -0.578 4.578 23 H 0.090 0.910 24 C -0.200 4.200 25 N -0.576 5.576 26 Si 0.793 3.207 27 H -0.178 1.178 28 H -0.206 1.206 29 H -0.205 1.205 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.236 0.764 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.138 0.862 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.142 0.858 44 H 0.161 0.839 45 H 0.168 0.832 46 H 0.166 0.834 47 H 0.111 0.889 48 H 0.122 0.878 49 H 0.004 0.996 50 H -0.003 1.003 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.134 6.890 5.123 25.615 hybrid contribution 1.750 -0.874 0.153 1.962 sum -22.384 6.016 5.276 23.771 Atomic orbital electron populations 1.21871 0.93369 1.02598 1.02400 1.22914 0.95961 0.96648 0.82457 0.87062 1.88946 1.86379 1.21647 1.33694 1.23593 1.00391 0.83957 0.94703 1.24163 1.01733 0.99338 0.98139 1.22734 0.86394 0.93435 0.91034 1.86525 1.36666 1.52752 1.58980 1.22382 0.95635 0.93625 0.91507 1.47921 1.13942 1.53658 1.17527 1.20516 0.99530 0.95243 0.81866 1.20288 0.95586 0.98193 0.97348 1.21214 0.97545 0.98931 0.96840 1.21357 1.00153 0.94865 0.99120 1.21482 0.94325 0.98409 0.99767 1.21520 0.98153 0.98933 0.95557 1.21325 0.98933 0.93169 0.98773 1.21190 0.81340 0.79388 0.87312 1.90648 1.67045 1.36297 1.51457 1.21878 0.97044 1.02151 0.95350 1.18638 0.90513 0.94594 0.95225 1.21688 0.96798 1.32615 1.06749 0.90977 1.26059 0.98726 0.95098 1.00105 1.70170 1.11252 1.38639 1.37502 0.85349 0.78423 0.78212 0.78764 1.17757 1.20592 1.20500 0.90157 0.92317 0.92666 0.90690 0.88823 0.90480 0.89079 0.76434 0.87263 0.88830 0.86200 0.90996 0.88721 0.85751 0.83924 0.83160 0.83444 0.88866 0.87772 0.99622 1.00286 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.56 71.98 0.62 -1.66 16 2 C 0.08 1.45 3.74 30.97 0.12 1.57 16 3 H 0.11 1.83 7.66 -2.38 -0.02 1.81 16 4 O -0.39 -9.31 11.19 -148.98 -1.67 -10.97 16 5 C 0.05 1.06 7.67 72.75 0.56 1.61 16 6 C -0.20 -4.31 5.69 31.98 0.18 -4.13 16 7 C 0.11 1.90 1.19 -9.80 -0.01 1.89 16 8 O -0.54 -7.69 10.47 -148.98 -1.56 -9.25 16 9 C 0.09 1.80 4.63 86.38 0.40 2.20 16 10 N -0.60 -15.45 2.12 -826.18 -1.75 -17.20 16 11 C 0.15 3.38 5.50 85.63 0.47 3.85 16 12 C -0.11 -2.66 5.45 -19.87 -0.11 -2.77 16 13 C -0.13 -3.60 9.70 22.27 0.22 -3.38 16 14 C -0.14 -3.32 10.05 22.27 0.22 -3.10 16 15 C -0.12 -2.32 10.05 22.27 0.22 -2.09 16 16 C -0.12 -2.06 10.05 22.27 0.22 -1.84 16 17 C -0.10 -1.85 9.31 22.27 0.21 -1.64 16 18 C 0.52 19.49 6.63 87.66 0.58 20.07 16 19 O -0.58 -27.16 15.46 -3.04 -0.05 -27.20 16 20 C -0.13 -5.09 3.89 29.85 0.12 -4.98 16 21 C 0.05 2.67 4.28 29.85 0.13 2.80 16 22 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 23 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 24 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 25 N -0.94 -59.32 13.29 21.45 0.28 -59.04 16 26 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 27 H -0.25 -10.88 7.11 99.48 0.71 -10.17 16 28 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 29 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 30 H 0.08 1.10 7.85 -2.38 -0.02 1.08 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.93 7.88 -2.39 -0.02 0.91 16 33 H 0.07 1.35 8.11 -2.39 -0.02 1.33 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 2.16 3.64 -2.39 -0.01 2.16 16 36 H 0.09 1.84 7.74 -2.39 -0.02 1.82 16 37 H 0.39 4.17 7.19 -74.05 -0.53 3.64 16 38 H 0.11 1.68 7.59 -2.38 -0.02 1.66 16 39 H 0.09 2.02 5.99 -2.39 -0.01 2.00 16 40 H 0.12 1.77 5.79 -2.39 -0.01 1.75 16 41 H 0.07 1.99 7.13 -2.39 -0.02 1.97 16 42 H 0.09 3.21 8.06 -2.91 -0.02 3.19 16 43 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 44 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 45 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 46 H 0.15 1.83 7.92 -2.91 -0.02 1.80 16 47 H 0.09 3.49 7.41 -2.39 -0.02 3.47 16 48 H 0.10 3.87 5.25 -2.39 -0.01 3.85 16 49 H -0.01 -0.92 8.03 -2.39 -0.02 -0.94 16 50 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 51 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -77.69 402.23 2.53 -75.17 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.40 Total: 23.83 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 4.84 Total: -21.96 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -1.47 Total: -76.23 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -3.27 Total: -47.43 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -77.69 2.53 -75.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360470828.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.597 kcal (2) G-P(sol) polarization free energy of solvation -77.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds