Wall clock time and date at job start Wed Apr 1 2020 04:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.99337 * 2 1 4 4 O 1.44052 * 109.92722 * 238.74986 * 2 1 3 5 5 C 1.44375 * 106.98159 * 214.02611 * 4 2 1 6 6 C 1.54992 * 103.49060 * 40.13780 * 5 4 2 7 7 C 1.54100 * 109.87713 * 121.08240 * 2 1 3 8 8 O 1.42897 * 110.48720 * 240.26048 * 7 2 1 9 9 C 1.53005 * 110.48781 * 2.77711 * 7 2 1 10 10 N 1.46497 * 109.46961 * 178.15324 * 9 7 2 11 11 C 1.46496 * 120.00352 * 270.00003 * 10 9 7 12 12 C 1.50697 * 109.47335 * 270.00449 * 11 10 9 13 13 C 1.38241 * 119.99909 * 269.72540 * 12 11 10 14 14 C 1.38238 * 119.99900 * 179.80742 * 13 12 11 15 15 C 1.38228 * 120.00071 * 0.39745 * 14 13 12 16 16 C 1.38235 * 120.00250 * 359.85526 * 15 14 13 17 17 C 1.38233 * 120.00583 * 89.99389 * 12 11 10 18 18 C 1.34775 * 120.00006 * 89.99997 * 10 9 7 19 19 O 1.21279 * 120.00300 * 179.97438 * 18 10 9 20 20 C 1.50703 * 119.99773 * 0.02562 * 18 10 9 21 21 C 1.53006 * 109.47126 * 179.97438 * 20 18 10 22 22 C 1.50698 * 109.47184 * 179.97438 * 21 20 18 23 23 H 1.08005 * 119.99819 * 0.02562 * 22 21 20 24 24 C 1.37875 * 120.00046 * 179.97438 * 22 21 20 25 25 N 1.31511 * 120.00192 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99979 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 180.02562 * 26 24 22 28 28 H 1.48503 * 109.47261 * 60.00310 * 26 24 22 29 29 H 1.48500 * 109.47454 * 300.00304 * 26 24 22 30 30 H 1.09001 * 109.47210 * 298.91982 * 1 2 3 31 31 H 1.09008 * 109.47026 * 58.91509 * 1 2 3 32 32 H 1.08994 * 109.47521 * 178.91372 * 1 2 3 33 33 H 1.09003 * 110.62137 * 281.63894 * 5 4 2 34 34 H 1.08996 * 110.62020 * 158.63998 * 5 4 2 35 35 H 1.09003 * 110.90679 * 204.78067 * 6 5 4 36 36 H 1.08997 * 110.93735 * 81.19051 * 6 5 4 37 37 H 0.96703 * 113.99493 * 181.84359 * 8 7 2 38 38 H 1.09000 * 109.46892 * 58.15635 * 9 7 2 39 39 H 1.08994 * 109.46749 * 298.15566 * 9 7 2 40 40 H 1.09002 * 109.47248 * 30.00186 * 11 10 9 41 41 H 1.09000 * 109.47481 * 150.00438 * 11 10 9 42 42 H 1.07997 * 119.99974 * 359.97438 * 13 12 11 43 43 H 1.08000 * 119.99894 * 180.23096 * 14 13 12 44 44 H 1.07999 * 120.00136 * 179.83048 * 15 14 13 45 45 H 1.08000 * 120.00523 * 179.97438 * 16 15 14 46 46 H 1.08009 * 119.99680 * 359.97438 * 17 12 11 47 47 H 1.09001 * 109.46980 * 59.99839 * 20 18 10 48 48 H 1.09001 * 109.47354 * 299.99360 * 20 18 10 49 49 H 1.09001 * 109.47002 * 60.00244 * 21 20 18 50 50 H 1.08993 * 109.46955 * 299.99807 * 21 20 18 51 51 H 0.97001 * 119.99934 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0209 -0.7026 -1.1578 5 6 3.2405 -1.3664 -0.7624 6 6 2.9215 -1.8914 0.6606 7 6 2.0539 -0.7482 1.2411 8 8 2.8484 0.1210 2.0506 9 6 0.8897 -1.3189 2.0535 10 7 1.4137 -2.0619 3.2022 11 6 1.7071 -3.4918 3.0778 12 6 0.4814 -4.2895 3.4413 13 6 0.2780 -4.6867 4.7497 14 6 -0.8484 -5.4151 5.0838 15 6 -1.7672 -5.7534 4.1082 16 6 -1.5613 -5.3608 2.7988 17 6 -0.4369 -4.6290 2.4654 18 6 1.6260 -1.4299 4.3735 19 8 2.0594 -2.0450 5.3246 20 6 1.3237 0.0409 4.5016 21 6 1.6501 0.5069 5.9220 22 6 1.3484 1.9778 6.0499 23 1 0.9620 2.5255 5.2030 24 6 1.5646 2.6242 7.2484 25 7 2.0346 1.9572 8.2798 26 14 1.1900 4.4473 7.4072 27 1 1.5069 4.8996 8.7858 28 1 -0.2492 4.6832 7.1270 29 1 2.0148 5.2087 6.4351 30 1 -0.3634 0.4970 0.8995 31 1 -0.3633 0.5306 -0.8802 32 1 -0.3634 -1.0274 -0.0195 33 1 4.0702 -0.6601 -0.7338 34 1 3.4628 -2.1940 -1.4360 35 1 3.8347 -2.0201 1.2416 36 1 2.3574 -2.8229 0.6147 37 1 3.2273 -0.3059 2.8312 38 1 0.3021 -1.9884 1.4252 39 1 0.2582 -0.5034 2.4056 40 1 1.9948 -3.7157 2.0506 41 1 2.5242 -3.7549 3.7496 42 1 0.9978 -4.4255 5.5113 43 1 -1.0091 -5.7221 6.1067 44 1 -2.6459 -6.3248 4.3687 45 1 -2.2790 -5.6255 2.0364 46 1 -0.2761 -4.3221 1.4424 47 1 0.2672 0.2139 4.2967 48 1 1.9286 0.5998 3.7876 49 1 2.7065 0.3339 6.1273 50 1 1.0449 -0.0519 6.6357 51 1 2.2289 1.0104 8.1975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360470830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:12 Heat of formation + Delta-G solvation = -106.736887 kcal Electronic energy + Delta-G solvation = -32409.521135 eV Core-core repulsion = 28273.753145 eV Total energy + Delta-G solvation = -4135.767990 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.98185 -39.60048 -38.79671 -36.61656 -35.24455 -33.79527 -32.69379 -31.79802 -31.35721 -30.96952 -30.49798 -27.41400 -26.47420 -25.08202 -24.51045 -22.80901 -22.57807 -22.06391 -21.09618 -20.37593 -18.63105 -17.52380 -17.21545 -16.99555 -16.64446 -16.22003 -16.05994 -15.81359 -15.56191 -15.33294 -14.97770 -14.59578 -13.94438 -13.79896 -13.68628 -13.53939 -13.48997 -13.42005 -13.09295 -12.73249 -12.63011 -12.56439 -12.39902 -12.15622 -11.89874 -11.79544 -11.69416 -11.53296 -11.43340 -11.30356 -11.10486 -10.87640 -10.74762 -10.39237 -10.11498 -10.00369 -9.94409 -9.78375 -9.46440 -8.99872 -8.85254 -8.59567 -8.51177 -8.26784 -6.30271 -4.00078 1.18865 1.32868 2.95659 3.02882 3.46700 3.48995 3.55761 3.67608 3.75122 3.82363 4.20654 4.37081 4.50486 4.59529 4.69224 4.71558 4.78620 4.85125 4.91116 4.93580 5.05882 5.11659 5.16251 5.27936 5.32748 5.33856 5.37538 5.39905 5.47234 5.48394 5.52411 5.61455 5.65015 5.70218 5.80776 5.89886 5.95168 5.97890 6.08521 6.20278 6.34503 6.44551 6.48944 6.55291 6.56626 6.75656 6.91736 7.43419 7.48066 7.50828 7.56487 8.20806 8.49057 8.53953 8.93530 9.73013 11.10541 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.007632 B = 0.004143 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3667.984847 B = 6757.295400 C = 9355.210402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.089 3.911 3 H 0.087 0.913 4 O -0.372 6.372 5 C 0.050 3.950 6 C -0.182 4.182 7 C 0.086 3.914 8 O -0.541 6.541 9 C 0.091 3.909 10 N -0.620 5.620 11 C 0.147 3.853 12 C -0.103 4.103 13 C -0.093 4.093 14 C -0.122 4.122 15 C -0.120 4.120 16 C -0.126 4.126 17 C -0.110 4.110 18 C 0.507 3.493 19 O -0.527 6.527 20 C -0.136 4.136 21 C 0.027 3.973 22 C -0.605 4.605 23 H 0.049 0.951 24 C 0.016 3.984 25 N -0.911 5.911 26 Si 1.068 2.932 27 H -0.283 1.283 28 H -0.289 1.289 29 H -0.288 1.288 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.383 0.617 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.078 0.922 48 H 0.103 0.897 49 H 0.013 0.987 50 H 0.011 0.989 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.484 -14.056 -19.046 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.031 3.969 3 H 0.105 0.895 4 O -0.291 6.291 5 C -0.026 4.026 6 C -0.219 4.219 7 C 0.044 3.956 8 O -0.349 6.349 9 C -0.033 4.033 10 N -0.355 5.355 11 C 0.025 3.975 12 C -0.105 4.105 13 C -0.112 4.112 14 C -0.140 4.140 15 C -0.138 4.138 16 C -0.144 4.144 17 C -0.129 4.129 18 C 0.298 3.702 19 O -0.402 6.402 20 C -0.176 4.176 21 C -0.010 4.010 22 C -0.643 4.643 23 H 0.067 0.933 24 C -0.188 4.188 25 N -0.547 5.547 26 Si 0.897 3.103 27 H -0.208 1.208 28 H -0.215 1.215 29 H -0.214 1.214 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.147 0.853 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.096 0.904 48 H 0.121 0.879 49 H 0.031 0.969 50 H 0.029 0.971 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.462 -12.672 -18.094 22.359 hybrid contribution 0.095 -1.815 -0.520 1.890 sum -3.367 -14.486 -18.614 23.826 Atomic orbital electron populations 1.22068 0.92915 1.03054 1.03396 1.22624 0.95093 0.96561 0.82608 0.89540 1.88952 1.39638 1.67781 1.32739 1.23483 0.87965 0.96480 0.94689 1.23912 1.01222 0.99067 0.97727 1.23000 0.91226 0.89750 0.91663 1.86584 1.68449 1.39281 1.40619 1.22418 0.95486 0.97423 0.87977 1.48255 1.67046 1.08232 1.11930 1.20455 0.94916 0.80005 1.02132 1.20253 0.97550 0.98706 0.93970 1.21293 0.97668 0.96075 0.96119 1.21212 0.94579 0.98763 0.99448 1.21157 0.99152 1.00157 0.93314 1.21083 0.97690 0.99172 0.96480 1.21000 0.94440 0.98707 0.98754 1.21775 0.76204 0.91196 0.81046 1.90646 1.43926 1.68373 1.37229 1.22075 1.02645 0.88677 1.04159 1.18995 0.96725 0.96247 0.89055 1.22007 1.48268 0.94237 0.99813 0.93278 1.25810 0.94328 1.06327 0.92360 1.70743 1.40883 1.11231 1.31885 0.83563 0.76208 0.74507 0.76068 1.20817 1.21514 1.21431 0.90232 0.91291 0.91559 0.91726 0.88906 0.89510 0.89650 0.76680 0.89245 0.88396 0.89897 0.89046 0.85284 0.86084 0.86295 0.86253 0.86482 0.90401 0.87945 0.96860 0.97065 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 8.41 37.16 0.31 -1.09 16 2 C 0.09 0.96 3.89 -26.16 -0.10 0.86 16 3 H 0.09 1.03 7.97 -51.93 -0.41 0.62 16 4 O -0.37 -4.11 11.20 -35.23 -0.39 -4.51 16 5 C 0.05 0.45 7.72 38.21 0.29 0.75 16 6 C -0.18 -1.63 5.48 -24.72 -0.14 -1.76 16 7 C 0.09 0.94 1.17 -89.09 -0.10 0.83 16 8 O -0.54 -7.37 10.81 -35.23 -0.38 -7.75 16 9 C 0.09 0.99 3.34 -4.04 -0.01 0.98 16 10 N -0.62 -8.10 2.17 -175.07 -0.38 -8.48 16 11 C 0.15 1.70 5.16 -5.20 -0.03 1.67 16 12 C -0.10 -1.26 5.46 -104.62 -0.57 -1.83 16 13 C -0.09 -1.26 9.70 -39.58 -0.38 -1.65 16 14 C -0.12 -1.47 10.05 -39.58 -0.40 -1.86 16 15 C -0.12 -1.26 10.05 -39.59 -0.40 -1.65 16 16 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 17 C -0.11 -1.14 9.70 -39.58 -0.38 -1.53 16 18 C 0.51 9.07 6.48 -10.98 -0.07 9.00 16 19 O -0.53 -11.26 15.11 5.56 0.08 -11.18 16 20 C -0.14 -2.72 4.02 -27.88 -0.11 -2.83 16 21 C 0.03 0.72 3.57 -27.88 -0.10 0.62 16 22 C -0.60 -17.28 9.11 -34.44 -0.31 -17.60 16 23 H 0.05 1.35 7.74 -52.48 -0.41 0.95 16 24 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 25 N -0.91 -28.69 13.65 55.43 0.76 -27.93 16 26 Si 1.07 25.57 29.90 -169.99 -5.08 20.48 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 30 H 0.08 0.71 6.88 -51.93 -0.36 0.35 16 31 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 32 H 0.07 0.53 6.66 -51.93 -0.35 0.18 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.09 0.67 5.80 -51.93 -0.30 0.36 16 37 H 0.38 5.29 6.62 45.56 0.30 5.59 16 38 H 0.09 0.81 6.65 -51.93 -0.35 0.46 16 39 H 0.10 1.16 5.13 -51.93 -0.27 0.89 16 40 H 0.08 0.73 5.38 -51.93 -0.28 0.45 16 41 H 0.09 1.18 7.36 -51.93 -0.38 0.80 16 42 H 0.13 1.96 7.61 -52.49 -0.40 1.56 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 47 H 0.08 1.51 7.40 -51.93 -0.38 1.12 16 48 H 0.10 1.93 5.00 -51.93 -0.26 1.67 16 49 H 0.01 0.37 7.97 -51.93 -0.41 -0.04 16 50 H 0.01 0.32 7.96 -51.93 -0.41 -0.09 16 51 H 0.27 8.65 7.22 -40.82 -0.29 8.35 16 LS Contribution 397.07 15.07 5.98 5.98 Total: -1.00 -34.34 397.07 -9.55 -43.89 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.14 Total: 7.87 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -3.00 Total: -18.39 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.38 Total: -36.41 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.69 Total: -23.43 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.48 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.34 -9.55 -43.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360470830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.845 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds