Wall clock time and date at job start Wed Apr 1 2020 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00431 * 2 1 4 4 C 1.53001 * 109.47531 * 179.97438 * 3 2 1 5 5 C 1.52990 * 109.47523 * 185.04087 * 4 3 2 6 6 H 1.09007 * 109.67938 * 59.97277 * 5 4 3 7 7 C 1.53304 * 109.68117 * 299.42022 * 5 4 3 8 8 O 1.42967 * 109.22161 * 187.97012 * 7 5 4 9 9 C 1.42970 * 114.16247 * 62.58315 * 8 7 5 10 10 C 1.53714 * 109.14589 * 297.28637 * 9 8 7 11 11 N 1.47147 * 108.16395 * 52.53963 * 10 9 8 12 12 C 1.34771 * 120.98327 * 129.42989 * 11 10 9 13 13 O 1.21280 * 120.00323 * 185.24092 * 12 11 10 14 14 C 1.50702 * 119.99998 * 5.24411 * 12 11 10 15 15 C 1.53001 * 109.47282 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47107 * 54.99671 * 15 14 12 17 17 C 1.50700 * 109.46951 * 294.99611 * 15 14 12 18 18 H 1.07999 * 119.99915 * 334.94635 * 17 15 14 19 19 C 1.37879 * 119.99923 * 154.94965 * 17 15 14 20 20 N 1.31512 * 119.99848 * 184.97292 * 19 17 15 21 21 Si 1.86793 * 119.99939 * 4.96938 * 19 17 15 22 22 H 1.48504 * 109.46948 * 84.93697 * 21 19 17 23 23 H 1.48506 * 109.47175 * 204.93112 * 21 19 17 24 24 H 1.48495 * 109.47810 * 324.93385 * 21 19 17 25 25 C 1.50699 * 109.47038 * 174.99772 * 15 14 12 26 26 C 1.38234 * 120.00173 * 235.09817 * 25 15 14 27 27 C 1.38233 * 120.00313 * 180.25403 * 26 25 15 28 28 C 1.38238 * 119.99693 * 359.51643 * 27 26 25 29 29 C 1.38224 * 120.00070 * 0.46456 * 28 27 26 30 30 C 1.38232 * 120.00261 * 55.07939 * 25 15 14 31 31 H 1.09001 * 109.46719 * 299.99735 * 1 2 3 32 32 H 1.09000 * 109.46944 * 59.99645 * 1 2 3 33 33 H 1.08997 * 109.47352 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.46815 * 60.00475 * 3 2 1 35 35 H 1.08996 * 109.47330 * 300.00341 * 3 2 1 36 36 H 1.09001 * 109.46714 * 65.03671 * 4 3 2 37 37 H 1.09001 * 109.46861 * 305.04648 * 4 3 2 38 38 H 1.08994 * 109.51013 * 307.89515 * 7 5 4 39 39 H 1.09000 * 109.51104 * 68.04913 * 7 5 4 40 40 H 1.08994 * 109.51123 * 57.34239 * 9 8 7 41 41 H 1.08997 * 109.50972 * 177.49171 * 9 8 7 42 42 H 1.09001 * 109.83364 * 292.85780 * 10 9 8 43 43 H 1.09006 * 109.74483 * 172.16743 * 10 9 8 44 44 H 1.08994 * 109.47574 * 59.99873 * 14 12 11 45 45 H 1.09003 * 109.46844 * 299.99668 * 14 12 11 46 46 H 0.97000 * 120.00317 * 179.97438 * 20 19 17 47 47 H 1.08000 * 119.99866 * 359.97438 * 26 25 15 48 48 H 1.08001 * 120.00406 * 179.72411 * 27 26 25 49 49 H 1.08002 * 119.99746 * 180.25305 * 28 27 26 50 50 H 1.08000 * 120.00112 * 179.78796 * 29 28 27 51 51 H 1.08005 * 119.99716 * 0.02562 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1574 2.5766 0.1274 6 1 3.8309 3.0412 1.0578 7 6 3.7287 3.4438 -1.0619 8 8 4.4576 4.6734 -1.0347 9 6 5.8720 4.5185 -1.1748 10 6 6.4104 3.7068 0.0143 11 7 5.6248 2.4668 0.1166 12 6 6.2313 1.2664 0.2035 13 8 5.5694 0.2503 0.1912 14 6 7.7320 1.1868 0.3159 15 6 8.1602 -0.2797 0.3985 16 1 7.7589 -0.8241 -0.4562 17 6 7.6322 -0.8861 1.6732 18 1 7.4181 -0.2551 2.5231 19 6 7.4227 -2.2464 1.7543 20 7 6.8709 -2.7637 2.8302 21 14 7.9225 -3.3546 0.3361 22 1 9.3582 -3.7103 0.4681 23 1 7.1017 -4.5920 0.3617 24 1 7.7049 -2.6429 -0.9489 25 6 9.6647 -0.3652 0.3872 26 6 10.3056 -1.1453 -0.5570 27 6 11.6854 -1.2279 -0.5642 28 6 12.4249 -0.5223 0.3666 29 6 11.7841 0.2582 1.3105 30 6 10.4040 0.3369 1.3206 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6887 1.8463 0.8901 35 1 1.6887 1.8463 -0.8899 36 1 3.8638 0.7233 -0.9308 37 1 3.8508 0.5677 0.8422 38 1 3.9395 2.9161 -1.9919 39 1 2.6609 3.6520 -0.9944 40 1 6.0904 3.9947 -2.1053 41 1 6.3460 5.4999 -1.1886 42 1 6.3069 4.2839 0.9332 43 1 7.4601 3.4638 -0.1509 44 1 8.0575 1.7118 1.2139 45 1 8.1870 1.6489 -0.5602 46 1 6.7231 -3.7207 2.8872 47 1 9.7281 -1.6940 -1.2862 48 1 12.1860 -1.8409 -1.2990 49 1 13.5031 -0.5835 0.3585 50 1 12.3616 0.8067 2.0398 51 1 9.9032 0.9464 2.0584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360937696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:54 Heat of formation + Delta-G solvation = -78.241092 kcal Electronic energy + Delta-G solvation = -31997.836079 eV Core-core repulsion = 27863.303759 eV Total energy + Delta-G solvation = -4134.532319 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.41861 -38.76318 -37.92047 -37.74992 -34.79796 -34.18989 -33.42413 -31.63189 -30.26806 -29.53761 -29.04679 -27.42686 -26.08869 -25.93912 -24.21520 -22.73743 -22.22098 -21.87898 -21.30987 -19.70060 -18.50700 -16.99603 -16.88565 -16.70858 -16.25792 -16.01183 -15.81314 -15.57798 -15.27497 -14.96379 -14.78564 -14.66942 -14.33503 -14.20137 -13.90320 -13.33911 -13.19818 -12.93313 -12.80677 -12.56878 -12.49531 -12.29152 -12.04023 -11.93647 -11.81124 -11.55777 -11.40165 -11.17265 -11.05088 -10.87321 -10.73184 -10.70343 -10.59376 -10.36423 -10.18772 -9.86176 -9.58300 -9.55915 -9.15716 -8.57692 -8.35704 -8.23620 -8.15532 -7.81629 -5.97897 -3.94163 2.05209 2.11762 3.10266 3.34102 3.41643 3.44678 3.47007 3.64580 3.92691 4.48773 4.55213 4.64222 4.84941 4.90621 5.03031 5.08796 5.18483 5.22421 5.25921 5.32330 5.36648 5.41467 5.44592 5.47948 5.48882 5.51415 5.58522 5.63181 5.65652 5.68635 5.70695 5.81360 5.88137 5.95629 6.01836 6.18849 6.29327 6.45144 6.47768 6.58434 6.67991 6.78872 6.90707 6.99913 7.03190 7.11090 7.22452 7.31471 7.57049 7.68947 7.79728 7.80239 8.52643 8.90616 9.01116 9.65162 11.15148 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010198 B = 0.003965 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.044766 B = 7060.805045 C = 9133.557965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.055 3.945 4 C -0.111 4.111 5 C 0.123 3.877 6 H 0.075 0.925 7 C 0.048 3.952 8 O -0.382 6.382 9 C 0.046 3.954 10 C 0.077 3.923 11 N -0.630 5.630 12 C 0.517 3.483 13 O -0.481 6.481 14 C -0.114 4.114 15 C 0.049 3.951 16 H 0.054 0.946 17 C -0.482 4.482 18 H 0.071 0.929 19 C 0.084 3.916 20 N -0.896 5.896 21 Si 0.868 3.132 22 H -0.273 1.273 23 H -0.293 1.293 24 H -0.263 1.263 25 C -0.038 4.038 26 C -0.142 4.142 27 C -0.122 4.122 28 C -0.151 4.151 29 C -0.124 4.124 30 C -0.108 4.108 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.057 0.943 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.262 0.738 47 H 0.109 0.891 48 H 0.109 0.891 49 H 0.108 0.892 50 H 0.111 0.889 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.549 14.409 -8.191 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.022 4.022 4 C -0.148 4.148 5 C 0.019 3.981 6 H 0.093 0.907 7 C -0.029 4.029 8 O -0.301 6.301 9 C -0.031 4.031 10 C -0.046 4.046 11 N -0.369 5.369 12 C 0.306 3.694 13 O -0.352 6.352 14 C -0.154 4.154 15 C 0.030 3.970 16 H 0.072 0.928 17 C -0.519 4.519 18 H 0.089 0.911 19 C -0.118 4.118 20 N -0.533 5.533 21 Si 0.697 3.303 22 H -0.199 1.199 23 H -0.220 1.220 24 H -0.188 1.188 25 C -0.039 4.039 26 C -0.160 4.160 27 C -0.140 4.140 28 C -0.169 4.169 29 C -0.142 4.142 30 C -0.126 4.126 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.074 0.926 41 H 0.121 0.879 42 H 0.091 0.909 43 H 0.115 0.885 44 H 0.103 0.897 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.126 0.874 50 H 0.129 0.871 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.946 13.627 -8.076 16.112 hybrid contribution 0.219 -0.727 -0.541 0.932 sum -2.728 12.900 -8.617 15.751 Atomic orbital electron populations 1.22720 0.81710 1.02605 0.99480 1.87987 1.19003 1.27803 1.95236 1.22761 0.95687 0.84632 0.99135 1.22067 0.90283 0.95086 1.07392 1.21699 0.81078 0.96819 0.98481 0.90734 1.23187 0.96557 0.85452 0.97717 1.87928 1.18190 1.29718 1.94233 1.23076 0.81848 1.00944 0.97247 1.22418 0.96902 0.86193 0.99136 1.48321 1.05224 1.06555 1.76789 1.20866 0.91055 0.81952 0.75577 1.90800 1.64723 1.34145 1.45577 1.21671 0.91049 1.01017 1.01634 1.18273 0.86851 0.91543 1.00371 0.92768 1.20571 1.41538 0.92838 0.96956 0.91090 1.24855 0.93794 0.98007 0.95173 1.69877 1.42838 1.12355 1.28252 0.87058 0.78651 0.80456 0.84169 1.19910 1.21959 1.18809 1.20781 0.98167 0.92960 0.91965 1.21090 0.94262 1.00881 0.99799 1.20968 0.94179 0.99692 0.99139 1.20855 0.98781 0.99895 0.97363 1.21044 0.94914 0.99693 0.98567 1.20926 0.92980 1.00279 0.98416 0.94302 0.94493 0.89770 0.93715 0.94124 0.90071 0.86854 0.92504 0.88187 0.92618 0.87910 0.90912 0.88472 0.89734 0.91409 0.92807 0.87263 0.87319 0.87351 0.87134 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -6.11 10.70 -35.23 -0.38 -6.49 16 3 C 0.06 0.75 5.47 37.16 0.20 0.95 16 4 C -0.11 -1.81 3.54 -26.74 -0.09 -1.91 16 5 C 0.12 1.71 3.20 -67.42 -0.22 1.49 16 6 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 7 C 0.05 0.56 5.71 37.31 0.21 0.77 16 8 O -0.38 -4.49 10.74 -35.23 -0.38 -4.87 16 9 C 0.05 0.45 7.00 37.53 0.26 0.71 16 10 C 0.08 0.85 6.55 -3.32 -0.02 0.83 16 11 N -0.63 -9.41 3.01 -164.49 -0.50 -9.90 16 12 C 0.52 9.81 7.37 -10.99 -0.08 9.73 16 13 O -0.48 -11.21 10.54 5.56 0.06 -11.16 16 14 C -0.11 -2.05 3.29 -27.88 -0.09 -2.14 16 15 C 0.05 1.10 1.24 -92.92 -0.12 0.99 16 16 H 0.05 1.33 5.28 -51.93 -0.27 1.05 16 17 C -0.48 -13.14 7.20 -34.44 -0.25 -13.39 16 18 H 0.07 2.11 8.05 -52.49 -0.42 1.68 16 19 C 0.08 2.47 5.47 -17.82 -0.10 2.38 16 20 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 21 Si 0.87 22.64 24.71 -169.99 -4.20 18.44 16 22 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 24 H -0.26 -6.56 5.89 56.52 0.33 -6.22 16 25 C -0.04 -0.79 4.30 -104.63 -0.45 -1.24 16 26 C -0.14 -2.84 8.12 -39.58 -0.32 -3.16 16 27 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 16 28 C -0.15 -2.44 10.05 -39.59 -0.40 -2.84 16 29 C -0.12 -2.06 10.05 -39.59 -0.40 -2.46 16 30 C -0.11 -2.03 8.94 -39.58 -0.35 -2.39 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.04 0.46 6.93 -51.93 -0.36 0.10 16 36 H 0.08 1.47 7.25 -51.93 -0.38 1.10 16 37 H 0.11 2.36 6.31 -51.93 -0.33 2.04 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.95 7.04 -51.93 -0.37 0.59 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 0.95 6.07 -51.93 -0.32 0.64 16 44 H 0.08 1.43 7.32 -51.93 -0.38 1.05 16 45 H 0.07 1.02 7.44 -51.93 -0.39 0.64 16 46 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 47 H 0.11 2.18 6.67 -52.49 -0.35 1.83 16 48 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 49 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 50 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 51 H 0.12 2.13 7.36 -52.48 -0.39 1.74 16 LS Contribution 393.80 15.07 5.93 5.93 Total: -1.00 -34.55 393.80 -8.40 -42.95 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -8.22 Total: 5.12 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -1.49 Total: -12.73 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.28 Total: -37.19 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.70 Total: -22.51 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.20 Total: 18.44 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.55 -8.40 -42.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360937696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.293 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds