Wall clock time and date at job start Wed Apr 1 2020 05:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00431 * 2 1 4 4 C 1.53001 * 109.47531 * 179.97438 * 3 2 1 5 5 C 1.52990 * 109.47523 * 185.04087 * 4 3 2 6 6 H 1.09007 * 109.67938 * 59.97277 * 5 4 3 7 7 C 1.53304 * 109.68117 * 299.42022 * 5 4 3 8 8 O 1.42967 * 109.22161 * 187.97012 * 7 5 4 9 9 C 1.42970 * 114.16247 * 62.58315 * 8 7 5 10 10 C 1.53714 * 109.14589 * 297.28637 * 9 8 7 11 11 N 1.47147 * 108.16395 * 52.53963 * 10 9 8 12 12 C 1.34771 * 120.98327 * 129.42989 * 11 10 9 13 13 O 1.21280 * 120.00323 * 185.24092 * 12 11 10 14 14 C 1.50702 * 119.99998 * 5.24411 * 12 11 10 15 15 C 1.53001 * 109.47282 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47107 * 54.99671 * 15 14 12 17 17 C 1.50700 * 109.46951 * 294.99611 * 15 14 12 18 18 H 1.07999 * 119.99915 * 334.94635 * 17 15 14 19 19 C 1.37879 * 119.99923 * 154.94965 * 17 15 14 20 20 N 1.31512 * 119.99848 * 184.97292 * 19 17 15 21 21 Si 1.86793 * 119.99939 * 4.96938 * 19 17 15 22 22 H 1.48504 * 109.46948 * 84.93697 * 21 19 17 23 23 H 1.48506 * 109.47175 * 204.93112 * 21 19 17 24 24 H 1.48495 * 109.47810 * 324.93385 * 21 19 17 25 25 C 1.50699 * 109.47038 * 174.99772 * 15 14 12 26 26 C 1.38234 * 120.00173 * 235.09817 * 25 15 14 27 27 C 1.38233 * 120.00313 * 180.25403 * 26 25 15 28 28 C 1.38238 * 119.99693 * 359.51643 * 27 26 25 29 29 C 1.38224 * 120.00070 * 0.46456 * 28 27 26 30 30 C 1.38232 * 120.00261 * 55.07939 * 25 15 14 31 31 H 1.09001 * 109.46719 * 299.99735 * 1 2 3 32 32 H 1.09000 * 109.46944 * 59.99645 * 1 2 3 33 33 H 1.08997 * 109.47352 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.46815 * 60.00475 * 3 2 1 35 35 H 1.08996 * 109.47330 * 300.00341 * 3 2 1 36 36 H 1.09001 * 109.46714 * 65.03671 * 4 3 2 37 37 H 1.09001 * 109.46861 * 305.04648 * 4 3 2 38 38 H 1.08994 * 109.51013 * 307.89515 * 7 5 4 39 39 H 1.09000 * 109.51104 * 68.04913 * 7 5 4 40 40 H 1.08994 * 109.51123 * 57.34239 * 9 8 7 41 41 H 1.08997 * 109.50972 * 177.49171 * 9 8 7 42 42 H 1.09001 * 109.83364 * 292.85780 * 10 9 8 43 43 H 1.09006 * 109.74483 * 172.16743 * 10 9 8 44 44 H 1.08994 * 109.47574 * 59.99873 * 14 12 11 45 45 H 1.09003 * 109.46844 * 299.99668 * 14 12 11 46 46 H 0.97000 * 120.00317 * 179.97438 * 20 19 17 47 47 H 1.08000 * 119.99866 * 359.97438 * 26 25 15 48 48 H 1.08001 * 120.00406 * 179.72411 * 27 26 25 49 49 H 1.08002 * 119.99746 * 180.25305 * 28 27 26 50 50 H 1.08000 * 120.00112 * 179.78796 * 29 28 27 51 51 H 1.08005 * 119.99716 * 0.02562 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1574 2.5766 0.1274 6 1 3.8309 3.0412 1.0578 7 6 3.7287 3.4438 -1.0619 8 8 4.4576 4.6734 -1.0347 9 6 5.8720 4.5185 -1.1748 10 6 6.4104 3.7068 0.0143 11 7 5.6248 2.4668 0.1166 12 6 6.2313 1.2664 0.2035 13 8 5.5694 0.2503 0.1912 14 6 7.7320 1.1868 0.3159 15 6 8.1602 -0.2797 0.3985 16 1 7.7589 -0.8241 -0.4562 17 6 7.6322 -0.8861 1.6732 18 1 7.4181 -0.2551 2.5231 19 6 7.4227 -2.2464 1.7543 20 7 6.8709 -2.7637 2.8302 21 14 7.9225 -3.3546 0.3361 22 1 9.3582 -3.7103 0.4681 23 1 7.1017 -4.5920 0.3617 24 1 7.7049 -2.6429 -0.9489 25 6 9.6647 -0.3652 0.3872 26 6 10.3056 -1.1453 -0.5570 27 6 11.6854 -1.2279 -0.5642 28 6 12.4249 -0.5223 0.3666 29 6 11.7841 0.2582 1.3105 30 6 10.4040 0.3369 1.3206 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6887 1.8463 0.8901 35 1 1.6887 1.8463 -0.8899 36 1 3.8638 0.7233 -0.9308 37 1 3.8508 0.5677 0.8422 38 1 3.9395 2.9161 -1.9919 39 1 2.6609 3.6520 -0.9944 40 1 6.0904 3.9947 -2.1053 41 1 6.3460 5.4999 -1.1886 42 1 6.3069 4.2839 0.9332 43 1 7.4601 3.4638 -0.1509 44 1 8.0575 1.7118 1.2139 45 1 8.1870 1.6489 -0.5602 46 1 6.7231 -3.7207 2.8872 47 1 9.7281 -1.6940 -1.2862 48 1 12.1860 -1.8409 -1.2990 49 1 13.5031 -0.5835 0.3585 50 1 12.3616 0.8067 2.0398 51 1 9.9032 0.9464 2.0584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360937696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:53 Heat of formation + Delta-G solvation = -102.279736 kcal Electronic energy + Delta-G solvation = -31998.878473 eV Core-core repulsion = 27863.303759 eV Total energy + Delta-G solvation = -4135.574713 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.66231 -40.16482 -39.16041 -38.85459 -36.20089 -35.62962 -34.73076 -33.63154 -31.65706 -30.58970 -30.39675 -28.67374 -27.60668 -27.06158 -25.39066 -24.28528 -23.44273 -23.13456 -22.55006 -21.20984 -19.89288 -19.04303 -18.14181 -17.80517 -17.42457 -17.25613 -16.91564 -16.61914 -16.56383 -16.43876 -16.02087 -15.91698 -15.66854 -15.42391 -15.37048 -14.84038 -14.65657 -14.49501 -14.14510 -14.03385 -13.88144 -13.58113 -13.45001 -13.26142 -13.01197 -12.95868 -12.71045 -12.56792 -12.36586 -12.14127 -12.12561 -12.01525 -11.90947 -11.80328 -11.73167 -11.44876 -11.17453 -11.07607 -10.69597 -10.62191 -9.90221 -9.64473 -9.38476 -9.31117 -8.24277 -6.19860 0.64428 0.70706 1.27223 1.30883 1.35878 1.87017 1.94267 2.36100 2.72937 2.95381 3.05253 3.19112 3.63084 3.76827 3.94195 4.00384 4.06695 4.16297 4.17914 4.20567 4.26799 4.27730 4.30476 4.36461 4.40141 4.42121 4.47863 4.50995 4.51796 4.58286 4.62857 4.66855 4.79268 4.80377 4.82715 4.86529 4.92754 5.03970 5.16210 5.20342 5.31311 5.36535 5.37373 5.66824 5.69497 5.74323 5.79707 5.99298 6.09336 6.28679 6.30265 6.32356 6.50379 6.78518 7.41497 7.48085 8.93004 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010198 B = 0.003965 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.044766 B = 7060.805045 C = 9133.557965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.427 6.427 3 C 0.059 3.941 4 C -0.098 4.098 5 C 0.121 3.879 6 H 0.081 0.919 7 C 0.059 3.941 8 O -0.388 6.388 9 C 0.047 3.953 10 C 0.069 3.931 11 N -0.626 5.626 12 C 0.508 3.492 13 O -0.539 6.539 14 C -0.107 4.107 15 C 0.052 3.948 16 H 0.030 0.970 17 C -0.457 4.457 18 H 0.033 0.967 19 C 0.020 3.980 20 N -0.952 5.952 21 Si 0.920 3.080 22 H -0.260 1.260 23 H -0.303 1.303 24 H -0.252 1.252 25 C -0.062 4.062 26 C -0.163 4.163 27 C -0.124 4.124 28 C -0.141 4.141 29 C -0.120 4.120 30 C -0.121 4.121 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.125 0.875 40 H 0.057 0.943 41 H 0.137 0.863 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.258 0.742 47 H 0.100 0.900 48 H 0.137 0.863 49 H 0.148 0.852 50 H 0.144 0.856 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 17.434 -10.012 20.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.347 6.347 3 C -0.018 4.018 4 C -0.136 4.136 5 C 0.018 3.982 6 H 0.099 0.901 7 C -0.018 4.018 8 O -0.306 6.306 9 C -0.030 4.030 10 C -0.053 4.053 11 N -0.363 5.363 12 C 0.298 3.702 13 O -0.415 6.415 14 C -0.147 4.147 15 C 0.033 3.967 16 H 0.048 0.952 17 C -0.495 4.495 18 H 0.051 0.949 19 C -0.176 4.176 20 N -0.594 5.594 21 Si 0.747 3.253 22 H -0.185 1.185 23 H -0.231 1.231 24 H -0.177 1.177 25 C -0.062 4.062 26 C -0.181 4.181 27 C -0.142 4.142 28 C -0.158 4.158 29 C -0.137 4.137 30 C -0.139 4.139 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.143 0.857 40 H 0.075 0.925 41 H 0.155 0.845 42 H 0.103 0.897 43 H 0.130 0.870 44 H 0.114 0.886 45 H 0.122 0.878 46 H 0.067 0.933 47 H 0.118 0.882 48 H 0.155 0.845 49 H 0.166 0.834 50 H 0.162 0.838 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.821 16.735 -9.927 19.475 hybrid contribution -0.365 -1.513 0.043 1.557 sum -1.186 15.222 -9.883 18.188 Atomic orbital electron populations 1.22935 0.79363 1.03563 1.01197 1.87933 1.21771 1.29373 1.95604 1.22771 0.93378 0.84337 1.01316 1.21718 0.92808 0.95625 1.03445 1.21808 0.80354 0.95743 1.00320 0.90079 1.23117 0.97934 0.84933 0.95855 1.87933 1.19201 1.29373 1.94086 1.23260 0.80979 1.02455 0.96303 1.22777 0.97312 0.84528 1.00653 1.48333 1.06200 1.06738 1.75059 1.21111 0.91432 0.82535 0.75168 1.90815 1.65818 1.36448 1.48409 1.21586 0.90842 0.98505 1.03762 1.18088 0.88609 0.93614 0.96402 0.95198 1.20781 1.39249 0.91936 0.97496 0.94904 1.25592 0.94834 0.99873 0.97283 1.70032 1.46381 1.12260 1.30677 0.86219 0.78596 0.78321 0.82129 1.18531 1.23092 1.17655 1.20491 0.96550 0.95164 0.94021 1.21183 0.95793 1.01153 0.99984 1.21328 0.93090 0.99815 0.99972 1.21345 1.00775 0.97942 0.95774 1.21431 0.93956 0.99322 0.99034 1.21036 0.94354 1.00466 0.98013 0.92985 0.92229 0.89382 0.92173 0.90894 0.92819 0.92444 0.92842 0.85690 0.92490 0.84531 0.89718 0.87022 0.88620 0.87772 0.93348 0.88165 0.84487 0.83439 0.83797 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.43 -14.16 10.70 -148.98 -1.59 -15.76 16 3 C 0.06 1.60 5.47 71.98 0.39 2.00 16 4 C -0.10 -3.42 3.54 30.59 0.11 -3.31 16 5 C 0.12 3.37 3.20 44.97 0.14 3.51 16 6 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 7 C 0.06 1.24 5.71 72.08 0.41 1.65 16 8 O -0.39 -7.90 10.74 -148.98 -1.60 -9.50 16 9 C 0.05 0.76 7.00 72.22 0.51 1.27 16 10 C 0.07 1.37 6.55 86.50 0.57 1.94 16 11 N -0.63 -18.69 3.01 -792.72 -2.39 -21.08 16 12 C 0.51 20.11 7.37 87.66 0.65 20.76 16 13 O -0.54 -27.21 10.54 -3.03 -0.03 -27.24 16 14 C -0.11 -3.90 3.29 29.85 0.10 -3.80 16 15 C 0.05 2.42 1.24 -12.29 -0.02 2.40 16 16 H 0.03 1.52 5.28 -2.39 -0.01 1.51 16 17 C -0.46 -26.35 7.20 25.60 0.18 -26.16 16 18 H 0.03 2.09 8.05 -2.91 -0.02 2.06 16 19 C 0.02 1.26 5.47 84.66 0.46 1.73 16 20 N -0.95 -63.63 13.96 21.45 0.30 -63.34 16 21 Si 0.92 49.03 24.71 68.60 1.70 50.72 16 22 H -0.26 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.30 -16.46 7.11 99.48 0.71 -15.76 16 24 H -0.25 -12.78 5.89 99.48 0.59 -12.19 16 25 C -0.06 -2.53 4.30 -19.87 -0.09 -2.62 16 26 C -0.16 -6.28 8.12 22.27 0.18 -6.10 16 27 C -0.12 -3.90 10.05 22.27 0.22 -3.68 16 28 C -0.14 -3.90 10.05 22.27 0.22 -3.68 16 29 C -0.12 -3.53 10.05 22.27 0.22 -3.31 16 30 C -0.12 -4.36 8.94 22.27 0.20 -4.16 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.07 1.51 6.93 -2.39 -0.02 1.49 16 36 H 0.05 2.12 7.25 -2.39 -0.02 2.10 16 37 H 0.06 2.66 6.31 -2.39 -0.02 2.64 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.13 1.99 7.04 -2.39 -0.02 1.98 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.11 1.88 6.07 -2.38 -0.01 1.86 16 44 H 0.10 3.24 7.32 -2.39 -0.02 3.22 16 45 H 0.10 2.99 7.44 -2.39 -0.02 2.97 16 46 H 0.26 16.48 8.31 -92.71 -0.77 15.70 16 47 H 0.10 3.95 6.67 -2.91 -0.02 3.94 16 48 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 49 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 50 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 51 H 0.12 4.14 7.36 -2.91 -0.02 4.12 16 Total: -1.00 -83.74 393.80 2.89 -80.85 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.79 Total: 25.09 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 5.72 Total: -19.75 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.09 Total: -84.41 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -3.23 Total: -52.50 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 1.70 Total: 50.72 kcal Total: -83.74 2.89 -80.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360937696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.431 kcal (2) G-P(sol) polarization free energy of solvation -83.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds