Wall clock time and date at job start Wed Apr 1 2020 05:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99805 * 2 1 4 4 C 1.53000 * 109.47009 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46910 * 185.24866 * 4 3 2 6 6 H 1.08996 * 109.71152 * 59.56538 * 5 4 3 7 7 C 1.52883 * 109.61941 * 299.25326 * 5 4 3 8 8 O 1.42958 * 109.30209 * 188.11743 * 7 5 4 9 9 C 1.42963 * 114.16220 * 62.45022 * 8 7 5 10 10 C 1.53290 * 109.22693 * 297.41895 * 9 8 7 11 11 N 1.47153 * 108.38287 * 52.30222 * 10 9 8 12 12 C 1.34781 * 120.97850 * 129.44001 * 11 10 9 13 13 O 1.21285 * 119.99759 * 185.11369 * 12 11 10 14 14 C 1.50697 * 120.00158 * 5.11453 * 12 11 10 15 15 C 1.52999 * 109.47221 * 179.97438 * 14 12 11 16 16 H 1.08997 * 109.47026 * 305.00072 * 15 14 12 17 17 C 1.50704 * 109.46950 * 64.99952 * 15 14 12 18 18 H 1.07992 * 120.00459 * 34.85060 * 17 15 14 19 19 C 1.37880 * 119.99785 * 214.85372 * 17 15 14 20 20 N 1.31522 * 120.00175 * 5.04224 * 19 17 15 21 21 Si 1.86798 * 120.00130 * 185.04058 * 19 17 15 22 22 H 1.48503 * 109.47016 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47412 * 120.00123 * 21 19 17 24 24 H 1.48502 * 109.47163 * 240.00247 * 21 19 17 25 25 C 1.50699 * 109.47421 * 184.99554 * 15 14 12 26 26 C 1.38235 * 119.99749 * 115.15688 * 25 15 14 27 27 C 1.38233 * 120.00009 * 179.97438 * 26 25 15 28 28 C 1.38233 * 119.99980 * 359.97438 * 27 26 25 29 29 C 1.38237 * 120.00105 * 0.08162 * 28 27 26 30 30 C 1.38229 * 120.00001 * 295.18450 * 25 15 14 31 31 H 1.08994 * 109.46726 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46914 * 299.99733 * 1 2 3 33 33 H 1.08997 * 109.47067 * 60.00084 * 1 2 3 34 34 H 1.08993 * 109.47390 * 60.00096 * 3 2 1 35 35 H 1.09004 * 109.46714 * 300.00105 * 3 2 1 36 36 H 1.09005 * 109.47487 * 65.24582 * 4 3 2 37 37 H 1.08997 * 109.46796 * 305.24575 * 4 3 2 38 38 H 1.09006 * 109.57580 * 68.10398 * 7 5 4 39 39 H 1.08999 * 109.36755 * 308.00730 * 7 5 4 40 40 H 1.09003 * 109.50922 * 177.49887 * 9 8 7 41 41 H 1.08993 * 109.51198 * 57.34989 * 9 8 7 42 42 H 1.09003 * 109.68350 * 292.58362 * 10 9 8 43 43 H 1.08997 * 109.68337 * 172.02423 * 10 9 8 44 44 H 1.08998 * 109.47224 * 59.99696 * 14 12 11 45 45 H 1.08999 * 109.46982 * 299.99656 * 14 12 11 46 46 H 0.97001 * 119.99705 * 179.97438 * 20 19 17 47 47 H 1.08005 * 119.99992 * 359.97438 * 26 25 15 48 48 H 1.08003 * 119.99748 * 179.72580 * 27 26 25 49 49 H 1.07997 * 120.00199 * 179.97438 * 28 27 26 50 50 H 1.07996 * 119.99886 * 179.97438 * 29 28 27 51 51 H 1.07997 * 120.00533 * 359.96942 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1573 2.5764 0.1313 6 1 3.8258 3.0406 1.0601 7 6 3.7315 3.4434 -1.0538 8 8 4.4613 4.6723 -1.0265 9 6 5.8757 4.5161 -1.1640 10 6 6.4115 3.7047 0.0211 11 7 5.6247 2.4658 0.1288 12 6 6.2301 1.2649 0.2169 13 8 5.5668 0.2495 0.2115 14 6 7.7312 1.1837 0.3220 15 6 8.1578 -0.2830 0.4090 16 1 7.6375 -0.7643 1.2370 17 6 7.8099 -0.9845 -0.8787 18 1 7.8748 -0.4542 -1.8172 19 6 7.4085 -2.3034 -0.8585 20 7 7.2336 -2.9201 0.2900 21 14 7.1130 -3.2145 -2.4622 22 1 7.3769 -2.3035 -3.6049 23 1 8.0231 -4.3852 -2.5414 24 1 5.7035 -3.6788 -2.5153 25 6 9.6454 -0.3609 0.6372 26 6 10.1370 -0.8889 1.8164 27 6 11.5015 -0.9608 2.0256 28 6 12.3744 -0.5053 1.0554 29 6 11.8829 0.0238 -0.1233 30 6 10.5183 0.0961 -0.3323 31 1 -0.3632 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6887 1.8464 0.8899 35 1 1.6885 1.8464 -0.8900 36 1 3.8634 0.7272 -0.9341 37 1 3.8511 0.5647 0.8384 38 1 2.6637 3.6524 -0.9883 39 1 3.9434 2.9145 -1.9831 40 1 6.3507 5.4972 -1.1778 41 1 6.0954 3.9914 -2.0936 42 1 6.3107 4.2845 0.9386 43 1 7.4604 3.4600 -0.1458 44 1 8.0619 1.7115 1.2166 45 1 8.1824 1.6421 -0.5579 46 1 6.9508 -3.8479 0.3041 47 1 9.4549 -1.2452 2.5743 48 1 11.8855 -1.3692 2.9488 49 1 13.4405 -0.5611 1.2190 50 1 12.5649 0.3800 -0.8811 51 1 10.1343 0.5086 -1.2536 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360937697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:58 Heat of formation + Delta-G solvation = -82.765175 kcal Electronic energy + Delta-G solvation = -31976.381690 eV Core-core repulsion = 27841.653192 eV Total energy + Delta-G solvation = -4134.728498 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.33358 -38.52536 -37.81013 -37.72459 -34.69248 -34.05819 -33.38022 -31.37935 -30.03912 -29.49590 -28.88844 -27.31982 -26.05439 -25.59609 -24.18476 -22.85954 -22.10193 -21.64121 -21.22121 -19.68484 -18.48729 -16.84692 -16.67068 -16.40396 -16.20564 -15.87274 -15.80099 -15.53113 -15.12986 -14.91448 -14.63166 -14.54832 -14.31695 -14.03684 -13.88321 -13.30979 -13.12388 -12.93044 -12.56456 -12.43433 -12.29679 -12.03636 -11.88316 -11.75843 -11.60842 -11.51816 -11.35330 -11.02519 -10.88093 -10.85506 -10.69839 -10.64347 -10.52868 -10.28453 -10.11381 -10.05614 -9.55192 -9.38590 -9.02345 -8.40264 -8.27593 -8.08047 -8.03841 -7.64127 -5.90629 -3.90003 2.25436 2.31199 3.18413 3.38372 3.46078 3.46971 3.49059 3.69708 3.95201 4.53332 4.70877 4.72548 4.94326 4.97090 5.08190 5.15253 5.19783 5.25804 5.36469 5.37414 5.41789 5.44233 5.49735 5.53788 5.62588 5.63841 5.65068 5.70228 5.71320 5.78892 5.82706 5.87190 6.07693 6.16684 6.25660 6.38355 6.51053 6.51233 6.59075 6.79192 6.88723 6.96368 7.02167 7.06674 7.28141 7.32479 7.43642 7.50767 7.87540 7.92081 7.93063 8.06473 8.40113 9.05452 9.10338 9.71472 11.19363 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.009351 B = 0.003955 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.500162 B = 7077.439341 C = 8875.809243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.055 3.945 4 C -0.110 4.110 5 C 0.124 3.876 6 H 0.072 0.928 7 C 0.047 3.953 8 O -0.383 6.383 9 C 0.045 3.955 10 C 0.078 3.922 11 N -0.632 5.632 12 C 0.514 3.486 13 O -0.472 6.472 14 C -0.120 4.120 15 C 0.077 3.923 16 H 0.077 0.923 17 C -0.493 4.493 18 H 0.049 0.951 19 C 0.081 3.919 20 N -0.876 5.876 21 Si 0.882 3.118 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.284 1.284 25 C -0.024 4.024 26 C -0.123 4.123 27 C -0.128 4.128 28 C -0.155 4.155 29 C -0.132 4.132 30 C -0.114 4.114 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.043 0.957 35 H 0.041 0.959 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.258 0.742 47 H 0.114 0.886 48 H 0.106 0.894 49 H 0.104 0.896 50 H 0.105 0.895 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.029 14.211 0.677 14.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.023 4.023 4 C -0.147 4.147 5 C 0.020 3.980 6 H 0.090 0.910 7 C -0.030 4.030 8 O -0.302 6.302 9 C -0.032 4.032 10 C -0.045 4.045 11 N -0.372 5.372 12 C 0.303 3.697 13 O -0.342 6.342 14 C -0.160 4.160 15 C 0.058 3.942 16 H 0.096 0.904 17 C -0.530 4.530 18 H 0.067 0.933 19 C -0.122 4.122 20 N -0.513 5.513 21 Si 0.711 3.289 22 H -0.200 1.200 23 H -0.213 1.213 24 H -0.210 1.210 25 C -0.025 4.025 26 C -0.141 4.141 27 C -0.146 4.146 28 C -0.173 4.173 29 C -0.150 4.150 30 C -0.132 4.132 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.115 0.885 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.132 0.868 48 H 0.124 0.876 49 H 0.122 0.878 50 H 0.124 0.876 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.418 13.418 0.779 14.148 hybrid contribution -0.164 -0.584 -1.023 1.189 sum -4.582 12.834 -0.243 13.630 Atomic orbital electron populations 1.22718 0.81778 1.02572 0.99459 1.87997 1.18940 1.27833 1.95230 1.22780 0.95833 0.84573 0.99074 1.22074 0.90089 0.95033 1.07548 1.21582 0.81400 0.96736 0.98320 0.91041 1.23108 0.96444 0.85512 0.97957 1.87914 1.18208 1.29732 1.94300 1.23002 0.81789 1.00903 0.97519 1.22296 0.97043 0.86278 0.98914 1.48407 1.04979 1.06660 1.77116 1.20961 0.91209 0.81760 0.75742 1.90826 1.64462 1.33796 1.45165 1.21828 0.90941 1.02347 1.00878 1.17880 0.86659 0.88795 1.00895 0.90446 1.20653 1.45012 0.96153 0.91204 0.93292 1.24781 0.94198 0.97802 0.95461 1.69896 1.45887 1.11280 1.24253 0.86701 0.77773 0.79931 0.84514 1.20020 1.21274 1.21037 1.20797 0.98630 0.91884 0.91143 1.21118 0.94497 1.00503 0.97968 1.20990 0.93938 1.00962 0.98693 1.20804 0.98363 1.02934 0.95237 1.20992 0.95611 1.01281 0.97089 1.20958 0.92333 1.00910 0.99035 0.89799 0.94400 0.94441 0.93867 0.94086 0.89664 0.87259 0.88286 0.92410 0.87979 0.92519 0.91203 0.88475 0.91822 0.90800 0.93200 0.86823 0.87609 0.87776 0.87642 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -6.15 10.70 -35.23 -0.38 -6.53 16 3 C 0.05 0.75 5.46 37.16 0.20 0.95 16 4 C -0.11 -1.83 3.54 -26.73 -0.09 -1.92 16 5 C 0.12 1.74 3.19 -67.63 -0.22 1.53 16 6 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 7 C 0.05 0.58 5.69 37.10 0.21 0.79 16 8 O -0.38 -4.76 10.74 -35.23 -0.38 -5.14 16 9 C 0.05 0.48 6.98 37.31 0.26 0.74 16 10 C 0.08 0.91 6.52 -3.54 -0.02 0.89 16 11 N -0.63 -9.71 3.03 -164.99 -0.50 -10.21 16 12 C 0.51 10.03 7.37 -10.99 -0.08 9.95 16 13 O -0.47 -11.22 10.54 5.55 0.06 -11.16 16 14 C -0.12 -2.26 3.42 -27.89 -0.10 -2.35 16 15 C 0.08 1.79 1.77 -92.92 -0.16 1.63 16 16 H 0.08 2.10 6.80 -51.93 -0.35 1.74 16 17 C -0.49 -12.99 6.31 -34.44 -0.22 -13.21 16 18 H 0.05 1.30 7.82 -52.49 -0.41 0.89 16 19 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 20 N -0.88 -25.70 12.77 55.43 0.71 -24.99 16 21 Si 0.88 22.23 29.54 -169.99 -5.02 17.21 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 25 C -0.02 -0.52 4.77 -104.63 -0.50 -1.01 16 26 C -0.12 -2.54 9.67 -39.58 -0.38 -2.92 16 27 C -0.13 -2.31 10.05 -39.59 -0.40 -2.71 16 28 C -0.16 -2.64 10.05 -39.58 -0.40 -3.04 16 29 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 30 C -0.11 -2.25 8.87 -39.58 -0.35 -2.60 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.04 0.48 6.94 -51.93 -0.36 0.12 16 36 H 0.08 1.67 7.29 -51.93 -0.38 1.29 16 37 H 0.11 2.20 6.26 -51.93 -0.32 1.88 16 38 H 0.10 1.00 7.04 -51.93 -0.37 0.64 16 39 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 1.05 6.07 -51.93 -0.32 0.73 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.07 1.28 7.18 -51.93 -0.37 0.91 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.11 2.37 7.95 -52.48 -0.42 1.95 16 48 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 49 H 0.10 1.48 8.06 -52.49 -0.42 1.05 16 50 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 51 H 0.11 2.15 7.80 -52.49 -0.41 1.74 16 LS Contribution 403.85 15.07 6.09 6.09 Total: -1.00 -32.62 403.85 -9.39 -42.01 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -8.34 Total: 5.06 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.63 Total: -12.33 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.21 Total: -35.20 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.70 Total: -22.83 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.62 -9.39 -42.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360937697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.752 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds