Wall clock time and date at job start Wed Apr 1 2020 05:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99805 * 2 1 4 4 C 1.53000 * 109.47009 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46910 * 185.24866 * 4 3 2 6 6 H 1.08996 * 109.71152 * 59.56538 * 5 4 3 7 7 C 1.52883 * 109.61941 * 299.25326 * 5 4 3 8 8 O 1.42958 * 109.30209 * 188.11743 * 7 5 4 9 9 C 1.42963 * 114.16220 * 62.45022 * 8 7 5 10 10 C 1.53290 * 109.22693 * 297.41895 * 9 8 7 11 11 N 1.47153 * 108.38287 * 52.30222 * 10 9 8 12 12 C 1.34781 * 120.97850 * 129.44001 * 11 10 9 13 13 O 1.21285 * 119.99759 * 185.11369 * 12 11 10 14 14 C 1.50697 * 120.00158 * 5.11453 * 12 11 10 15 15 C 1.52999 * 109.47221 * 179.97438 * 14 12 11 16 16 H 1.08997 * 109.47026 * 305.00072 * 15 14 12 17 17 C 1.50704 * 109.46950 * 64.99952 * 15 14 12 18 18 H 1.07992 * 120.00459 * 34.85060 * 17 15 14 19 19 C 1.37880 * 119.99785 * 214.85372 * 17 15 14 20 20 N 1.31522 * 120.00175 * 5.04224 * 19 17 15 21 21 Si 1.86798 * 120.00130 * 185.04058 * 19 17 15 22 22 H 1.48503 * 109.47016 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47412 * 120.00123 * 21 19 17 24 24 H 1.48502 * 109.47163 * 240.00247 * 21 19 17 25 25 C 1.50699 * 109.47421 * 184.99554 * 15 14 12 26 26 C 1.38235 * 119.99749 * 115.15688 * 25 15 14 27 27 C 1.38233 * 120.00009 * 179.97438 * 26 25 15 28 28 C 1.38233 * 119.99980 * 359.97438 * 27 26 25 29 29 C 1.38237 * 120.00105 * 0.08162 * 28 27 26 30 30 C 1.38229 * 120.00001 * 295.18450 * 25 15 14 31 31 H 1.08994 * 109.46726 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46914 * 299.99733 * 1 2 3 33 33 H 1.08997 * 109.47067 * 60.00084 * 1 2 3 34 34 H 1.08993 * 109.47390 * 60.00096 * 3 2 1 35 35 H 1.09004 * 109.46714 * 300.00105 * 3 2 1 36 36 H 1.09005 * 109.47487 * 65.24582 * 4 3 2 37 37 H 1.08997 * 109.46796 * 305.24575 * 4 3 2 38 38 H 1.09006 * 109.57580 * 68.10398 * 7 5 4 39 39 H 1.08999 * 109.36755 * 308.00730 * 7 5 4 40 40 H 1.09003 * 109.50922 * 177.49887 * 9 8 7 41 41 H 1.08993 * 109.51198 * 57.34989 * 9 8 7 42 42 H 1.09003 * 109.68350 * 292.58362 * 10 9 8 43 43 H 1.08997 * 109.68337 * 172.02423 * 10 9 8 44 44 H 1.08998 * 109.47224 * 59.99696 * 14 12 11 45 45 H 1.08999 * 109.46982 * 299.99656 * 14 12 11 46 46 H 0.97001 * 119.99705 * 179.97438 * 20 19 17 47 47 H 1.08005 * 119.99992 * 359.97438 * 26 25 15 48 48 H 1.08003 * 119.99748 * 179.72580 * 27 26 25 49 49 H 1.07997 * 120.00199 * 179.97438 * 28 27 26 50 50 H 1.07996 * 119.99886 * 179.97438 * 29 28 27 51 51 H 1.07997 * 120.00533 * 359.96942 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1573 2.5764 0.1313 6 1 3.8258 3.0406 1.0601 7 6 3.7315 3.4434 -1.0538 8 8 4.4613 4.6723 -1.0265 9 6 5.8757 4.5161 -1.1640 10 6 6.4115 3.7047 0.0211 11 7 5.6247 2.4658 0.1288 12 6 6.2301 1.2649 0.2169 13 8 5.5668 0.2495 0.2115 14 6 7.7312 1.1837 0.3220 15 6 8.1578 -0.2830 0.4090 16 1 7.6375 -0.7643 1.2370 17 6 7.8099 -0.9845 -0.8787 18 1 7.8748 -0.4542 -1.8172 19 6 7.4085 -2.3034 -0.8585 20 7 7.2336 -2.9201 0.2900 21 14 7.1130 -3.2145 -2.4622 22 1 7.3769 -2.3035 -3.6049 23 1 8.0231 -4.3852 -2.5414 24 1 5.7035 -3.6788 -2.5153 25 6 9.6454 -0.3609 0.6372 26 6 10.1370 -0.8889 1.8164 27 6 11.5015 -0.9608 2.0256 28 6 12.3744 -0.5053 1.0554 29 6 11.8829 0.0238 -0.1233 30 6 10.5183 0.0961 -0.3323 31 1 -0.3632 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6887 1.8464 0.8899 35 1 1.6885 1.8464 -0.8900 36 1 3.8634 0.7272 -0.9341 37 1 3.8511 0.5647 0.8384 38 1 2.6637 3.6524 -0.9883 39 1 3.9434 2.9145 -1.9831 40 1 6.3507 5.4972 -1.1778 41 1 6.0954 3.9914 -2.0936 42 1 6.3107 4.2845 0.9386 43 1 7.4604 3.4600 -0.1458 44 1 8.0619 1.7115 1.2166 45 1 8.1824 1.6421 -0.5579 46 1 6.9508 -3.8479 0.3041 47 1 9.4549 -1.2452 2.5743 48 1 11.8855 -1.3692 2.9488 49 1 13.4405 -0.5611 1.2190 50 1 12.5649 0.3800 -0.8811 51 1 10.1343 0.5086 -1.2536 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360937697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:57 Heat of formation + Delta-G solvation = -103.264715 kcal Electronic energy + Delta-G solvation = -31977.270617 eV Core-core repulsion = 27841.653192 eV Total energy + Delta-G solvation = -4135.617425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.60055 -39.98933 -39.10021 -38.85072 -36.11523 -35.54625 -34.71665 -33.27702 -31.50895 -30.56567 -30.32301 -28.52241 -27.35557 -27.05322 -25.43363 -24.39369 -23.26446 -23.06822 -22.49661 -21.24414 -19.87870 -18.49800 -17.99644 -17.78619 -17.42726 -17.17225 -16.91303 -16.59727 -16.52300 -16.34183 -15.90995 -15.79791 -15.73728 -15.42855 -15.33073 -14.68032 -14.62207 -14.10842 -14.00665 -13.96180 -13.63935 -13.42074 -13.35298 -13.18557 -13.00662 -12.89788 -12.71008 -12.47670 -12.40729 -12.34199 -12.10542 -12.00755 -11.82817 -11.73733 -11.69319 -11.23092 -11.16319 -10.92708 -10.62029 -10.48291 -9.79947 -9.55183 -9.33830 -9.18957 -8.02937 -6.04614 0.76855 0.82952 1.32905 1.36456 1.43238 1.95329 2.01431 2.45290 2.73260 2.95662 3.17876 3.36522 3.66147 3.83378 3.96842 4.02271 4.17744 4.19242 4.25073 4.26059 4.32346 4.36137 4.37454 4.39914 4.43755 4.50411 4.51955 4.55164 4.59972 4.64495 4.68171 4.72782 4.80093 4.83721 4.92393 4.93704 4.99778 5.17645 5.21735 5.34363 5.38480 5.51802 5.67238 5.74058 5.78301 5.83387 5.95354 6.08618 6.17448 6.29598 6.41896 6.46550 6.57084 7.03798 7.56907 7.59803 9.06772 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.009351 B = 0.003955 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.500162 B = 7077.439341 C = 8875.809243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.427 6.427 3 C 0.059 3.941 4 C -0.097 4.097 5 C 0.123 3.877 6 H 0.089 0.911 7 C 0.056 3.944 8 O -0.386 6.386 9 C 0.045 3.955 10 C 0.071 3.929 11 N -0.629 5.629 12 C 0.508 3.492 13 O -0.529 6.529 14 C -0.111 4.111 15 C 0.080 3.920 16 H 0.027 0.973 17 C -0.479 4.479 18 H 0.045 0.955 19 C 0.026 3.974 20 N -0.914 5.914 21 Si 0.928 3.072 22 H -0.264 1.264 23 H -0.282 1.282 24 H -0.296 1.296 25 C -0.048 4.048 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.147 4.147 29 C -0.125 4.125 30 C -0.125 4.125 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.063 0.937 38 H 0.127 0.873 39 H 0.045 0.955 40 H 0.138 0.862 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.251 0.749 47 H 0.093 0.907 48 H 0.132 0.868 49 H 0.144 0.856 50 H 0.142 0.858 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 17.472 -0.184 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.347 6.347 3 C -0.018 4.018 4 C -0.135 4.135 5 C 0.020 3.980 6 H 0.107 0.893 7 C -0.021 4.021 8 O -0.304 6.304 9 C -0.032 4.032 10 C -0.051 4.051 11 N -0.366 5.366 12 C 0.297 3.703 13 O -0.403 6.403 14 C -0.151 4.151 15 C 0.061 3.939 16 H 0.046 0.954 17 C -0.517 4.517 18 H 0.063 0.937 19 C -0.173 4.173 20 N -0.554 5.554 21 Si 0.756 3.244 22 H -0.188 1.188 23 H -0.208 1.208 24 H -0.223 1.223 25 C -0.049 4.049 26 C -0.166 4.166 27 C -0.146 4.146 28 C -0.165 4.165 29 C -0.143 4.143 30 C -0.143 4.143 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.144 0.856 39 H 0.063 0.937 40 H 0.156 0.844 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.125 0.875 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.060 0.940 47 H 0.111 0.889 48 H 0.149 0.851 49 H 0.162 0.838 50 H 0.159 0.841 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.885 16.751 -0.102 16.998 hybrid contribution -0.578 -1.498 -0.698 1.751 sum -3.463 15.253 -0.800 15.662 Atomic orbital electron populations 1.22933 0.79387 1.03521 1.01212 1.87943 1.21750 1.29412 1.95606 1.22777 0.93383 0.84296 1.01333 1.21721 0.92742 0.95681 1.03363 1.21702 0.80468 0.95565 1.00277 0.89330 1.23054 0.97977 0.85075 0.96037 1.87922 1.19055 1.29322 1.94132 1.23174 0.81107 1.02464 0.96415 1.22636 0.97150 0.84695 1.00578 1.48382 1.06063 1.06744 1.75455 1.21111 0.91407 0.82386 0.75378 1.90846 1.65486 1.36113 1.47868 1.21673 0.90947 0.99757 1.02710 1.17642 0.87986 0.90792 0.97461 0.95430 1.20923 1.42791 0.95782 0.92205 0.93719 1.25433 0.95199 0.99106 0.97547 1.70050 1.48495 1.11056 1.25802 0.85962 0.76876 0.79272 0.82276 1.18760 1.20795 1.22281 1.20593 0.97513 0.94104 0.92660 1.21127 0.95925 1.01753 0.97786 1.21286 0.92693 1.00368 1.00220 1.21274 1.00178 1.00811 0.94202 1.21387 0.94935 0.99936 0.98036 1.21040 0.93417 1.01365 0.98526 0.89447 0.92604 0.92577 0.91530 0.91477 0.93754 0.91800 0.85550 0.93679 0.84432 0.93234 0.89203 0.87521 0.89606 0.88873 0.93990 0.88889 0.85052 0.83834 0.84053 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.43 -14.20 10.70 -148.98 -1.59 -15.79 16 3 C 0.06 1.61 5.46 71.98 0.39 2.00 16 4 C -0.10 -3.43 3.54 30.59 0.11 -3.32 16 5 C 0.12 3.45 3.19 44.83 0.14 3.59 16 6 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 7 C 0.06 1.27 5.69 71.94 0.41 1.68 16 8 O -0.39 -8.41 10.74 -148.98 -1.60 -10.01 16 9 C 0.05 0.83 6.98 72.08 0.50 1.33 16 10 C 0.07 1.50 6.52 86.35 0.56 2.06 16 11 N -0.63 -19.29 3.03 -794.29 -2.40 -21.69 16 12 C 0.51 20.75 7.37 87.66 0.65 21.39 16 13 O -0.53 -27.30 10.54 -3.05 -0.03 -27.34 16 14 C -0.11 -4.28 3.42 29.85 0.10 -4.18 16 15 C 0.08 3.95 1.77 -12.29 -0.02 3.93 16 16 H 0.03 1.62 6.80 -2.39 -0.02 1.60 16 17 C -0.48 -26.38 6.31 25.60 0.16 -26.22 16 18 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 19 C 0.03 1.53 5.45 84.65 0.46 1.99 16 20 N -0.91 -57.37 12.77 21.45 0.27 -57.10 16 21 Si 0.93 47.48 29.54 68.60 2.03 49.51 16 22 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.30 -15.54 7.11 99.48 0.71 -14.83 16 25 C -0.05 -2.12 4.77 -19.87 -0.09 -2.22 16 26 C -0.15 -6.26 9.67 22.27 0.22 -6.05 16 27 C -0.13 -4.40 10.05 22.27 0.22 -4.18 16 28 C -0.15 -4.44 10.05 22.27 0.22 -4.22 16 29 C -0.13 -3.94 10.05 22.27 0.22 -3.72 16 30 C -0.13 -4.78 8.87 22.27 0.20 -4.58 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.47 6.94 -2.38 -0.02 1.45 16 36 H 0.04 1.89 7.29 -2.38 -0.02 1.87 16 37 H 0.06 2.84 6.26 -2.39 -0.01 2.82 16 38 H 0.13 2.16 7.04 -2.38 -0.02 2.15 16 39 H 0.04 1.15 8.13 -2.39 -0.02 1.13 16 40 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.11 2.04 6.07 -2.39 -0.01 2.02 16 44 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 45 H 0.09 3.19 7.18 -2.39 -0.02 3.17 16 46 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 47 H 0.09 4.20 7.95 -2.91 -0.02 4.18 16 48 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 49 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 50 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 51 H 0.12 4.26 7.80 -2.91 -0.02 4.23 16 Total: -1.00 -78.49 403.85 3.28 -75.21 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.90 Total: 26.11 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 5.71 Total: -18.89 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -2.13 Total: -78.79 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -3.23 Total: -53.14 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -78.49 3.28 -75.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360937697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.052 kcal (2) G-P(sol) polarization free energy of solvation -78.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds