Wall clock time and date at job start Wed Apr 1 2020 05:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00045 * 2 1 4 4 C 1.53004 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47191 * 184.86550 * 4 3 2 6 6 H 1.08998 * 109.67853 * 298.20856 * 5 4 3 7 7 C 1.53296 * 109.68285 * 58.76742 * 5 4 3 8 8 O 1.42966 * 109.22397 * 172.02684 * 7 5 4 9 9 C 1.42958 * 114.16272 * 297.41843 * 8 7 5 10 10 C 1.52879 * 109.30279 * 62.45026 * 9 8 7 11 11 N 1.47151 * 109.68324 * 177.69322 * 5 4 3 12 12 C 1.34784 * 120.97986 * 9.71349 * 11 5 4 13 13 O 1.21278 * 119.99840 * 5.41177 * 12 11 5 14 14 C 1.50696 * 119.99864 * 185.40373 * 12 11 5 15 15 C 1.53005 * 109.47032 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.46793 * 306.16828 * 15 14 12 17 17 C 1.50699 * 109.46973 * 66.16823 * 15 14 12 18 18 H 1.07996 * 120.00194 * 35.31532 * 17 15 14 19 19 C 1.37883 * 119.99717 * 215.31307 * 17 15 14 20 20 N 1.31507 * 119.99792 * 175.14724 * 19 17 15 21 21 Si 1.86797 * 119.99922 * 355.15112 * 19 17 15 22 22 H 1.48503 * 109.47148 * 94.88219 * 21 19 17 23 23 H 1.48497 * 109.47351 * 214.87872 * 21 19 17 24 24 H 1.48495 * 109.47450 * 334.88366 * 21 19 17 25 25 C 1.50699 * 109.47073 * 186.16785 * 15 14 12 26 26 C 1.38234 * 120.00298 * 114.70494 * 25 15 14 27 27 C 1.38229 * 120.00391 * 180.02562 * 26 25 15 28 28 C 1.38234 * 120.00043 * 0.02562 * 27 26 25 29 29 C 1.38236 * 120.00053 * 359.97438 * 28 27 26 30 30 C 1.38234 * 120.00135 * 294.72776 * 25 15 14 31 31 H 1.09003 * 109.47439 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47034 * 299.99814 * 1 2 3 33 33 H 1.08998 * 109.47335 * 59.99995 * 1 2 3 34 34 H 1.09003 * 109.47184 * 59.99974 * 3 2 1 35 35 H 1.08995 * 109.47158 * 299.99851 * 3 2 1 36 36 H 1.08995 * 109.46792 * 64.86403 * 4 3 2 37 37 H 1.09001 * 109.47129 * 304.86695 * 4 3 2 38 38 H 1.09000 * 109.50943 * 291.94676 * 7 5 4 39 39 H 1.08993 * 109.51569 * 52.04839 * 7 5 4 40 40 H 1.08998 * 109.50934 * 182.50556 * 9 8 7 41 41 H 1.09001 * 109.51294 * 302.60495 * 9 8 7 42 42 H 1.08999 * 109.62052 * 188.11512 * 10 9 8 43 43 H 1.09001 * 109.52083 * 67.69673 * 10 9 8 44 44 H 1.09001 * 109.46938 * 60.00308 * 14 12 11 45 45 H 1.08998 * 109.47568 * 300.00757 * 14 12 11 46 46 H 0.97005 * 120.00229 * 179.97438 * 20 19 17 47 47 H 1.08004 * 119.99488 * 0.02562 * 26 25 15 48 48 H 1.08005 * 120.00188 * 179.97438 * 27 26 25 49 49 H 1.08001 * 120.00311 * 179.69406 * 28 27 26 50 50 H 1.07992 * 120.00588 * 179.97438 * 29 28 27 51 51 H 1.08005 * 119.99660 * 0.02562 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1574 2.5771 0.1217 6 1 3.8690 3.1846 -0.7362 7 6 3.6757 3.2460 1.4142 8 8 4.4009 4.4618 1.6136 9 6 5.8085 4.2819 1.7871 10 6 6.3991 3.6648 0.5192 11 7 5.6233 2.4621 0.1771 12 6 6.2371 1.2883 -0.0724 13 8 5.5895 0.3322 -0.4430 14 6 7.7279 1.1641 0.1089 15 6 8.1671 -0.2597 -0.2390 16 1 7.5815 -0.9725 0.3415 17 6 7.9473 -0.5081 -1.7091 18 1 8.0959 0.2912 -2.4199 19 6 7.5565 -1.7559 -2.1465 20 7 7.2723 -1.9485 -3.4159 21 14 7.4307 -3.1729 -0.9358 22 1 6.0306 -3.2904 -0.4551 23 1 7.8309 -4.4352 -1.6078 24 1 8.3305 -2.9196 0.2180 25 6 9.6290 -0.4279 0.0858 26 6 10.0197 -1.3049 1.0803 27 6 11.3606 -1.4588 1.3786 28 6 12.3110 -0.7353 0.6827 29 6 11.9204 0.1417 -0.3118 30 6 10.5794 0.2952 -0.6105 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6885 1.8464 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 3.8627 0.7210 -0.9312 37 1 3.8516 0.5701 0.8423 38 1 2.6110 3.4659 1.3354 39 1 3.8477 2.5763 2.2567 40 1 6.2782 5.2471 1.9766 41 1 5.9891 3.6170 2.6317 42 1 7.4398 3.3926 0.6952 43 1 6.3403 4.3842 -0.2975 44 1 7.9873 1.3818 1.1449 45 1 8.2341 1.8710 -0.5485 46 1 6.9978 -2.8264 -3.7238 47 1 9.2771 -1.8699 1.6243 48 1 11.6658 -2.1437 2.1559 49 1 13.3583 -0.8519 0.9191 50 1 12.6627 0.7073 -0.8552 51 1 10.2742 0.9810 -1.3870 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360937699.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:05 Heat of formation + Delta-G solvation = -104.189273 kcal Electronic energy + Delta-G solvation = -32021.961759 eV Core-core repulsion = 27886.304242 eV Total energy + Delta-G solvation = -4135.657517 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.66685 -40.12616 -39.17036 -38.87221 -36.18780 -35.62186 -34.74691 -33.61293 -31.60134 -30.61374 -30.40706 -28.66766 -27.59575 -27.07731 -25.41543 -24.28490 -23.38945 -23.13160 -22.52454 -21.15767 -19.90432 -18.99409 -18.18520 -17.81860 -17.45574 -17.24508 -16.91097 -16.62120 -16.48702 -16.43647 -16.01385 -15.90837 -15.62449 -15.42593 -15.30649 -14.86516 -14.72054 -14.43568 -14.15285 -13.98236 -13.86201 -13.51562 -13.46961 -13.31306 -13.04169 -12.90655 -12.61688 -12.57809 -12.35423 -12.16459 -12.07092 -11.99039 -11.89109 -11.78837 -11.75754 -11.47284 -11.18439 -11.03030 -10.66330 -10.62985 -9.86175 -9.60065 -9.42816 -9.28186 -8.22363 -6.18313 0.69030 0.73943 1.30898 1.36334 1.41324 1.88314 1.93158 2.41258 2.71191 2.94575 3.09251 3.23811 3.62428 3.78081 3.93013 4.00893 4.11511 4.13493 4.17504 4.20808 4.27962 4.29318 4.32873 4.37713 4.40965 4.44874 4.48647 4.50282 4.51132 4.61640 4.62759 4.65488 4.79425 4.80866 4.86078 4.88627 4.92273 5.07934 5.13170 5.19776 5.30778 5.38530 5.41550 5.66881 5.70497 5.78085 5.83919 6.03449 6.09249 6.26225 6.32953 6.36923 6.50577 6.80853 7.45593 7.48587 8.94620 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.004019 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.798721 B = 6965.625360 C = 8904.982659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.427 6.427 3 C 0.060 3.940 4 C -0.105 4.105 5 C 0.121 3.879 6 H 0.079 0.921 7 C 0.059 3.941 8 O -0.388 6.388 9 C 0.047 3.953 10 C 0.069 3.931 11 N -0.626 5.626 12 C 0.510 3.490 13 O -0.540 6.540 14 C -0.109 4.109 15 C 0.060 3.940 16 H 0.029 0.971 17 C -0.461 4.461 18 H 0.033 0.967 19 C 0.025 3.975 20 N -0.953 5.953 21 Si 0.914 3.086 22 H -0.295 1.295 23 H -0.299 1.299 24 H -0.218 1.218 25 C -0.063 4.063 26 C -0.151 4.151 27 C -0.125 4.125 28 C -0.140 4.140 29 C -0.125 4.125 30 C -0.118 4.118 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.126 0.874 39 H 0.055 0.945 40 H 0.137 0.863 41 H 0.059 0.941 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.256 0.744 47 H 0.108 0.892 48 H 0.139 0.861 49 H 0.146 0.854 50 H 0.139 0.861 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.269 14.035 14.688 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.346 6.346 3 C -0.017 4.017 4 C -0.143 4.143 5 C 0.018 3.982 6 H 0.097 0.903 7 C -0.018 4.018 8 O -0.306 6.306 9 C -0.030 4.030 10 C -0.053 4.053 11 N -0.363 5.363 12 C 0.300 3.700 13 O -0.416 6.416 14 C -0.149 4.149 15 C 0.041 3.959 16 H 0.048 0.952 17 C -0.499 4.499 18 H 0.052 0.948 19 C -0.171 4.171 20 N -0.594 5.594 21 Si 0.741 3.259 22 H -0.222 1.222 23 H -0.226 1.226 24 H -0.140 1.140 25 C -0.063 4.063 26 C -0.169 4.169 27 C -0.143 4.143 28 C -0.157 4.157 29 C -0.143 4.143 30 C -0.136 4.136 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.143 0.857 39 H 0.073 0.927 40 H 0.154 0.846 41 H 0.077 0.923 42 H 0.129 0.871 43 H 0.100 0.900 44 H 0.120 0.880 45 H 0.112 0.888 46 H 0.065 0.935 47 H 0.126 0.874 48 H 0.157 0.843 49 H 0.164 0.836 50 H 0.157 0.843 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.625 13.406 14.377 19.832 hybrid contribution -0.583 -1.359 -0.592 1.593 sum -3.208 12.047 13.785 18.586 Atomic orbital electron populations 1.22940 0.79315 1.03612 1.01209 1.87915 1.21806 1.29303 1.95612 1.22760 0.93212 0.84369 1.01362 1.21764 0.93029 0.95601 1.03865 1.21766 0.80345 0.96244 0.99865 0.90265 1.23126 0.97727 0.86389 0.94604 1.87937 1.19884 1.30030 1.92745 1.23106 0.81015 1.03398 0.95458 1.22589 0.97379 0.86280 0.99049 1.48335 1.06365 1.10212 1.71424 1.21121 0.91080 0.81892 0.75910 1.90784 1.66210 1.39942 1.44670 1.21618 0.90946 0.99439 1.02874 1.17977 0.89205 0.93599 0.95129 0.95230 1.20767 1.42488 0.95690 0.90973 0.94831 1.25575 0.94444 1.01233 0.95833 1.70032 1.49304 1.23261 1.16836 0.86268 0.78532 0.79205 0.81937 1.22247 1.22584 1.14010 1.20476 0.96914 0.95318 0.93619 1.21252 0.96977 0.99815 0.98893 1.21327 0.92342 1.00066 1.00586 1.21331 1.00190 0.97309 0.96902 1.21392 0.95414 0.99283 0.98183 1.21004 0.93238 1.00445 0.98936 0.89271 0.92141 0.93113 0.90702 0.92375 0.91692 0.93154 0.85661 0.92677 0.84550 0.92298 0.87067 0.90039 0.87956 0.88802 0.93494 0.87372 0.84348 0.83632 0.84301 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.43 -13.72 10.70 -148.98 -1.59 -15.31 16 3 C 0.06 1.61 5.70 71.98 0.41 2.02 16 4 C -0.10 -3.61 3.58 30.59 0.11 -3.50 16 5 C 0.12 3.38 3.23 44.97 0.15 3.52 16 6 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 7 C 0.06 1.23 5.65 72.08 0.41 1.64 16 8 O -0.39 -7.92 10.74 -148.98 -1.60 -9.52 16 9 C 0.05 0.77 6.97 71.94 0.50 1.27 16 10 C 0.07 1.41 6.52 86.21 0.56 1.97 16 11 N -0.63 -18.87 3.03 -794.33 -2.40 -21.27 16 12 C 0.51 20.22 7.28 87.65 0.64 20.86 16 13 O -0.54 -27.23 10.78 -3.02 -0.03 -27.27 16 14 C -0.11 -3.95 3.32 29.85 0.10 -3.85 16 15 C 0.06 2.74 1.17 -12.29 -0.01 2.73 16 16 H 0.03 1.45 5.08 -2.39 -0.01 1.44 16 17 C -0.46 -26.21 6.93 25.60 0.18 -26.03 16 18 H 0.03 2.10 8.06 -2.91 -0.02 2.07 16 19 C 0.03 1.56 5.47 84.66 0.46 2.03 16 20 N -0.95 -63.44 13.96 21.45 0.30 -63.14 16 21 Si 0.91 48.63 26.94 68.60 1.85 50.47 16 22 H -0.30 -16.49 7.11 99.48 0.71 -15.79 16 23 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 24 H -0.22 -10.20 4.37 99.48 0.43 -9.76 16 25 C -0.06 -2.52 4.56 -19.87 -0.09 -2.61 16 26 C -0.15 -5.53 8.51 22.27 0.19 -5.34 16 27 C -0.13 -3.73 10.05 22.27 0.22 -3.51 16 28 C -0.14 -3.80 10.05 22.27 0.22 -3.57 16 29 C -0.12 -3.73 10.05 22.27 0.22 -3.51 16 30 C -0.12 -4.34 8.90 22.27 0.20 -4.15 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.49 6.35 -2.39 -0.02 1.48 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 2.95 6.12 -2.39 -0.01 2.94 16 37 H 0.05 1.96 7.43 -2.39 -0.02 1.94 16 38 H 0.13 1.98 6.79 -2.39 -0.02 1.97 16 39 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.11 1.96 6.04 -2.39 -0.01 1.95 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.10 2.96 7.86 -2.39 -0.02 2.94 16 45 H 0.09 3.18 7.62 -2.39 -0.02 3.17 16 46 H 0.26 16.38 8.31 -92.70 -0.77 15.61 16 47 H 0.11 3.94 6.98 -2.91 -0.02 3.92 16 48 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 49 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 50 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 51 H 0.11 4.13 7.84 -2.91 -0.02 4.11 16 Total: -1.00 -82.83 395.58 2.87 -79.96 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.64 Total: 24.33 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 5.72 Total: -18.26 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -2.10 Total: -84.41 kcal Atomic # 8 Polarization: -48.87 SS G_CDS: -3.23 Total: -52.10 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 1.85 Total: 50.47 kcal Total: -82.83 2.87 -79.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360937699.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.226 kcal (2) G-P(sol) polarization free energy of solvation -82.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds