Wall clock time and date at job start Wed Apr 1 2020 05:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35992 * 116.99677 * 2 1 4 4 C 1.38563 * 120.07805 * 359.97438 * 3 2 1 5 5 C 1.38243 * 119.99976 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.14586 * 0.27718 * 5 4 3 7 7 C 1.50704 * 119.92489 * 179.72109 * 6 5 4 8 8 N 1.46900 * 109.46779 * 89.99848 * 7 6 5 9 9 C 1.48564 * 110.99766 * 54.58673 * 8 7 6 10 10 C 1.54374 * 104.59218 * 159.03927 * 9 8 7 11 11 H 1.08999 * 118.15980 * 115.85118 * 10 9 8 12 12 C 1.53009 * 118.12752 * 272.76061 * 10 9 8 13 13 H 1.09005 * 117.43785 * 344.03170 * 12 10 9 14 14 C 1.52994 * 117.44500 * 199.31612 * 12 10 9 15 15 O 1.42901 * 109.46861 * 115.77791 * 14 12 10 16 16 C 1.53009 * 60.54228 * 91.67129 * 12 10 9 17 17 H 1.08998 * 120.22824 * 111.45181 * 16 12 10 18 18 C 1.48562 * 110.99545 * 169.99735 * 8 7 6 19 19 C 1.38237 * 120.14647 * 359.44595 * 6 5 4 20 20 C 1.38566 * 120.00165 * 0.55565 * 19 6 5 21 21 O 1.35990 * 120.07609 * 179.74870 * 20 19 6 22 22 C 1.42903 * 117.00015 * 359.97189 * 21 20 19 23 23 C 1.52997 * 109.47143 * 180.02562 * 22 21 20 24 24 C 1.50699 * 109.47295 * 180.02562 * 23 22 21 25 25 H 1.07999 * 119.99550 * 359.97438 * 24 23 22 26 26 C 1.37876 * 120.00084 * 180.02562 * 24 23 22 27 27 N 1.31511 * 120.00211 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 119.99776 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47221 * 359.97438 * 28 26 24 30 30 H 1.48501 * 109.47076 * 120.00233 * 28 26 24 31 31 H 1.48502 * 109.47324 * 239.99761 * 28 26 24 32 32 H 1.09001 * 109.47105 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47212 * 300.00645 * 1 2 3 34 34 H 1.09005 * 109.46487 * 60.00623 * 1 2 3 35 35 H 1.07997 * 119.99922 * 359.97438 * 4 3 2 36 36 H 1.08002 * 119.92283 * 179.97438 * 5 4 3 37 37 H 1.08992 * 109.46974 * 210.00057 * 7 6 5 38 38 H 1.09004 * 109.46882 * 330.00148 * 7 6 5 39 39 H 1.09004 * 110.40373 * 277.81237 * 9 8 7 40 40 H 1.08998 * 110.41370 * 40.25199 * 9 8 7 41 41 H 1.09006 * 109.46957 * 235.77473 * 14 12 10 42 42 H 1.08995 * 109.47036 * 355.77372 * 14 12 10 43 43 H 0.96702 * 113.99645 * 180.02562 * 15 14 12 44 44 H 1.08998 * 110.41522 * 319.74099 * 18 8 7 45 45 H 1.09001 * 110.40624 * 82.06479 * 18 8 7 46 46 H 1.07999 * 120.00087 * 180.27427 * 19 6 5 47 47 H 1.09001 * 109.46853 * 300.00261 * 22 21 20 48 48 H 1.08999 * 109.46861 * 60.00423 * 22 21 20 49 49 H 1.09007 * 109.47208 * 300.00232 * 23 22 21 50 50 H 1.08995 * 109.47243 * 59.99554 * 23 22 21 51 51 H 0.97000 * 119.99874 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9224 3.6057 0.0000 6 6 3.3030 3.6798 -0.0047 7 6 3.9837 5.0243 -0.0105 8 7 4.2094 5.4648 1.3727 9 6 4.9582 4.4384 2.1427 10 6 5.5752 5.2138 3.3265 11 1 5.2494 4.9579 4.3347 12 6 6.9368 5.8807 3.1206 13 1 7.5259 5.5646 2.2598 14 6 7.7401 6.2444 4.3709 15 8 8.9486 5.4823 4.3989 16 6 5.6595 6.6774 2.8466 17 1 5.3830 7.5103 3.4930 18 6 5.0863 6.6633 1.4133 19 6 4.0603 2.5233 0.0016 20 6 3.4360 1.2863 0.0010 21 8 4.1795 0.1477 0.0020 22 6 5.6003 0.3006 0.0031 23 6 6.2618 -1.0790 0.0035 24 6 7.7601 -0.9177 0.0052 25 1 8.1969 0.0701 0.0055 26 6 8.5734 -2.0311 0.0053 27 7 8.0415 -3.2338 0.0044 28 14 10.4306 -1.8311 0.0067 29 1 10.7729 -0.3860 0.0069 30 1 10.9969 -2.4746 1.2193 31 1 10.9987 -2.4736 -1.2056 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3632 0.5138 -0.8901 35 1 0.2147 2.3197 -0.0014 36 1 1.3342 4.5115 -0.0008 37 1 4.9401 4.9451 -0.5272 38 1 3.3521 5.7492 -0.5241 39 1 4.2801 3.6662 2.5062 40 1 5.7421 3.9979 1.5267 41 1 7.9811 7.3073 4.3515 42 1 7.1495 6.0219 5.2596 43 1 9.5089 5.6616 5.1664 44 1 5.8904 6.5710 0.6832 45 1 4.5050 7.5660 1.2254 46 1 5.1386 2.5840 0.0024 47 1 5.9072 0.8501 -0.8869 48 1 5.9059 0.8507 0.8931 49 1 5.9549 -1.6288 0.8932 50 1 5.9562 -1.6287 -0.8867 51 1 8.6137 -4.0171 0.0041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367838137.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:57 Heat of formation + Delta-G solvation = -62.926489 kcal Electronic energy + Delta-G solvation = -30582.812401 eV Core-core repulsion = 26448.944173 eV Total energy + Delta-G solvation = -4133.868228 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.62728 -40.00697 -38.13381 -37.39330 -36.66959 -34.52404 -33.31913 -30.93550 -30.52109 -29.41347 -28.58408 -28.06911 -27.03800 -25.30165 -24.82490 -22.43338 -22.26278 -21.01298 -20.67919 -20.43264 -20.25277 -18.16903 -17.57337 -16.93459 -16.51344 -16.37238 -15.90956 -15.79478 -15.32502 -14.96165 -14.81975 -14.73567 -14.56493 -14.41967 -14.39202 -13.86405 -13.65483 -13.26899 -12.85298 -12.74623 -12.56472 -12.32219 -12.26807 -12.08006 -11.66653 -11.58883 -11.47866 -11.30084 -11.22717 -11.02830 -10.91617 -10.80354 -10.71136 -10.66691 -10.50673 -10.20737 -9.87743 -9.80129 -9.61601 -9.23523 -8.67579 -8.45430 -8.40455 -7.47053 -6.05843 -4.10184 1.40071 1.62143 3.22511 3.29789 3.36771 3.40905 3.43802 3.60127 3.82218 3.83751 4.14430 4.34520 4.44690 4.55905 4.69295 4.82110 4.88913 4.93327 4.98076 5.04421 5.08406 5.12184 5.18586 5.22526 5.26600 5.29056 5.30642 5.33885 5.43513 5.47712 5.50784 5.57753 5.61575 5.73685 5.86325 5.86580 5.94906 6.05413 6.07501 6.09108 6.29226 6.36213 6.60106 6.64354 6.75097 6.82709 6.87328 7.35294 7.37991 7.60355 7.70298 7.88034 8.13884 8.28970 8.95618 9.53969 11.05773 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.005438 B = 0.004029 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5147.855335 B = 6947.840383 C =11414.591227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.091 3.909 4 C -0.176 4.176 5 C -0.108 4.108 6 C -0.083 4.083 7 C 0.088 3.912 8 N -0.503 5.503 9 C 0.062 3.938 10 C -0.152 4.152 11 H 0.118 0.882 12 C -0.123 4.123 13 H 0.110 0.890 14 C 0.109 3.891 15 O -0.568 6.568 16 C -0.156 4.156 17 H 0.118 0.882 18 C 0.060 3.940 19 C -0.172 4.172 20 C 0.120 3.880 21 O -0.304 6.304 22 C 0.065 3.935 23 C 0.026 3.974 24 C -0.524 4.524 25 H 0.058 0.942 26 C 0.061 3.939 27 N -0.889 5.889 28 Si 0.897 3.103 29 H -0.272 1.272 30 H -0.282 1.282 31 H -0.283 1.283 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.381 0.619 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.133 0.867 47 H 0.048 0.952 48 H 0.049 0.951 49 H 0.028 0.972 50 H 0.028 0.972 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.185 21.690 5.271 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.216 6.216 3 C 0.045 3.955 4 C -0.195 4.195 5 C -0.127 4.127 6 C -0.084 4.084 7 C -0.039 4.039 8 N -0.227 5.227 9 C -0.066 4.066 10 C -0.171 4.171 11 H 0.136 0.864 12 C -0.141 4.141 13 H 0.128 0.872 14 C 0.032 3.968 15 O -0.374 6.374 16 C -0.175 4.175 17 H 0.136 0.864 18 C -0.068 4.068 19 C -0.191 4.191 20 C 0.073 3.927 21 O -0.217 6.217 22 C -0.009 4.009 23 C -0.011 4.011 24 C -0.563 4.563 25 H 0.076 0.924 26 C -0.141 4.141 27 N -0.527 5.527 28 Si 0.724 3.276 29 H -0.196 1.196 30 H -0.208 1.208 31 H -0.209 1.209 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.228 0.772 44 H 0.066 0.934 45 H 0.105 0.895 46 H 0.151 0.849 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.046 0.954 50 H 0.046 0.954 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.905 20.965 4.909 24.604 hybrid contribution 1.859 0.369 0.194 1.905 sum -10.046 21.334 5.104 24.127 Atomic orbital electron populations 1.23015 0.79238 1.03715 1.00760 1.86245 1.20412 1.25979 1.88974 1.18351 0.89421 0.85089 1.02620 1.20950 0.99509 0.91541 1.07458 1.20531 0.93497 0.96685 1.02011 1.19280 0.93482 0.93420 1.02188 1.21146 0.99297 0.93829 0.89611 1.65718 1.41635 1.03668 1.11635 1.22665 0.96331 0.94445 0.93118 1.23604 0.98837 0.94620 0.99996 0.86438 1.22365 0.89457 1.02487 0.99839 0.87211 1.21568 0.85572 0.94012 0.95687 1.86535 1.33565 1.67194 1.50060 1.23422 1.00197 0.96065 0.97852 0.86437 1.22648 0.94913 0.94966 0.94250 1.21048 1.00426 0.90731 1.06918 1.18395 0.88503 0.86989 0.98838 1.86285 1.20915 1.27247 1.87278 1.23319 0.74965 1.03245 0.99346 1.19107 0.94156 0.88893 0.98914 1.21006 0.90332 0.92918 1.52001 0.92380 1.24976 0.99065 0.95126 0.94954 1.69990 1.35286 0.97580 1.49876 0.86460 0.85100 0.78327 0.77694 1.19613 1.20818 1.20871 0.88435 0.93032 0.93044 0.85224 0.85958 0.93639 0.89611 0.89192 0.93059 0.93091 0.93309 0.77207 0.93413 0.89455 0.84909 0.93387 0.93315 0.95366 0.95392 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.30 -5.05 10.28 -34.22 -0.35 -5.40 16 3 C 0.09 1.51 6.70 -39.12 -0.26 1.24 16 4 C -0.18 -2.30 9.04 -39.46 -0.36 -2.66 16 5 C -0.11 -1.35 9.69 -39.57 -0.38 -1.73 16 6 C -0.08 -1.11 4.67 -104.61 -0.49 -1.60 16 7 C 0.09 0.99 5.21 -4.97 -0.03 0.97 16 8 N -0.50 -5.67 5.48 -231.41 -1.27 -6.94 16 9 C 0.06 0.77 4.75 -2.18 -0.01 0.76 16 10 C -0.15 -1.66 6.74 -89.24 -0.60 -2.26 16 11 H 0.12 1.21 8.12 -51.93 -0.42 0.79 16 12 C -0.12 -1.28 5.60 -90.61 -0.51 -1.79 16 13 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 14 C 0.11 0.96 7.32 37.15 0.27 1.23 16 15 O -0.57 -5.95 13.66 -35.23 -0.48 -6.43 16 16 C -0.16 -1.43 6.84 -89.23 -0.61 -2.04 16 17 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 18 C 0.06 0.56 6.30 -2.18 -0.01 0.55 16 19 C -0.17 -2.74 7.35 -39.46 -0.29 -3.03 16 20 C 0.12 2.22 6.70 -39.12 -0.26 1.96 16 21 O -0.30 -6.71 9.92 -34.21 -0.34 -7.05 16 22 C 0.07 1.46 4.68 37.16 0.17 1.64 16 23 C 0.03 0.72 5.34 -27.89 -0.15 0.57 16 24 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 25 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 26 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 27 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 28 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 29 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 30 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 31 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 34 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 35 H 0.13 1.32 6.30 -52.49 -0.33 0.99 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.05 0.52 7.82 -51.93 -0.41 0.11 16 38 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 39 H 0.09 1.25 7.73 -51.93 -0.40 0.85 16 40 H 0.05 0.71 7.10 -51.93 -0.37 0.34 16 41 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.05 0.37 7.94 -51.93 -0.41 -0.04 16 43 H 0.38 2.08 9.12 45.56 0.42 2.50 16 44 H 0.05 0.46 7.82 -51.93 -0.41 0.05 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.13 2.14 5.61 -52.49 -0.29 1.84 16 47 H 0.05 1.02 7.66 -51.93 -0.40 0.62 16 48 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 49 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 412.18 15.07 6.21 6.21 Total: -1.00 -34.22 412.18 -11.01 -45.23 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.56 Total: 2.42 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -2.93 Total: -18.52 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: -0.53 Total: -33.17 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -1.17 Total: -18.89 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.22 -11.01 -45.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367838137.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.694 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds