Wall clock time and date at job start Wed Apr 1 2020 05:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35992 * 116.99677 * 2 1 4 4 C 1.38563 * 120.07805 * 359.97438 * 3 2 1 5 5 C 1.38243 * 119.99976 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.14586 * 0.27718 * 5 4 3 7 7 C 1.50704 * 119.92489 * 179.72109 * 6 5 4 8 8 N 1.46900 * 109.46779 * 89.99848 * 7 6 5 9 9 C 1.48564 * 110.99766 * 54.58673 * 8 7 6 10 10 C 1.54374 * 104.59218 * 159.03927 * 9 8 7 11 11 H 1.08999 * 118.15980 * 115.85118 * 10 9 8 12 12 C 1.53009 * 118.12752 * 272.76061 * 10 9 8 13 13 H 1.09005 * 117.43785 * 344.03170 * 12 10 9 14 14 C 1.52994 * 117.44500 * 199.31612 * 12 10 9 15 15 O 1.42901 * 109.46861 * 115.77791 * 14 12 10 16 16 C 1.53009 * 60.54228 * 91.67129 * 12 10 9 17 17 H 1.08998 * 120.22824 * 111.45181 * 16 12 10 18 18 C 1.48562 * 110.99545 * 169.99735 * 8 7 6 19 19 C 1.38237 * 120.14647 * 359.44595 * 6 5 4 20 20 C 1.38566 * 120.00165 * 0.55565 * 19 6 5 21 21 O 1.35990 * 120.07609 * 179.74870 * 20 19 6 22 22 C 1.42903 * 117.00015 * 359.97189 * 21 20 19 23 23 C 1.52997 * 109.47143 * 180.02562 * 22 21 20 24 24 C 1.50699 * 109.47295 * 180.02562 * 23 22 21 25 25 H 1.07999 * 119.99550 * 359.97438 * 24 23 22 26 26 C 1.37876 * 120.00084 * 180.02562 * 24 23 22 27 27 N 1.31511 * 120.00211 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 119.99776 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47221 * 359.97438 * 28 26 24 30 30 H 1.48501 * 109.47076 * 120.00233 * 28 26 24 31 31 H 1.48502 * 109.47324 * 239.99761 * 28 26 24 32 32 H 1.09001 * 109.47105 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47212 * 300.00645 * 1 2 3 34 34 H 1.09005 * 109.46487 * 60.00623 * 1 2 3 35 35 H 1.07997 * 119.99922 * 359.97438 * 4 3 2 36 36 H 1.08002 * 119.92283 * 179.97438 * 5 4 3 37 37 H 1.08992 * 109.46974 * 210.00057 * 7 6 5 38 38 H 1.09004 * 109.46882 * 330.00148 * 7 6 5 39 39 H 1.09004 * 110.40373 * 277.81237 * 9 8 7 40 40 H 1.08998 * 110.41370 * 40.25199 * 9 8 7 41 41 H 1.09006 * 109.46957 * 235.77473 * 14 12 10 42 42 H 1.08995 * 109.47036 * 355.77372 * 14 12 10 43 43 H 0.96702 * 113.99645 * 180.02562 * 15 14 12 44 44 H 1.08998 * 110.41522 * 319.74099 * 18 8 7 45 45 H 1.09001 * 110.40624 * 82.06479 * 18 8 7 46 46 H 1.07999 * 120.00087 * 180.27427 * 19 6 5 47 47 H 1.09001 * 109.46853 * 300.00261 * 22 21 20 48 48 H 1.08999 * 109.46861 * 60.00423 * 22 21 20 49 49 H 1.09007 * 109.47208 * 300.00232 * 23 22 21 50 50 H 1.08995 * 109.47243 * 59.99554 * 23 22 21 51 51 H 0.97000 * 119.99874 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9224 3.6057 0.0000 6 6 3.3030 3.6798 -0.0047 7 6 3.9837 5.0243 -0.0105 8 7 4.2094 5.4648 1.3727 9 6 4.9582 4.4384 2.1427 10 6 5.5752 5.2138 3.3265 11 1 5.2494 4.9579 4.3347 12 6 6.9368 5.8807 3.1206 13 1 7.5259 5.5646 2.2598 14 6 7.7401 6.2444 4.3709 15 8 8.9486 5.4823 4.3989 16 6 5.6595 6.6774 2.8466 17 1 5.3830 7.5103 3.4930 18 6 5.0863 6.6633 1.4133 19 6 4.0603 2.5233 0.0016 20 6 3.4360 1.2863 0.0010 21 8 4.1795 0.1477 0.0020 22 6 5.6003 0.3006 0.0031 23 6 6.2618 -1.0790 0.0035 24 6 7.7601 -0.9177 0.0052 25 1 8.1969 0.0701 0.0055 26 6 8.5734 -2.0311 0.0053 27 7 8.0415 -3.2338 0.0044 28 14 10.4306 -1.8311 0.0067 29 1 10.7729 -0.3860 0.0069 30 1 10.9969 -2.4746 1.2193 31 1 10.9987 -2.4736 -1.2056 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3632 0.5138 -0.8901 35 1 0.2147 2.3197 -0.0014 36 1 1.3342 4.5115 -0.0008 37 1 4.9401 4.9451 -0.5272 38 1 3.3521 5.7492 -0.5241 39 1 4.2801 3.6662 2.5062 40 1 5.7421 3.9979 1.5267 41 1 7.9811 7.3073 4.3515 42 1 7.1495 6.0219 5.2596 43 1 9.5089 5.6616 5.1664 44 1 5.8904 6.5710 0.6832 45 1 4.5050 7.5660 1.2254 46 1 5.1386 2.5840 0.0024 47 1 5.9072 0.8501 -0.8869 48 1 5.9059 0.8507 0.8931 49 1 5.9549 -1.6288 0.8932 50 1 5.9562 -1.6287 -0.8867 51 1 8.6137 -4.0171 0.0041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367838137.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:56 Heat of formation + Delta-G solvation = -87.255144 kcal Electronic energy + Delta-G solvation = -30583.867371 eV Core-core repulsion = 26448.944173 eV Total energy + Delta-G solvation = -4134.923198 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.71405 -40.98721 -39.49795 -38.46397 -37.55222 -35.61372 -35.30817 -32.58314 -31.73781 -30.87334 -29.47881 -28.96621 -27.91196 -27.08541 -25.94397 -23.99494 -23.29532 -22.32050 -21.83607 -21.43317 -21.15537 -19.44442 -18.66137 -18.29833 -17.71893 -17.61606 -17.32751 -17.09832 -16.56337 -16.36260 -16.16956 -15.78499 -15.59983 -15.47725 -15.26514 -15.09403 -14.57498 -14.37630 -14.27667 -14.21964 -13.91090 -13.48786 -13.43232 -13.17953 -13.08119 -12.82573 -12.70992 -12.54976 -12.51867 -12.40037 -12.09427 -12.05537 -11.95117 -11.82979 -11.63150 -11.61847 -11.41922 -11.41098 -11.02632 -10.65543 -10.58880 -9.71353 -9.49223 -8.73759 -8.29205 -6.43378 0.25930 0.43754 1.37785 1.39256 1.52861 2.24025 2.40347 2.45370 2.48251 2.61225 2.96811 3.04781 3.25979 3.54208 3.72271 3.79412 3.82063 4.00952 4.08453 4.12884 4.18654 4.19679 4.21098 4.25069 4.33434 4.37983 4.40772 4.42566 4.44381 4.49139 4.54078 4.58783 4.64900 4.68401 4.70390 4.73743 4.83125 4.89863 5.01625 5.12346 5.17354 5.25613 5.26641 5.28593 5.42173 5.55583 5.64232 5.71746 5.78450 5.94229 6.02600 6.22131 6.68516 6.71565 6.90646 7.26750 8.84373 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.005438 B = 0.004029 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5147.855335 B = 6947.840383 C =11414.591227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.077 3.923 4 C -0.165 4.165 5 C -0.092 4.092 6 C -0.084 4.084 7 C 0.090 3.910 8 N -0.500 5.500 9 C 0.063 3.937 10 C -0.171 4.171 11 H 0.122 0.878 12 C -0.132 4.132 13 H 0.084 0.916 14 C 0.109 3.891 15 O -0.599 6.599 16 C -0.131 4.131 17 H 0.145 0.855 18 C 0.056 3.944 19 C -0.172 4.172 20 C 0.069 3.931 21 O -0.335 6.335 22 C 0.088 3.912 23 C 0.032 3.968 24 C -0.546 4.546 25 H 0.067 0.933 26 C 0.004 3.996 27 N -0.930 5.930 28 Si 0.976 3.024 29 H -0.260 1.260 30 H -0.274 1.274 31 H -0.274 1.274 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.166 0.834 36 H 0.161 0.839 37 H 0.039 0.961 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.027 0.973 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.400 0.600 44 H 0.043 0.957 45 H 0.113 0.887 46 H 0.120 0.880 47 H 0.055 0.945 48 H 0.052 0.948 49 H -0.004 1.004 50 H -0.003 1.003 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.109 25.538 5.678 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.031 3.969 4 C -0.183 4.183 5 C -0.111 4.111 6 C -0.084 4.084 7 C -0.037 4.037 8 N -0.224 5.224 9 C -0.065 4.065 10 C -0.190 4.190 11 H 0.140 0.860 12 C -0.151 4.151 13 H 0.102 0.898 14 C 0.032 3.968 15 O -0.408 6.408 16 C -0.150 4.150 17 H 0.162 0.838 18 C -0.071 4.071 19 C -0.192 4.192 20 C 0.024 3.976 21 O -0.250 6.250 22 C 0.014 3.986 23 C -0.005 4.005 24 C -0.584 4.584 25 H 0.085 0.915 26 C -0.195 4.195 27 N -0.569 5.569 28 Si 0.799 3.201 29 H -0.184 1.184 30 H -0.200 1.200 31 H -0.199 1.199 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.184 0.816 36 H 0.178 0.822 37 H 0.057 0.943 38 H 0.133 0.867 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.250 0.750 44 H 0.062 0.938 45 H 0.131 0.869 46 H 0.138 0.862 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.015 0.985 50 H 0.016 0.984 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.850 24.842 5.325 28.471 hybrid contribution 1.980 -0.793 0.065 2.134 sum -10.870 24.049 5.390 26.936 Atomic orbital electron populations 1.23357 0.76378 1.05300 1.02556 1.86189 1.23565 1.26708 1.89180 1.18639 0.88899 0.86359 1.02969 1.21350 1.01070 0.90345 1.05540 1.21011 0.93134 0.97836 0.99096 1.19558 0.94201 0.93444 1.01227 1.21216 0.99409 0.93192 0.89890 1.65754 1.41679 1.03674 1.11317 1.22520 0.95403 0.94741 0.93799 1.23589 0.99738 0.96107 0.99548 0.85961 1.22409 0.89566 1.03174 0.99972 0.89807 1.21667 0.85024 0.95007 0.95084 1.86480 1.34587 1.68072 1.51656 1.23553 0.98240 0.95374 0.97793 0.83768 1.22799 0.94997 0.94918 0.94409 1.21041 1.00074 0.91076 1.06972 1.18846 0.89470 0.86575 1.02722 1.86177 1.20152 1.29835 1.88829 1.22787 0.76038 1.00020 0.99776 1.18925 0.94755 0.90985 0.95859 1.21377 0.91031 0.93619 1.52336 0.91481 1.26028 1.04901 0.94536 0.94011 1.70131 1.37603 0.98640 1.50503 0.85247 0.77878 0.78902 0.78107 1.18408 1.19961 1.19885 0.87240 0.91174 0.91039 0.81633 0.82154 0.94286 0.86715 0.91290 0.95469 0.90750 0.92090 0.74994 0.93841 0.86866 0.86196 0.92711 0.92955 0.98528 0.98414 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.34 -11.68 10.28 -79.60 -0.82 -12.50 16 3 C 0.08 2.58 6.70 22.57 0.15 2.73 16 4 C -0.16 -3.92 9.04 22.35 0.20 -3.72 16 5 C -0.09 -2.00 9.69 22.27 0.22 -1.78 16 6 C -0.08 -2.14 4.67 -19.86 -0.09 -2.23 16 7 C 0.09 1.85 5.21 85.56 0.45 2.29 16 8 N -0.50 -10.38 5.48 -886.04 -4.86 -15.24 16 9 C 0.06 1.62 4.75 86.45 0.41 2.03 16 10 C -0.17 -3.65 6.74 -9.90 -0.07 -3.72 16 11 H 0.12 2.45 8.12 -2.39 -0.02 2.43 16 12 C -0.13 -2.68 5.60 -10.79 -0.06 -2.74 16 13 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 14 C 0.11 1.74 7.32 71.98 0.53 2.27 16 15 O -0.60 -12.15 13.66 -148.98 -2.04 -14.18 16 16 C -0.13 -2.08 6.84 -9.90 -0.07 -2.15 16 17 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 18 C 0.06 0.91 6.30 86.45 0.54 1.45 16 19 C -0.17 -5.74 7.35 22.35 0.16 -5.57 16 20 C 0.07 2.72 6.70 22.57 0.15 2.87 16 21 O -0.34 -16.06 9.92 -79.57 -0.79 -16.85 16 22 C 0.09 4.27 4.68 71.98 0.34 4.61 16 23 C 0.03 1.87 5.34 29.85 0.16 2.03 16 24 C -0.55 -32.49 9.11 25.60 0.23 -32.25 16 25 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 26 C 0.00 0.23 5.46 84.65 0.46 0.69 16 27 N -0.93 -58.46 13.29 21.45 0.28 -58.18 16 28 Si 0.98 45.25 29.54 68.60 2.03 47.28 16 29 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 30 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 31 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 32 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 34 H 0.07 1.13 7.66 -2.38 -0.02 1.11 16 35 H 0.17 2.68 6.30 -2.91 -0.02 2.67 16 36 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 37 H 0.04 0.86 7.82 -2.39 -0.02 0.84 16 38 H 0.11 1.72 8.08 -2.38 -0.02 1.70 16 39 H 0.07 2.01 7.73 -2.39 -0.02 2.00 16 40 H 0.03 0.81 7.10 -2.39 -0.02 0.79 16 41 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.06 0.82 7.94 -2.39 -0.02 0.80 16 43 H 0.40 3.98 9.12 -74.06 -0.68 3.30 16 44 H 0.04 0.77 7.82 -2.39 -0.02 0.75 16 45 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.12 4.18 5.61 -2.91 -0.02 4.17 16 47 H 0.05 2.51 7.66 -2.39 -0.02 2.49 16 48 H 0.05 2.43 7.66 -2.39 -0.02 2.41 16 49 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 50 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 51 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -79.59 412.18 -1.10 -80.69 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.25 Total: 20.70 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 4.83 Total: -31.72 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -4.57 Total: -73.42 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -3.64 Total: -43.53 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -79.59 -1.10 -80.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367838137.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.564 kcal (2) G-P(sol) polarization free energy of solvation -79.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds