Wall clock time and date at job start Wed Apr 1 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99807 * 2 1 4 4 C 1.53005 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.32730 * 55.34155 * 4 3 2 6 6 C 1.47088 * 109.32962 * 174.99998 * 4 3 2 7 7 C 1.52570 * 114.32708 * 183.06703 * 6 4 3 8 8 C 1.50880 * 109.35006 * 274.97641 * 7 6 4 9 9 C 1.53949 * 110.09225 * 91.89276 * 8 7 6 10 10 N 1.47612 * 112.14137 * 319.42791 * 9 8 7 11 11 C 1.34773 * 118.63803 * 137.86761 * 10 9 8 12 12 O 1.21282 * 119.99832 * 179.97438 * 11 10 9 13 13 C 1.50700 * 120.00350 * 0.02562 * 11 10 9 14 14 C 1.50697 * 109.47171 * 179.97438 * 13 11 10 15 15 C 1.38326 * 119.97040 * 89.99327 * 14 13 11 16 16 C 1.38273 * 120.14156 * 179.72559 * 15 14 13 17 17 C 1.38120 * 120.06852 * 0.27615 * 16 15 14 18 18 C 1.38862 * 119.93189 * 0.02562 * 17 16 15 19 19 O 1.35754 * 120.06994 * 179.97438 * 18 17 16 20 20 C 1.34828 * 116.99877 * 354.46583 * 19 18 17 21 21 H 1.08000 * 120.00232 * 5.05258 * 20 19 18 22 22 C 1.38656 * 119.99622 * 185.05787 * 20 19 18 23 23 N 1.31556 * 120.00227 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99818 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47193 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46645 * 119.99944 * 24 22 20 27 27 H 1.48498 * 109.47256 * 239.99929 * 24 22 20 28 28 C 1.38083 * 119.96259 * 270.27260 * 14 13 11 29 29 C 1.44577 * 122.71135 * 318.15058 * 10 9 8 30 30 H 1.08997 * 109.47469 * 300.00371 * 1 2 3 31 31 H 1.09005 * 109.47080 * 60.00538 * 1 2 3 32 32 H 1.08995 * 109.47367 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47269 * 59.99990 * 3 2 1 34 34 H 1.08997 * 109.46924 * 299.99482 * 3 2 1 35 35 H 1.09004 * 108.51445 * 61.81012 * 6 4 3 36 36 H 1.09003 * 108.38914 * 304.22698 * 6 4 3 37 37 H 1.09005 * 109.48530 * 155.01847 * 7 6 4 38 38 H 1.08994 * 109.50995 * 34.95548 * 7 6 4 39 39 H 1.08990 * 109.37178 * 331.69376 * 8 7 6 40 40 H 1.09009 * 109.26313 * 212.01202 * 8 7 6 41 41 H 1.09004 * 108.94446 * 198.74864 * 9 8 7 42 42 H 1.08995 * 108.95115 * 80.12330 * 9 8 7 43 43 H 1.08997 * 109.47211 * 59.99470 * 13 11 10 44 44 H 1.08996 * 109.46572 * 299.99254 * 13 11 10 45 45 H 1.08001 * 119.92395 * 0.02562 * 15 14 13 46 46 H 1.07999 * 119.96892 * 180.29878 * 16 15 14 47 47 H 1.08004 * 120.03603 * 179.97438 * 17 16 15 48 48 H 0.97000 * 120.00401 * 179.97438 * 23 22 20 49 49 H 1.07998 * 120.03425 * 359.97438 * 28 14 13 50 50 H 1.09003 * 109.44732 * 210.48167 * 29 10 9 51 51 H 1.08999 * 109.45078 * 330.40212 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8492 0.5730 -0.8451 6 6 4.1300 2.5246 -0.1203 7 6 5.6533 2.5309 -0.2054 8 6 6.2320 2.5024 1.1877 9 6 6.4832 1.0483 1.6264 10 7 5.3911 0.1457 1.2123 11 6 5.7081 -1.0669 0.7170 12 8 4.8304 -1.8284 0.3696 13 6 7.1531 -1.4772 0.5958 14 6 7.2340 -2.8671 0.0190 15 6 7.3092 -3.0434 -1.3509 16 6 7.3892 -4.3168 -1.8837 17 6 7.3887 -5.4174 -1.0492 18 6 7.3070 -5.2441 0.3261 19 8 7.3057 -6.3239 1.1489 20 6 7.2701 -7.5385 0.5647 21 1 7.3266 -7.6225 -0.5105 22 6 7.1608 -8.6798 1.3445 23 7 7.0923 -8.5776 2.6543 24 14 7.1107 -10.3626 0.5351 25 1 7.2039 -10.2061 -0.9386 26 1 8.2532 -11.1787 1.0190 27 1 5.8360 -11.0409 0.8818 28 6 7.2272 -3.9635 0.8583 29 6 3.9957 0.5112 1.3106 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8292 3.1161 0.7444 36 1 3.7313 2.9980 -1.0176 37 1 5.9851 3.4335 -0.7187 38 1 5.9907 1.6537 -0.7574 39 1 5.5332 2.9731 1.8791 40 1 7.1742 3.0506 1.1970 41 1 6.5755 1.0172 2.7121 42 1 7.4166 0.7012 1.1835 43 1 7.6179 -1.4657 1.5816 44 1 7.6748 -0.7803 -0.0601 45 1 7.3102 -2.1843 -2.0054 46 1 7.4527 -4.4511 -2.9534 47 1 7.4508 -6.4119 -1.4659 48 1 7.0154 -9.3760 3.1998 49 1 7.1644 -3.8254 1.9276 50 1 3.3975 -0.3836 1.4828 51 1 3.8595 1.2038 2.1411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375122773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:39 Heat of formation + Delta-G solvation = -87.131098 kcal Electronic energy + Delta-G solvation = -30944.163721 eV Core-core repulsion = 26809.245902 eV Total energy + Delta-G solvation = -4134.917819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.55879 -38.99911 -38.29704 -37.30336 -36.30124 -34.35219 -33.18381 -32.27772 -31.83052 -29.15057 -28.29532 -27.76742 -26.38202 -25.65784 -25.01327 -24.11584 -21.74066 -21.46619 -20.84869 -20.48488 -18.80793 -17.50346 -17.16356 -16.91600 -16.61650 -16.48505 -16.08769 -15.39377 -15.14869 -14.88964 -14.64780 -14.50656 -14.29619 -14.11822 -13.91422 -13.50351 -13.47253 -13.30185 -13.08782 -12.90296 -12.50715 -12.46512 -12.28165 -12.09975 -11.71465 -11.62530 -11.44493 -11.42579 -11.21163 -11.16393 -10.98096 -10.83092 -10.75798 -10.68306 -10.62307 -10.50249 -10.34963 -9.84904 -9.50869 -9.23125 -8.74953 -8.58596 -7.94806 -7.10809 -6.35218 -3.93883 2.20761 2.50256 2.88249 3.08033 3.18753 3.20565 3.25648 3.56458 4.04663 4.33402 4.48225 4.53963 4.58852 4.69082 4.80581 4.93364 4.98776 5.01119 5.08522 5.12502 5.17623 5.21504 5.22174 5.27402 5.32633 5.35042 5.41792 5.51401 5.53490 5.57740 5.61873 5.68626 5.76223 5.77086 5.82277 5.85336 5.94597 6.03584 6.07331 6.15400 6.28427 6.44741 6.67986 6.77174 7.01874 7.02742 7.17707 7.38015 7.41161 7.47728 7.54670 7.93910 8.10304 8.44631 9.10848 9.82705 10.83374 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.002450 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.499702 B =11425.336549 C =12425.452326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.070 3.930 4 C -0.102 4.102 5 H 0.083 0.917 6 C -0.111 4.111 7 C -0.114 4.114 8 C -0.132 4.132 9 C 0.105 3.895 10 N -0.615 5.615 11 C 0.508 3.492 12 O -0.507 6.507 13 C -0.094 4.094 14 C -0.032 4.032 15 C -0.195 4.195 16 C -0.075 4.075 17 C -0.231 4.231 18 C 0.155 3.845 19 O -0.181 6.181 20 C -0.389 4.389 21 H 0.091 0.909 22 C 0.038 3.962 23 N -0.865 5.865 24 Si 0.940 3.060 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.276 1.276 28 C -0.173 4.173 29 C 0.127 3.873 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.126 0.874 48 H 0.268 0.732 49 H 0.113 0.887 50 H 0.093 0.907 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.054 26.123 -3.873 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.008 4.008 4 C -0.122 4.122 5 H 0.102 0.898 6 C -0.149 4.149 7 C -0.152 4.152 8 C -0.170 4.170 9 C -0.018 4.018 10 N -0.350 5.350 11 C 0.296 3.704 12 O -0.379 6.379 13 C -0.133 4.133 14 C -0.033 4.033 15 C -0.214 4.214 16 C -0.093 4.093 17 C -0.250 4.250 18 C 0.102 3.898 19 O -0.085 6.085 20 C -0.465 4.465 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.501 5.501 24 Si 0.765 3.235 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.192 4.192 29 C 0.004 3.996 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.119 0.881 46 H 0.124 0.876 47 H 0.143 0.857 48 H 0.078 0.922 49 H 0.131 0.869 50 H 0.111 0.889 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.442 25.351 -3.594 26.176 hybrid contribution -0.321 -0.471 -0.457 0.731 sum -5.763 24.880 -4.051 25.858 Atomic orbital electron populations 1.22738 0.81299 1.02969 0.99502 1.88034 1.19325 1.27189 1.95244 1.22501 0.93298 0.85110 0.99842 1.20662 0.93131 0.97563 1.00872 0.89840 1.20426 0.95932 0.96454 1.02047 1.21017 0.94824 1.02329 0.96997 1.21783 1.01941 0.95942 0.97329 1.22010 0.90051 0.89906 0.99824 1.47729 1.06251 1.15781 1.65195 1.20809 0.91719 0.80891 0.76997 1.90790 1.50027 1.50938 1.46194 1.20656 0.93752 0.95983 1.02952 1.18690 0.99422 0.91889 0.93274 1.20325 1.11011 0.96387 0.93710 1.20663 0.98084 0.92382 0.98204 1.21166 1.11155 0.99315 0.93412 1.19267 0.92484 0.88467 0.89596 1.83976 1.79411 1.12209 1.32904 1.21360 1.52078 0.80192 0.92890 0.89113 1.25267 0.96702 0.99172 0.95453 1.70052 1.46471 1.29778 1.03775 0.85662 0.78167 0.80641 0.79032 1.19138 1.20236 1.20204 1.19935 1.10428 0.89786 0.99097 1.21215 0.81984 1.00879 0.95524 0.94291 0.94354 0.89474 0.93456 0.93381 0.92145 0.92353 0.91684 0.91342 0.91479 0.90538 0.91740 0.89700 0.88478 0.88629 0.88076 0.87560 0.85669 0.92218 0.86906 0.88885 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.85 10.03 -35.23 -0.35 -5.20 16 3 C 0.07 0.67 5.27 37.16 0.20 0.87 16 4 C -0.10 -1.05 2.31 -92.77 -0.21 -1.26 16 5 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 6 C -0.11 -0.82 4.38 -29.79 -0.13 -0.95 16 7 C -0.11 -0.79 5.51 -28.02 -0.15 -0.94 16 8 C -0.13 -0.78 5.71 -27.30 -0.16 -0.94 16 9 C 0.10 0.82 5.95 -2.94 -0.02 0.80 16 10 N -0.61 -7.16 2.25 -172.88 -0.39 -7.55 16 11 C 0.51 7.96 7.61 -10.99 -0.08 7.87 16 12 O -0.51 -10.57 15.47 5.56 0.09 -10.48 16 13 C -0.09 -1.33 4.15 -29.04 -0.12 -1.45 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.07 16 15 C -0.20 -3.69 9.70 -39.54 -0.38 -4.08 16 16 C -0.08 -1.50 10.04 -39.61 -0.40 -1.90 16 17 C -0.23 -5.41 9.17 -39.39 -0.36 -5.77 16 18 C 0.15 4.01 6.65 -39.10 -0.26 3.75 16 19 O -0.18 -5.44 9.76 0.04 0.00 -5.44 16 20 C -0.39 -11.36 9.49 30.89 0.29 -11.07 16 21 H 0.09 2.47 5.20 -52.49 -0.27 2.20 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.87 -26.27 13.67 55.48 0.76 -25.51 16 24 Si 0.94 21.35 29.55 -169.99 -5.02 16.33 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 C -0.17 -3.95 9.65 -39.39 -0.38 -4.33 16 29 C 0.13 1.46 4.64 -4.38 -0.02 1.44 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.06 0.38 7.36 -51.93 -0.38 0.00 16 36 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.60 7.48 -51.93 -0.39 0.21 16 39 H 0.07 0.37 7.32 -51.93 -0.38 -0.01 16 40 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.59 5.82 -51.93 -0.30 0.29 16 43 H 0.10 1.19 7.97 -51.93 -0.41 0.78 16 44 H 0.10 1.06 7.35 -51.93 -0.38 0.67 16 45 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 46 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 47 H 0.13 2.91 5.64 -52.48 -0.30 2.61 16 48 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16 50 H 0.09 1.39 6.68 -51.93 -0.35 1.05 16 51 H 0.07 0.62 8.06 -51.93 -0.42 0.20 16 LS Contribution 405.79 15.07 6.12 6.12 Total: -1.00 -36.27 405.79 -8.64 -44.92 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -8.21 Total: 3.47 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -1.63 Total: -16.65 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.37 Total: -33.06 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.27 Total: -21.12 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.27 -8.64 -44.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375122773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.216 kcal (2) G-P(sol) polarization free energy of solvation -36.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds