Wall clock time and date at job start Wed Apr 1 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99807 * 2 1 4 4 C 1.53005 * 109.46966 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.32730 * 55.34155 * 4 3 2 6 6 C 1.47088 * 109.32962 * 174.99998 * 4 3 2 7 7 C 1.52570 * 114.32708 * 183.06703 * 6 4 3 8 8 C 1.50880 * 109.35006 * 274.97641 * 7 6 4 9 9 C 1.53949 * 110.09225 * 91.89276 * 8 7 6 10 10 N 1.47612 * 112.14137 * 319.42791 * 9 8 7 11 11 C 1.34773 * 118.63803 * 137.86761 * 10 9 8 12 12 O 1.21282 * 119.99832 * 179.97438 * 11 10 9 13 13 C 1.50700 * 120.00350 * 0.02562 * 11 10 9 14 14 C 1.50697 * 109.47171 * 179.97438 * 13 11 10 15 15 C 1.38326 * 119.97040 * 89.99327 * 14 13 11 16 16 C 1.38273 * 120.14156 * 179.72559 * 15 14 13 17 17 C 1.38120 * 120.06852 * 0.27615 * 16 15 14 18 18 C 1.38862 * 119.93189 * 0.02562 * 17 16 15 19 19 O 1.35754 * 120.06994 * 179.97438 * 18 17 16 20 20 C 1.34828 * 116.99877 * 354.46583 * 19 18 17 21 21 H 1.08000 * 120.00232 * 5.05258 * 20 19 18 22 22 C 1.38656 * 119.99622 * 185.05787 * 20 19 18 23 23 N 1.31556 * 120.00227 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99818 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47193 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46645 * 119.99944 * 24 22 20 27 27 H 1.48498 * 109.47256 * 239.99929 * 24 22 20 28 28 C 1.38083 * 119.96259 * 270.27260 * 14 13 11 29 29 C 1.44577 * 122.71135 * 318.15058 * 10 9 8 30 30 H 1.08997 * 109.47469 * 300.00371 * 1 2 3 31 31 H 1.09005 * 109.47080 * 60.00538 * 1 2 3 32 32 H 1.08995 * 109.47367 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47269 * 59.99990 * 3 2 1 34 34 H 1.08997 * 109.46924 * 299.99482 * 3 2 1 35 35 H 1.09004 * 108.51445 * 61.81012 * 6 4 3 36 36 H 1.09003 * 108.38914 * 304.22698 * 6 4 3 37 37 H 1.09005 * 109.48530 * 155.01847 * 7 6 4 38 38 H 1.08994 * 109.50995 * 34.95548 * 7 6 4 39 39 H 1.08990 * 109.37178 * 331.69376 * 8 7 6 40 40 H 1.09009 * 109.26313 * 212.01202 * 8 7 6 41 41 H 1.09004 * 108.94446 * 198.74864 * 9 8 7 42 42 H 1.08995 * 108.95115 * 80.12330 * 9 8 7 43 43 H 1.08997 * 109.47211 * 59.99470 * 13 11 10 44 44 H 1.08996 * 109.46572 * 299.99254 * 13 11 10 45 45 H 1.08001 * 119.92395 * 0.02562 * 15 14 13 46 46 H 1.07999 * 119.96892 * 180.29878 * 16 15 14 47 47 H 1.08004 * 120.03603 * 179.97438 * 17 16 15 48 48 H 0.97000 * 120.00401 * 179.97438 * 23 22 20 49 49 H 1.07998 * 120.03425 * 359.97438 * 28 14 13 50 50 H 1.09003 * 109.44732 * 210.48167 * 29 10 9 51 51 H 1.08999 * 109.45078 * 330.40212 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8492 0.5730 -0.8451 6 6 4.1300 2.5246 -0.1203 7 6 5.6533 2.5309 -0.2054 8 6 6.2320 2.5024 1.1877 9 6 6.4832 1.0483 1.6264 10 7 5.3911 0.1457 1.2123 11 6 5.7081 -1.0669 0.7170 12 8 4.8304 -1.8284 0.3696 13 6 7.1531 -1.4772 0.5958 14 6 7.2340 -2.8671 0.0190 15 6 7.3092 -3.0434 -1.3509 16 6 7.3892 -4.3168 -1.8837 17 6 7.3887 -5.4174 -1.0492 18 6 7.3070 -5.2441 0.3261 19 8 7.3057 -6.3239 1.1489 20 6 7.2701 -7.5385 0.5647 21 1 7.3266 -7.6225 -0.5105 22 6 7.1608 -8.6798 1.3445 23 7 7.0923 -8.5776 2.6543 24 14 7.1107 -10.3626 0.5351 25 1 7.2039 -10.2061 -0.9386 26 1 8.2532 -11.1787 1.0190 27 1 5.8360 -11.0409 0.8818 28 6 7.2272 -3.9635 0.8583 29 6 3.9957 0.5112 1.3106 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8292 3.1161 0.7444 36 1 3.7313 2.9980 -1.0176 37 1 5.9851 3.4335 -0.7187 38 1 5.9907 1.6537 -0.7574 39 1 5.5332 2.9731 1.8791 40 1 7.1742 3.0506 1.1970 41 1 6.5755 1.0172 2.7121 42 1 7.4166 0.7012 1.1835 43 1 7.6179 -1.4657 1.5816 44 1 7.6748 -0.7803 -0.0601 45 1 7.3102 -2.1843 -2.0054 46 1 7.4527 -4.4511 -2.9534 47 1 7.4508 -6.4119 -1.4659 48 1 7.0154 -9.3760 3.1998 49 1 7.1644 -3.8254 1.9276 50 1 3.3975 -0.3836 1.4828 51 1 3.8595 1.2038 2.1411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375122773.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:38 Heat of formation + Delta-G solvation = -110.479749 kcal Electronic energy + Delta-G solvation = -30945.176194 eV Core-core repulsion = 26809.245902 eV Total energy + Delta-G solvation = -4135.930293 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.59952 -40.68547 -39.39442 -38.37276 -37.90718 -35.25662 -34.34506 -33.92399 -33.31877 -30.91662 -29.13439 -28.96854 -27.40703 -27.10650 -26.44165 -24.83557 -23.29992 -22.87373 -22.02698 -21.25669 -19.99917 -19.31985 -18.69937 -18.18032 -17.59762 -17.28066 -17.02786 -16.72462 -16.50918 -16.19403 -16.04487 -15.79752 -15.57790 -15.33274 -15.16277 -14.83272 -14.62309 -14.38172 -14.21994 -14.05752 -14.00124 -13.62508 -13.45296 -13.18387 -12.97564 -12.94457 -12.69408 -12.49576 -12.41655 -12.29166 -12.23136 -12.14962 -12.08191 -11.83459 -11.55992 -11.47670 -11.28202 -11.19666 -10.84730 -10.74020 -10.63695 -9.63198 -9.55027 -8.97862 -8.47414 -6.15935 0.52206 0.75406 1.33053 1.42367 1.52237 1.70247 2.09961 2.17643 2.83026 2.85315 3.14299 3.44250 3.63456 3.76011 3.83416 3.89140 4.05788 4.09130 4.12573 4.14591 4.29802 4.34473 4.37572 4.41743 4.46543 4.48749 4.54516 4.56435 4.58424 4.60809 4.66089 4.72799 4.79867 4.81458 4.88542 4.93812 5.05653 5.12218 5.12961 5.19273 5.28611 5.30299 5.32048 5.40647 5.48952 5.64526 5.72314 5.74986 5.79019 6.02712 6.22038 6.28581 6.42249 6.97134 7.30396 7.78890 8.76589 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.002450 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.499702 B =11425.336549 C =12425.452326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.422 6.422 3 C 0.066 3.934 4 C -0.092 4.092 5 H 0.045 0.955 6 C -0.110 4.110 7 C -0.115 4.115 8 C -0.125 4.125 9 C 0.093 3.907 10 N -0.602 5.602 11 C 0.504 3.496 12 O -0.574 6.574 13 C -0.090 4.090 14 C -0.024 4.024 15 C -0.181 4.181 16 C -0.073 4.073 17 C -0.247 4.247 18 C 0.113 3.887 19 O -0.235 6.235 20 C -0.414 4.414 21 H 0.100 0.900 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 1.021 2.979 25 H -0.252 1.252 26 H -0.264 1.264 27 H -0.269 1.269 28 C -0.192 4.192 29 C 0.126 3.874 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.119 0.881 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.118 0.882 48 H 0.272 0.728 49 H 0.104 0.896 50 H 0.049 0.951 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.327 29.931 -5.534 30.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.341 6.341 3 C -0.011 4.011 4 C -0.112 4.112 5 H 0.063 0.937 6 C -0.147 4.147 7 C -0.152 4.152 8 C -0.163 4.163 9 C -0.028 4.028 10 N -0.335 5.335 11 C 0.293 3.707 12 O -0.453 6.453 13 C -0.129 4.129 14 C -0.025 4.025 15 C -0.199 4.199 16 C -0.091 4.091 17 C -0.266 4.266 18 C 0.063 3.937 19 O -0.142 6.142 20 C -0.490 4.490 21 H 0.117 0.883 22 C -0.222 4.222 23 N -0.561 5.561 24 Si 0.840 3.160 25 H -0.175 1.175 26 H -0.189 1.189 27 H -0.194 1.194 28 C -0.212 4.212 29 C 0.002 3.998 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.137 0.863 44 H 0.158 0.842 45 H 0.162 0.838 46 H 0.163 0.837 47 H 0.136 0.864 48 H 0.082 0.918 49 H 0.122 0.878 50 H 0.067 0.933 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.690 29.269 -5.265 30.106 hybrid contribution -0.577 -1.292 -0.014 1.415 sum -5.267 27.977 -5.279 28.953 Atomic orbital electron populations 1.22864 0.79869 1.03136 1.01041 1.87993 1.21206 1.29365 1.95557 1.22677 0.92763 0.84225 1.01445 1.20586 0.93883 0.98447 0.98273 0.93678 1.20426 0.96442 0.94516 1.03330 1.21043 0.94270 1.02280 0.97635 1.21781 1.03428 0.94421 0.96655 1.22405 0.88986 0.90541 1.00864 1.47791 1.07397 1.15113 1.63186 1.21047 0.91565 0.81546 0.76574 1.90776 1.51692 1.53168 1.49652 1.20761 0.93567 0.93589 1.04961 1.19212 0.96499 0.93356 0.93434 1.20933 1.07492 0.97373 0.94108 1.21118 0.96415 0.91754 0.99827 1.21287 1.12052 1.00391 0.92875 1.19852 0.94409 0.88606 0.90818 1.83934 1.82239 1.13264 1.34739 1.21868 1.52709 0.80778 0.93628 0.88289 1.26627 0.95833 1.03642 0.96089 1.70198 1.48865 1.31312 1.05719 0.84511 0.78640 0.74336 0.78559 1.17537 1.18903 1.19423 1.20194 1.11368 0.90099 0.99495 1.21232 0.81401 0.99668 0.97455 0.92622 0.92829 0.90153 0.91379 0.91997 0.90196 0.91565 0.89884 0.93326 0.90550 0.88111 0.90414 0.88304 0.86312 0.84182 0.83810 0.83701 0.86412 0.91850 0.87769 0.93258 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.42 -11.07 10.03 -148.98 -1.49 -12.57 16 3 C 0.07 1.19 5.27 71.98 0.38 1.57 16 4 C -0.09 -1.79 2.31 -12.18 -0.03 -1.82 16 5 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 6 C -0.11 -1.27 4.38 28.61 0.13 -1.15 16 7 C -0.11 -1.15 5.51 29.76 0.16 -0.98 16 8 C -0.13 -0.89 5.71 30.23 0.17 -0.72 16 9 C 0.09 1.10 5.95 86.49 0.51 1.61 16 10 N -0.60 -13.09 2.25 -819.27 -1.84 -14.94 16 11 C 0.50 15.47 7.61 87.66 0.67 16.14 16 12 O -0.57 -24.87 15.47 -3.04 -0.05 -24.92 16 13 C -0.09 -2.33 4.15 29.10 0.12 -2.21 16 14 C -0.02 -0.91 4.37 -19.88 -0.09 -1.00 16 15 C -0.18 -6.37 9.70 22.30 0.22 -6.15 16 16 C -0.07 -2.82 10.04 22.25 0.22 -2.60 16 17 C -0.25 -11.90 9.17 22.39 0.21 -11.69 16 18 C 0.11 6.20 6.65 22.58 0.15 6.35 16 19 O -0.23 -15.20 9.76 -22.77 -0.22 -15.42 16 20 C -0.41 -25.68 9.49 67.92 0.64 -25.03 16 21 H 0.10 5.69 5.20 -2.91 -0.02 5.68 16 22 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 23 N -0.92 -59.25 13.67 21.61 0.30 -58.96 16 24 Si 1.02 45.20 29.55 68.60 2.03 47.23 16 25 H -0.25 -10.36 7.11 99.48 0.71 -9.66 16 26 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 C -0.19 -9.16 9.65 22.39 0.22 -8.94 16 29 C 0.13 2.81 4.64 87.18 0.40 3.21 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.93 8.09 -2.39 -0.02 0.91 16 35 H 0.08 0.66 7.36 -2.38 -0.02 0.64 16 36 H 0.07 0.69 8.06 -2.39 -0.02 0.67 16 37 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.05 0.70 7.48 -2.39 -0.02 0.68 16 39 H 0.08 0.46 7.32 -2.39 -0.02 0.44 16 40 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 41 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.10 0.91 5.82 -2.39 -0.01 0.90 16 43 H 0.12 2.61 7.97 -2.39 -0.02 2.59 16 44 H 0.14 2.41 7.35 -2.39 -0.02 2.39 16 45 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 46 H 0.15 4.43 8.06 -2.91 -0.02 4.40 16 47 H 0.12 5.71 5.64 -2.91 -0.02 5.70 16 48 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 49 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 50 H 0.05 1.56 6.68 -2.39 -0.02 1.54 16 51 H 0.10 1.55 8.06 -2.39 -0.02 1.54 16 Total: -1.00 -89.62 405.79 5.43 -84.19 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.92 Total: 28.07 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 5.80 Total: -32.70 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -1.55 Total: -73.89 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -1.76 Total: -52.90 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -89.62 5.43 -84.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375122773.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.289 kcal (2) G-P(sol) polarization free energy of solvation -89.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds