Wall clock time and date at job start Wed Apr 1 2020 05:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99736 * 2 1 4 4 C 1.52996 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.18475 * 305.43400 * 4 3 2 6 6 C 1.47097 * 109.32932 * 185.87122 * 4 3 2 7 7 C 1.52568 * 114.32347 * 176.94138 * 6 4 3 8 8 C 1.50882 * 109.36235 * 85.00929 * 7 6 4 9 9 C 1.53941 * 110.09393 * 268.11081 * 8 7 6 10 10 N 1.47610 * 112.14532 * 40.56595 * 9 8 7 11 11 C 1.34778 * 118.64201 * 222.10955 * 10 9 8 12 12 O 1.21279 * 119.99710 * 179.97438 * 11 10 9 13 13 C 1.50696 * 119.99951 * 359.97438 * 11 10 9 14 14 C 1.50705 * 109.46950 * 180.02562 * 13 11 10 15 15 C 1.38318 * 119.96549 * 269.72687 * 14 13 11 16 16 C 1.38286 * 120.13828 * 179.76425 * 15 14 13 17 17 C 1.38122 * 120.06439 * 0.51059 * 16 15 14 18 18 C 1.38853 * 119.93196 * 359.74398 * 17 16 15 19 19 O 1.35759 * 120.06679 * 179.97438 * 18 17 16 20 20 C 1.34831 * 117.00033 * 354.47965 * 19 18 17 21 21 H 1.08002 * 119.99719 * 5.06523 * 20 19 18 22 22 C 1.38654 * 119.99742 * 185.05797 * 20 19 18 23 23 N 1.31564 * 119.99431 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00320 * 0.02562 * 22 20 19 25 25 H 1.48492 * 109.47263 * 89.99537 * 24 22 20 26 26 H 1.48496 * 109.47161 * 210.00072 * 24 22 20 27 27 H 1.48503 * 109.46712 * 329.99854 * 24 22 20 28 28 C 1.38076 * 119.96211 * 89.99756 * 14 13 11 29 29 C 1.44579 * 122.70941 * 42.12790 * 10 9 8 30 30 H 1.08998 * 109.47139 * 60.00443 * 1 2 3 31 31 H 1.09001 * 109.47088 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47453 * 300.00080 * 1 2 3 33 33 H 1.09006 * 109.47121 * 59.99602 * 3 2 1 34 34 H 1.08998 * 109.47017 * 300.00067 * 3 2 1 35 35 H 1.09001 * 108.50909 * 298.19017 * 6 4 3 36 36 H 1.08997 * 108.51671 * 55.83803 * 6 4 3 37 37 H 1.09002 * 109.49250 * 325.04345 * 7 6 4 38 38 H 1.08996 * 109.48656 * 204.97288 * 7 6 4 39 39 H 1.08997 * 109.36591 * 147.91322 * 8 7 6 40 40 H 1.08999 * 109.36434 * 28.30077 * 8 7 6 41 41 H 1.09002 * 108.94558 * 161.24944 * 9 8 7 42 42 H 1.08995 * 108.95206 * 279.87277 * 9 8 7 43 43 H 1.08998 * 109.47402 * 300.00114 * 13 11 10 44 44 H 1.08997 * 109.47095 * 60.00526 * 13 11 10 45 45 H 1.07998 * 119.93195 * 359.97438 * 15 14 13 46 46 H 1.07991 * 119.96787 * 180.25318 * 16 15 14 47 47 H 1.08003 * 120.03254 * 179.76517 * 17 16 15 48 48 H 0.97002 * 119.99606 * 180.02562 * 23 22 20 49 49 H 1.08001 * 120.03842 * 359.96134 * 28 14 13 50 50 H 1.08996 * 109.45030 * 29.31596 * 29 10 9 51 51 H 1.08999 * 109.44883 * 149.26739 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8450 0.5616 0.8397 6 6 4.1296 2.5228 0.1426 7 6 5.6528 2.5278 0.2307 8 6 6.2344 2.5197 -1.1615 9 6 6.4864 1.0723 -1.6210 10 7 5.3935 0.1637 -1.2223 11 6 5.7095 -1.0564 -0.7446 12 8 4.8311 -1.8224 -0.4094 13 6 7.1542 -1.4685 -0.6271 14 6 7.2340 -2.8669 -0.0710 15 6 7.3125 -3.0634 1.2959 16 6 7.3809 -4.3452 1.8104 17 6 7.3816 -5.4332 0.9594 18 6 7.3082 -5.2390 -0.4135 19 8 7.3092 -6.3064 -1.2524 20 6 7.4986 -7.5207 -0.6978 21 1 7.5588 -7.6204 0.3759 22 6 7.6159 -8.6412 -1.5059 23 7 7.8002 -9.8261 -0.9647 24 14 7.5123 -8.4685 -3.3630 25 1 8.8708 -8.2344 -3.9150 26 1 6.9491 -9.7131 -3.9452 27 1 6.6344 -7.3206 -3.7051 28 6 7.2342 -3.9505 -0.9268 29 6 3.9981 0.5284 -1.3235 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8305 3.1270 -0.7139 36 1 3.7314 2.9844 1.0462 37 1 5.9888 1.6424 0.7703 38 1 5.9836 3.4227 0.7578 39 1 7.1760 3.0687 -1.1630 40 1 5.5368 3.0004 -1.8474 41 1 6.5810 1.0570 -2.7068 42 1 7.4189 0.7186 -1.1813 43 1 7.6208 -1.4424 -1.6118 44 1 7.6749 -0.7816 0.0401 45 1 7.3170 -2.2141 1.9631 46 1 7.4380 -4.4956 2.8782 47 1 7.4389 -6.4339 1.3616 48 1 7.8827 -10.6100 -1.5301 49 1 7.1766 -3.7963 -1.9942 50 1 3.8660 1.2338 -2.1438 51 1 3.4025 -0.3645 -1.5131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375122774.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:42 Heat of formation + Delta-G solvation = -107.385383 kcal Electronic energy + Delta-G solvation = -30980.534783 eV Core-core repulsion = 26844.738672 eV Total energy + Delta-G solvation = -4135.796111 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.59324 -40.79350 -39.40457 -38.43496 -37.94047 -35.24305 -34.48608 -33.92482 -33.35845 -31.10586 -29.16330 -28.96361 -27.31264 -27.09730 -26.44562 -24.82830 -23.39290 -22.76476 -21.96940 -21.24475 -19.95773 -19.54777 -18.75407 -18.16759 -17.58647 -17.27371 -17.03447 -16.86109 -16.61230 -16.17471 -15.98330 -15.71424 -15.63320 -15.36092 -15.12461 -14.90694 -14.61320 -14.42448 -14.23265 -14.15373 -14.03389 -13.94542 -13.47066 -13.17812 -13.02837 -12.95518 -12.70610 -12.50877 -12.46921 -12.38607 -12.29316 -12.14347 -11.94012 -11.82737 -11.55710 -11.47356 -11.32403 -11.26052 -10.92688 -10.75417 -10.63511 -9.66570 -9.53665 -9.07030 -8.50967 -6.23691 0.48515 0.69366 1.28607 1.33556 1.50506 1.71472 2.11210 2.27484 2.76361 2.85290 3.04361 3.11273 3.63725 3.73956 3.82577 3.87197 4.06009 4.06481 4.12834 4.15360 4.27411 4.35066 4.38065 4.41441 4.46798 4.48931 4.53996 4.55505 4.58705 4.61021 4.66306 4.68944 4.80407 4.81694 4.88376 4.92694 4.98153 5.12799 5.18535 5.24940 5.29157 5.32149 5.38527 5.41152 5.49404 5.64118 5.71648 5.75654 5.79827 5.90698 6.23464 6.28540 6.43438 6.83332 7.31501 7.58280 8.61036 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012866 B = 0.002523 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.752240 B =11096.940886 C =11780.996666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.421 6.421 3 C 0.065 3.935 4 C -0.092 4.092 5 H 0.044 0.956 6 C -0.110 4.110 7 C -0.115 4.115 8 C -0.126 4.126 9 C 0.093 3.907 10 N -0.602 5.602 11 C 0.504 3.496 12 O -0.574 6.574 13 C -0.089 4.089 14 C -0.026 4.026 15 C -0.172 4.172 16 C -0.077 4.077 17 C -0.241 4.241 18 C 0.120 3.880 19 O -0.247 6.247 20 C -0.400 4.400 21 H 0.079 0.921 22 C 0.010 3.990 23 N -0.924 5.924 24 Si 0.971 3.029 25 H -0.260 1.260 26 H -0.265 1.265 27 H -0.269 1.269 28 C -0.182 4.182 29 C 0.127 3.873 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.124 0.876 44 H 0.139 0.861 45 H 0.145 0.855 46 H 0.140 0.860 47 H 0.108 0.892 48 H 0.285 0.715 49 H 0.120 0.880 50 H 0.097 0.903 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.723 35.078 -0.801 35.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.340 6.340 3 C -0.012 4.012 4 C -0.112 4.112 5 H 0.063 0.937 6 C -0.147 4.147 7 C -0.152 4.152 8 C -0.164 4.164 9 C -0.027 4.027 10 N -0.335 5.335 11 C 0.293 3.707 12 O -0.453 6.453 13 C -0.129 4.129 14 C -0.027 4.027 15 C -0.190 4.190 16 C -0.095 4.095 17 C -0.260 4.260 18 C 0.071 3.929 19 O -0.155 6.155 20 C -0.477 4.477 21 H 0.097 0.903 22 C -0.188 4.188 23 N -0.565 5.565 24 Si 0.793 3.207 25 H -0.185 1.185 26 H -0.190 1.190 27 H -0.193 1.193 28 C -0.201 4.201 29 C 0.003 3.997 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.142 0.858 44 H 0.157 0.843 45 H 0.163 0.837 46 H 0.158 0.842 47 H 0.125 0.875 48 H 0.095 0.905 49 H 0.138 0.862 50 H 0.115 0.885 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.079 34.315 -0.921 34.861 hybrid contribution -0.549 -1.085 -0.131 1.223 sum -6.628 33.230 -1.052 33.901 Atomic orbital electron populations 1.22863 0.79894 1.03147 1.01010 1.87989 1.21167 1.29336 1.95554 1.22681 0.92875 0.84228 1.01382 1.20677 0.93776 0.98438 0.98304 0.93694 1.20421 0.96471 0.94615 1.03213 1.21040 0.94248 1.02223 0.97724 1.21777 1.03374 0.94689 0.96511 1.22399 0.88966 0.90333 1.01043 1.47795 1.07354 1.14471 1.63863 1.21051 0.91586 0.81599 0.76497 1.90781 1.51652 1.53218 1.49638 1.20769 0.93541 0.93167 1.05382 1.19236 0.96529 0.93741 0.93202 1.20975 1.06480 0.96952 0.94582 1.21101 0.96783 0.91971 0.99680 1.21309 1.11186 1.00134 0.93365 1.19577 0.95264 0.87995 0.90027 1.83509 1.82483 1.13880 1.35626 1.20723 1.51175 0.81670 0.94084 0.90307 1.25283 0.95446 0.93151 1.04957 1.69736 1.49365 0.99005 1.38407 0.85214 0.79586 0.78169 0.77704 1.18480 1.18985 1.19319 1.20253 1.10466 0.89237 1.00125 1.21338 0.81417 0.99739 0.97184 0.92611 0.90108 0.92932 0.92166 0.91385 0.90207 0.91733 0.93290 0.90056 0.88188 0.90591 0.90228 0.88220 0.85751 0.84288 0.83716 0.84203 0.87453 0.90538 0.86177 0.88530 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.71 16 2 O -0.42 -10.54 10.09 -148.98 -1.50 -12.04 16 3 C 0.06 1.11 5.27 71.98 0.38 1.49 16 4 C -0.09 -1.67 2.31 -11.99 -0.03 -1.70 16 5 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 6 C -0.11 -1.16 4.38 28.62 0.13 -1.04 16 7 C -0.11 -1.03 5.51 29.76 0.16 -0.86 16 8 C -0.13 -0.72 5.71 30.22 0.17 -0.54 16 9 C 0.09 0.90 5.95 86.48 0.51 1.42 16 10 N -0.60 -11.66 2.24 -818.18 -1.83 -13.49 16 11 C 0.50 14.05 7.61 87.66 0.67 14.72 16 12 O -0.57 -23.24 15.47 -3.03 -0.05 -23.28 16 13 C -0.09 -2.04 4.16 29.10 0.12 -1.92 16 14 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 15 C -0.17 -5.79 9.70 22.30 0.22 -5.57 16 16 C -0.08 -2.99 10.04 22.25 0.22 -2.77 16 17 C -0.24 -11.68 9.17 22.39 0.21 -11.47 16 18 C 0.12 6.19 6.65 22.58 0.15 6.34 16 19 O -0.25 -14.49 8.59 -22.85 -0.20 -14.69 16 20 C -0.40 -25.03 9.95 67.92 0.68 -24.36 16 21 H 0.08 5.16 5.44 -2.91 -0.02 5.15 16 22 C 0.01 0.59 5.49 84.83 0.47 1.05 16 23 N -0.92 -57.36 13.96 21.61 0.30 -57.06 16 24 Si 0.97 47.68 28.62 68.60 1.96 49.64 16 25 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 27 H -0.27 -13.42 7.11 99.48 0.71 -12.72 16 28 C -0.18 -7.80 9.65 22.39 0.22 -7.58 16 29 C 0.13 2.57 4.68 87.38 0.41 2.98 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.86 8.07 -2.38 -0.02 0.84 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.57 7.36 -2.39 -0.02 0.56 16 36 H 0.06 0.63 8.06 -2.39 -0.02 0.61 16 37 H 0.05 0.65 7.48 -2.39 -0.02 0.63 16 38 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.08 0.35 7.32 -2.39 -0.02 0.33 16 41 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.10 0.69 5.82 -2.39 -0.01 0.68 16 43 H 0.12 2.24 7.97 -2.39 -0.02 2.22 16 44 H 0.14 2.05 7.35 -2.39 -0.02 2.03 16 45 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 46 H 0.14 4.46 8.06 -2.92 -0.02 4.43 16 47 H 0.11 5.64 5.64 -2.91 -0.02 5.62 16 48 H 0.29 16.15 8.31 -92.71 -0.77 15.38 16 49 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 50 H 0.10 1.37 8.07 -2.39 -0.02 1.35 16 51 H 0.05 1.49 6.73 -2.39 -0.02 1.48 16 Total: -1.00 -84.96 404.79 5.44 -79.52 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.91 Total: 20.50 kcal Atomic # 6 Polarization: -34.93 SS G_CDS: 5.84 Total: -29.10 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -1.53 Total: -70.55 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -1.75 Total: -50.01 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.96 Total: 49.64 kcal Total: -84.96 5.44 -79.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375122774.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.868 kcal (2) G-P(sol) polarization free energy of solvation -84.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds