Wall clock time and date at job start Wed Apr 1 2020 05:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34225 * 117.00154 * 2 1 4 4 O 1.20827 * 120.00198 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99897 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47006 * 180.02562 * 5 3 2 7 7 N 1.46901 * 109.47057 * 181.68111 * 6 5 3 8 8 C 1.46896 * 110.99780 * 294.47051 * 7 6 5 9 9 C 1.50706 * 109.47091 * 170.00310 * 8 7 6 10 10 C 1.38641 * 119.74653 * 269.72414 * 9 8 7 11 11 C 1.37615 * 120.24574 * 179.76342 * 10 9 8 12 12 C 1.40714 * 119.74441 * 0.48490 * 11 10 9 13 13 C 1.41397 * 120.24175 * 179.78857 * 12 11 10 14 14 H 1.07998 * 119.99831 * 30.57443 * 13 12 11 15 15 C 1.39947 * 119.99881 * 210.56748 * 13 12 11 16 16 N 1.30818 * 120.00165 * 12.38223 * 15 13 12 17 17 Si 1.86800 * 119.99769 * 192.37585 * 15 13 12 18 18 H 1.48503 * 109.46946 * 60.00768 * 17 15 13 19 19 H 1.48504 * 109.46950 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47376 * 300.00551 * 17 15 13 21 21 C 1.40715 * 119.51229 * 359.76782 * 12 11 10 22 22 C 1.37619 * 119.74743 * 0.02562 * 21 12 11 23 23 C 1.46901 * 110.99896 * 170.51570 * 7 6 5 24 24 C 1.53001 * 109.47050 * 293.90367 * 23 7 6 25 25 H 1.09005 * 110.55308 * 64.09124 * 24 23 7 26 26 C 1.55226 * 110.64261 * 187.03043 * 24 23 7 27 27 C 1.54812 * 101.98537 * 155.43893 * 26 24 23 28 28 C 1.54102 * 104.30491 * 339.26422 * 27 26 24 29 29 O 1.43735 * 107.29470 * 357.90107 * 28 27 26 30 30 H 1.08997 * 109.47214 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46733 * 299.99794 * 1 2 3 32 32 H 1.08994 * 109.46606 * 59.99490 * 1 2 3 33 33 H 1.08998 * 109.46912 * 60.00261 * 5 3 2 34 34 H 1.08992 * 109.47391 * 300.00053 * 5 3 2 35 35 H 1.08995 * 109.46977 * 61.67980 * 6 5 3 36 36 H 1.09001 * 109.46842 * 301.67925 * 6 5 3 37 37 H 1.08999 * 109.47008 * 289.99589 * 8 7 6 38 38 H 1.08996 * 109.47464 * 50.00042 * 8 7 6 39 39 H 1.08003 * 119.87359 * 359.97438 * 10 9 8 40 40 H 1.07998 * 120.12712 * 180.23053 * 11 10 9 41 41 H 0.96997 * 120.00209 * 179.97438 * 16 15 13 42 42 H 1.08007 * 120.12502 * 179.97438 * 21 12 11 43 43 H 1.07997 * 119.87540 * 180.02562 * 22 21 12 44 44 H 1.09001 * 109.47137 * 173.90861 * 23 7 6 45 45 H 1.08995 * 109.47119 * 53.90268 * 23 7 6 46 46 H 1.09001 * 110.89231 * 37.30823 * 26 24 23 47 47 H 1.09001 * 111.02210 * 273.63119 * 26 24 23 48 48 H 1.08995 * 110.48659 * 220.51937 * 27 26 24 49 49 H 1.08997 * 110.49115 * 98.00573 * 27 26 24 50 50 H 1.08995 * 109.88016 * 117.33313 * 28 27 26 51 51 H 1.09004 * 109.87617 * 238.33213 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0003 2.7420 0.0011 7 7 5.4667 2.8190 -0.0390 8 6 6.0564 2.2686 1.1887 9 6 7.5476 2.1369 1.0144 10 6 8.0801 0.9597 0.5118 11 6 9.4398 0.8300 0.3439 12 6 10.2911 1.8943 0.6941 13 6 11.6901 1.7708 0.5301 14 1 12.0886 1.1519 -0.2601 15 6 12.5583 2.4507 1.3918 16 7 12.0969 2.9994 2.4861 17 14 14.3760 2.5746 0.9794 18 1 14.5421 3.2722 -0.3209 19 1 15.0742 3.3387 2.0443 20 1 14.9568 1.2110 0.8874 21 6 9.7398 3.0825 1.2083 22 6 8.3768 3.1916 1.3637 23 6 5.9154 4.1993 -0.2657 24 6 5.4899 4.6507 -1.6643 25 1 4.4031 4.6793 -1.7431 26 6 6.0999 6.0378 -2.0009 27 6 6.1195 6.0134 -3.5487 28 6 6.0518 4.5161 -3.9068 29 8 6.0499 3.7810 -2.6716 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5139 -0.8899 33 1 3.9564 0.7805 -0.8892 34 1 3.9558 0.7808 0.8907 35 1 3.6354 3.2284 0.9057 36 1 3.5861 3.2436 -0.8735 37 1 5.8460 2.9366 2.0240 38 1 5.6262 1.2877 1.3905 39 1 7.4250 0.1426 0.2478 40 1 9.8522 -0.0865 -0.0514 41 1 12.6987 3.4703 3.0835 42 1 10.3841 3.9055 1.4807 43 1 7.9515 4.1027 1.7578 44 1 7.0012 4.2466 -0.1834 45 1 5.4655 4.8547 0.4801 46 1 7.1098 6.1258 -1.6005 47 1 5.4652 6.8438 -1.6326 48 1 7.0422 6.4544 -3.9255 49 1 5.2540 6.5410 -3.9496 50 1 5.1375 4.3089 -4.4628 51 1 6.9199 4.2384 -4.5046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399240580.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:04 Heat of formation + Delta-G solvation = -112.186498 kcal Electronic energy + Delta-G solvation = -30912.240507 eV Core-core repulsion = 26776.236204 eV Total energy + Delta-G solvation = -4136.004303 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.60662 -39.42419 -38.07863 -36.92881 -36.32176 -33.64585 -32.14557 -31.81679 -30.82804 -29.42245 -29.12294 -27.85132 -26.63361 -24.99913 -23.90832 -22.34139 -21.27067 -21.15719 -20.80248 -20.20713 -19.51458 -17.78257 -17.22000 -16.86328 -16.77538 -16.43641 -15.75820 -15.43822 -15.14805 -15.02584 -14.54547 -14.28952 -14.08590 -13.81222 -13.51766 -13.46240 -13.18444 -13.08153 -12.73139 -12.40435 -12.35330 -12.06949 -11.90081 -11.81897 -11.64728 -11.61117 -11.46590 -11.17803 -11.06170 -10.98978 -10.95274 -10.90851 -10.66925 -10.59775 -10.44206 -10.41216 -10.31398 -9.52668 -9.38438 -9.29535 -9.12354 -7.95082 -7.37134 -7.17042 -6.66670 -4.30653 2.08787 2.53474 2.80381 3.09492 3.12351 3.13411 3.21564 3.96492 3.99088 4.28396 4.61826 4.67577 4.72156 4.83219 4.87339 4.91758 4.94288 4.97459 5.08318 5.17895 5.28458 5.32637 5.50367 5.53526 5.56920 5.68564 5.73977 5.75381 5.77180 5.83428 5.89070 5.95472 5.98631 6.05027 6.12974 6.21390 6.28183 6.38129 6.39667 6.45768 6.98230 7.10852 7.15582 7.28622 7.41418 7.42943 7.44454 7.61967 7.68335 7.92212 8.11605 8.16303 8.36904 8.69759 8.96380 9.03197 10.29461 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.002802 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.511269 B = 9989.079868 C =11785.848273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.465 3.535 4 O -0.513 6.513 5 C -0.112 4.112 6 C 0.064 3.936 7 N -0.520 5.520 8 C 0.113 3.887 9 C -0.197 4.197 10 C -0.069 4.069 11 C -0.220 4.220 12 C 0.115 3.885 13 C -0.468 4.468 14 H 0.075 0.925 15 C 0.075 3.925 16 N -0.805 5.805 17 Si 0.907 3.093 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.266 1.266 21 C -0.156 4.156 22 C -0.099 4.099 23 C 0.060 3.940 24 C 0.082 3.918 25 H 0.062 0.938 26 C -0.152 4.152 27 C -0.155 4.155 28 C 0.043 3.957 29 O -0.345 6.345 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.025 0.975 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.279 0.721 42 H 0.113 0.887 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.040 0.960 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.050 0.950 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.745 2.067 -6.041 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.308 3.692 4 O -0.401 6.401 5 C -0.150 4.150 6 C -0.064 4.064 7 N -0.244 5.244 8 C -0.013 4.013 9 C -0.199 4.199 10 C -0.088 4.088 11 C -0.240 4.240 12 C 0.112 3.888 13 C -0.498 4.498 14 H 0.093 0.907 15 C -0.141 4.141 16 N -0.431 5.431 17 Si 0.732 3.268 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.175 4.175 22 C -0.117 4.117 23 C -0.067 4.067 24 C 0.024 3.976 25 H 0.079 0.921 26 C -0.190 4.190 27 C -0.192 4.192 28 C -0.035 4.035 29 O -0.263 6.263 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.130 0.870 43 H 0.100 0.900 44 H 0.121 0.879 45 H 0.058 0.942 46 H 0.101 0.899 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.069 0.931 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.664 1.982 -6.177 17.882 hybrid contribution 0.259 0.863 0.504 1.032 sum -16.405 2.844 -5.674 17.590 Atomic orbital electron populations 1.23241 0.76601 1.03581 1.02432 1.86535 1.23267 1.33719 1.84161 1.23959 0.92374 0.81118 0.71738 1.90653 1.67469 1.36363 1.45612 1.21424 0.86120 1.00527 1.06896 1.21876 0.89391 0.93533 1.01576 1.62010 1.04809 1.19747 1.37795 1.20869 0.93656 0.98240 0.88513 1.18807 0.91821 0.96638 1.12616 1.20306 0.94475 0.95760 0.98266 1.21028 0.93156 0.98452 1.11353 1.17601 0.92983 0.89913 0.88283 1.19520 0.90994 1.25707 1.13605 0.90684 1.25844 1.01141 0.93281 0.93822 1.69787 1.37559 1.27331 1.08421 0.86389 0.82036 0.79280 0.79077 1.18967 1.20480 1.19119 1.21212 0.92821 0.98384 1.05108 1.20493 0.94206 0.96275 1.00773 1.22220 1.03419 0.88166 0.92924 1.23198 0.96505 0.88206 0.89677 0.92053 1.23209 1.02690 0.97617 0.95461 1.22909 1.02620 0.97441 0.96272 1.23112 1.01204 0.90533 0.88635 1.89105 1.83393 1.36893 1.16901 0.88171 0.92009 0.91982 0.86411 0.87387 0.94592 0.90201 0.95691 0.91358 0.89456 0.89126 0.91068 0.86958 0.89985 0.87866 0.94233 0.89918 0.90590 0.90609 0.91208 0.93144 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.99 10.57 -39.25 -0.41 -4.41 16 3 C 0.46 5.74 7.96 36.01 0.29 6.02 16 4 O -0.51 -7.48 15.72 -18.75 -0.29 -7.77 16 5 C -0.11 -1.32 5.71 -27.88 -0.16 -1.48 16 6 C 0.06 0.86 4.12 -3.82 -0.02 0.84 16 7 N -0.52 -8.10 4.38 -236.07 -1.03 -9.13 16 8 C 0.11 1.90 4.97 -4.98 -0.02 1.87 16 9 C -0.20 -4.12 4.93 -104.33 -0.51 -4.63 16 10 C -0.07 -1.53 9.67 -39.66 -0.38 -1.91 16 11 C -0.22 -5.41 9.80 -38.87 -0.38 -5.79 16 12 C 0.11 3.05 5.52 -106.82 -0.59 2.46 16 13 C -0.47 -12.51 9.05 -37.74 -0.34 -12.85 16 14 H 0.08 1.94 7.88 -52.49 -0.41 1.53 16 15 C 0.08 1.91 5.21 -17.34 -0.09 1.82 16 16 N -0.80 -20.99 11.06 55.55 0.61 -20.37 16 17 Si 0.91 18.95 29.58 -169.99 -5.03 13.92 16 18 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 C -0.16 -3.98 8.65 -38.87 -0.34 -4.32 16 22 C -0.10 -2.21 7.81 -39.66 -0.31 -2.52 16 23 C 0.06 0.92 4.52 -3.82 -0.02 0.90 16 24 C 0.08 1.13 3.11 -25.55 -0.08 1.05 16 25 H 0.06 0.80 6.63 -51.93 -0.34 0.45 16 26 C -0.15 -1.76 6.61 -24.60 -0.16 -1.93 16 27 C -0.15 -1.61 7.00 -25.20 -0.18 -1.79 16 28 C 0.04 0.52 7.70 37.73 0.29 0.81 16 29 O -0.34 -5.55 11.10 -35.23 -0.39 -5.95 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 33 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.11 1.18 6.42 -51.93 -0.33 0.85 16 35 H 0.04 0.48 8.11 -51.93 -0.42 0.06 16 36 H 0.08 1.09 6.12 -51.93 -0.32 0.77 16 37 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 38 H 0.07 1.04 6.03 -51.93 -0.31 0.73 16 39 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 41 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 42 H 0.11 2.99 6.43 -52.48 -0.34 2.65 16 43 H 0.08 1.67 7.86 -52.49 -0.41 1.25 16 44 H 0.10 1.85 5.42 -51.93 -0.28 1.57 16 45 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 46 H 0.08 1.05 8.02 -51.93 -0.42 0.63 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 409.39 15.07 6.17 6.17 Total: -1.00 -29.99 409.39 -10.53 -40.52 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -8.22 Total: 7.10 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -1.94 Total: -20.08 kcal Atomic # 7 Polarization: -29.09 SS G_CDS: -0.42 Total: -29.51 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -1.10 Total: -18.13 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -29.99 -10.53 -40.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399240580.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.665 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds