Wall clock time and date at job start Wed Apr 1 2020 05:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47333 * 2 1 4 4 C 1.53001 * 109.46747 * 239.99192 * 2 1 3 5 5 O 1.42907 * 109.46895 * 65.00663 * 4 2 1 6 6 C 1.42894 * 113.99982 * 179.97438 * 5 4 2 7 7 C 1.54267 * 110.03476 * 267.90736 * 6 5 4 8 8 C 1.54967 * 104.15797 * 217.13898 * 7 6 5 9 9 C 1.54885 * 102.77835 * 37.88752 * 8 7 6 10 10 C 1.53882 * 110.03066 * 150.68803 * 6 5 4 11 11 C 1.53004 * 109.46845 * 119.99918 * 2 1 3 12 12 S 1.81398 * 109.47245 * 294.99835 * 11 2 1 13 13 O 1.42098 * 110.54270 * 68.37241 * 12 11 2 14 14 O 1.42095 * 110.54105 * 291.62828 * 12 11 2 15 15 N 1.65591 * 104.45190 * 180.02562 * 12 11 2 16 16 C 1.46502 * 120.00164 * 64.99822 * 15 12 11 17 17 C 1.52999 * 109.47250 * 165.00294 * 16 15 12 18 18 C 1.53003 * 109.46987 * 299.99809 * 17 16 15 19 19 C 1.53001 * 109.47199 * 60.00155 * 17 16 15 20 20 C 1.50702 * 109.47230 * 180.02562 * 17 16 15 21 21 H 1.08002 * 119.99634 * 356.90153 * 20 17 16 22 22 C 1.37871 * 119.99943 * 176.89728 * 20 17 16 23 23 N 1.31518 * 120.00214 * 5.74584 * 22 20 17 24 24 Si 1.86804 * 119.99896 * 185.73803 * 22 20 17 25 25 H 1.48503 * 109.46789 * 85.02328 * 24 22 20 26 26 H 1.48501 * 109.47213 * 205.02218 * 24 22 20 27 27 H 1.48503 * 109.47083 * 325.02747 * 24 22 20 28 28 H 1.09001 * 109.46934 * 59.99994 * 1 2 3 29 29 H 1.08997 * 109.47112 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46878 * 300.00074 * 1 2 3 31 31 H 1.09006 * 109.46741 * 185.00094 * 4 2 1 32 32 H 1.08999 * 109.47863 * 305.00641 * 4 2 1 33 33 H 1.09007 * 110.01737 * 29.30127 * 6 5 4 34 34 H 1.08992 * 110.48412 * 335.78536 * 7 6 5 35 35 H 1.08996 * 110.48571 * 98.42761 * 7 6 5 36 36 H 1.09008 * 110.71617 * 279.57148 * 8 7 6 37 37 H 1.09001 * 110.92161 * 156.30094 * 8 7 6 38 38 H 1.09010 * 110.48492 * 203.40497 * 9 8 7 39 39 H 1.08998 * 110.59916 * 80.82324 * 9 8 7 40 40 H 1.08994 * 110.03047 * 238.56858 * 10 6 5 41 41 H 1.08997 * 110.02712 * 359.95890 * 10 6 5 42 42 H 1.09003 * 109.47114 * 174.99318 * 11 2 1 43 43 H 1.09005 * 109.47391 * 54.99782 * 11 2 1 44 44 H 0.97003 * 120.00171 * 245.00246 * 15 12 11 45 45 H 1.08999 * 109.46951 * 284.99851 * 16 15 12 46 46 H 1.08991 * 109.47057 * 44.99966 * 16 15 12 47 47 H 1.09004 * 109.47075 * 53.85441 * 18 17 16 48 48 H 1.09002 * 109.47056 * 173.84866 * 18 17 16 49 49 H 1.08992 * 109.47155 * 293.85425 * 18 17 16 50 50 H 1.08990 * 109.47502 * 60.00179 * 19 17 16 51 51 H 1.08998 * 109.47304 * 180.02562 * 19 17 16 52 52 H 1.09000 * 109.46930 * 299.99436 * 19 17 16 53 53 H 0.97003 * 120.00073 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 1.6620 0.0166 -2.4131 6 6 2.0922 -0.5742 -3.6410 7 6 3.4663 -0.0038 -4.0489 8 6 3.3865 0.1100 -5.5923 9 6 1.9245 0.5644 -5.8271 10 6 1.1122 -0.2135 -4.7713 11 6 2.0400 -0.7213 1.2493 12 16 1.5601 0.2156 2.7266 13 8 0.1520 0.1684 2.9114 14 8 2.2659 1.4474 2.7869 15 7 2.1682 -0.6652 3.9902 16 6 3.6168 -0.8195 4.1454 17 6 3.9269 -1.3358 5.5519 18 6 3.4064 -0.3374 6.5879 19 6 3.2446 -2.6894 5.7602 20 6 5.4170 -1.4940 5.7118 21 1 6.0734 -1.2985 4.8768 22 6 5.9422 -1.8880 6.9242 23 7 5.1399 -2.2348 7.9069 24 14 7.7934 -1.9295 7.1708 25 1 8.2707 -0.5795 7.5647 26 1 8.1287 -2.9044 8.2397 27 1 8.4526 -2.3375 5.9042 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1263 -0.7997 -1.2055 32 1 1.6053 -1.7200 -1.2951 33 1 2.1547 -1.6570 -3.5324 34 1 3.6197 0.9781 -3.6016 35 1 4.2645 -0.6861 -3.7567 36 1 3.5703 -0.8572 -6.0603 37 1 4.0877 0.8569 -5.9644 38 1 1.5986 0.2968 -6.8324 39 1 1.8266 1.6383 -5.6687 40 1 0.6999 -1.1212 -5.2117 41 1 0.3082 0.4115 -4.3829 42 1 3.1263 -0.7996 1.2056 43 1 1.6053 -1.7198 1.2953 44 1 1.5654 -1.0790 4.6275 45 1 3.9876 -1.5307 3.4074 46 1 4.1029 0.1447 3.9970 47 1 2.3505 -0.1396 6.4034 48 1 3.5285 -0.7544 7.5876 49 1 3.9692 0.5927 6.5109 50 1 3.6154 -3.4006 5.0222 51 1 3.4651 -3.0570 6.7623 52 1 2.1668 -2.5745 5.6448 53 1 5.5095 -2.5124 8.7597 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416526670.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:23 Heat of formation + Delta-G solvation = -167.943698 kcal Electronic energy + Delta-G solvation = -29497.086493 eV Core-core repulsion = 25494.108328 eV Total energy + Delta-G solvation = -4002.978165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.196 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.05687 -38.62944 -38.09882 -37.79286 -36.98396 -35.62084 -34.89218 -32.31796 -29.65598 -29.03214 -28.43537 -27.50428 -27.36805 -26.88411 -26.19296 -21.85762 -21.63587 -21.17980 -20.73675 -20.17798 -18.89568 -18.19512 -17.64081 -17.41135 -16.96520 -16.71465 -16.60667 -16.41377 -15.80447 -15.42432 -15.29192 -14.99939 -14.78398 -14.51320 -14.23862 -14.18659 -14.02522 -13.76192 -13.39503 -13.25048 -13.17223 -13.05691 -12.86367 -12.78767 -12.71959 -12.57210 -12.51980 -12.41425 -12.31955 -12.21107 -12.07101 -12.01521 -11.99729 -11.88990 -11.49395 -11.48727 -11.43075 -11.35672 -11.06458 -10.65801 -10.42443 -10.35994 -10.12637 -7.97290 -6.11990 -0.68885 1.45792 1.49148 1.55196 1.83272 2.48905 2.57821 2.92022 3.26123 3.27148 3.54347 3.65249 3.67181 3.72124 3.89910 4.06859 4.23249 4.25291 4.32705 4.36959 4.54108 4.55160 4.58097 4.59793 4.63275 4.71310 4.79100 4.79970 4.80415 4.85353 4.87876 4.95852 5.02279 5.07096 5.12792 5.14485 5.18997 5.22839 5.25564 5.29743 5.30182 5.30596 5.45186 5.54943 5.72727 5.73484 6.12195 6.21149 6.31696 6.34978 6.48452 6.95233 7.55331 9.02085 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.002268 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.003191 B =12343.516980 C =13717.282120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.082 4.082 3 H 0.082 0.918 4 C 0.074 3.926 5 O -0.396 6.396 6 C 0.077 3.923 7 C -0.152 4.152 8 C -0.121 4.121 9 C -0.123 4.123 10 C -0.125 4.125 11 C -0.608 4.608 12 S 2.614 3.386 13 O -0.985 6.985 14 O -0.999 6.999 15 N -1.112 6.112 16 C 0.132 3.868 17 C 0.051 3.949 18 C -0.124 4.124 19 C -0.123 4.123 20 C -0.523 4.523 21 H 0.057 0.943 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.944 3.056 25 H -0.284 1.284 26 H -0.289 1.289 27 H -0.268 1.268 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.156 0.844 43 H 0.166 0.834 44 H 0.417 0.583 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.029 0.971 48 H 0.055 0.945 49 H 0.015 0.985 50 H 0.033 0.967 51 H 0.055 0.945 52 H 0.033 0.967 53 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.035 -0.548 -25.362 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.102 4.102 3 H 0.100 0.900 4 C -0.003 4.003 5 O -0.316 6.316 6 C 0.020 3.980 7 C -0.189 4.189 8 C -0.159 4.159 9 C -0.161 4.161 10 C -0.162 4.162 11 C -0.740 4.740 12 S 2.711 3.289 13 O -0.976 6.976 14 O -0.990 6.990 15 N -0.873 5.873 16 C 0.006 3.994 17 C 0.049 3.951 18 C -0.182 4.182 19 C -0.181 4.181 20 C -0.562 4.562 21 H 0.076 0.924 22 C -0.177 4.177 23 N -0.542 5.542 24 Si 0.771 3.229 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.192 1.192 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.174 0.826 43 H 0.184 0.816 44 H 0.254 0.746 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.048 0.952 48 H 0.074 0.926 49 H 0.034 0.966 50 H 0.052 0.948 51 H 0.074 0.926 52 H 0.052 0.948 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.496 0.463 -25.181 26.277 hybrid contribution 1.318 -0.742 0.849 1.734 sum -6.178 -0.279 -24.332 25.106 Atomic orbital electron populations 1.22257 0.93469 1.04293 1.03447 1.20814 0.97321 1.00016 0.92016 0.89955 1.22524 0.99325 0.94747 0.83707 1.87913 1.78628 1.50998 1.14069 1.22999 0.93943 0.97120 0.83986 1.22942 0.97095 1.01616 0.97287 1.22453 0.96873 1.02094 0.94453 1.22346 0.94964 0.99800 0.98969 1.22261 0.98015 1.01375 0.94559 1.30485 1.13998 1.15477 1.14066 1.04564 0.73106 0.74868 0.76359 1.93531 1.31081 1.87396 1.85562 1.93543 1.75220 1.43584 1.86604 1.55403 1.15321 1.72905 1.43701 1.21420 0.77673 1.00214 1.00068 1.18321 0.94412 0.92543 0.89803 1.21693 0.96622 0.97739 1.02110 1.21696 0.96471 0.97905 1.02005 1.21356 0.92297 1.45576 0.96986 0.92438 1.25533 1.00995 0.94979 0.96209 1.69972 1.35124 1.45252 1.03829 0.85793 0.81995 0.77338 0.77756 1.20990 1.21531 1.19238 0.90388 0.90250 0.92391 0.92013 0.91147 0.90807 0.91813 0.90956 0.90391 0.90963 0.90190 0.92072 0.89762 0.91425 0.82629 0.81645 0.74631 0.90614 0.92562 0.95224 0.92616 0.96589 0.94815 0.92604 0.94828 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.62 8.78 71.98 0.63 -2.99 16 2 C -0.08 -1.62 2.63 -10.79 -0.03 -1.65 16 3 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 4 C 0.07 1.24 5.16 71.98 0.37 1.61 16 5 O -0.40 -7.57 9.43 -148.98 -1.41 -8.97 16 6 C 0.08 1.13 3.38 31.32 0.11 1.23 16 7 C -0.15 -2.11 6.57 31.70 0.21 -1.90 16 8 C -0.12 -1.31 6.91 31.91 0.22 -1.09 16 9 C -0.12 -1.36 6.83 31.67 0.22 -1.15 16 10 C -0.12 -1.58 6.61 31.32 0.21 -1.37 16 11 C -0.61 -11.50 5.51 71.98 0.40 -11.10 16 12 S 2.61 75.64 5.11 -56.49 -0.29 75.35 16 13 O -0.99 -32.11 15.83 -127.65 -2.02 -34.13 16 14 O -1.00 -37.05 17.49 -127.65 -2.23 -39.29 16 15 N -1.11 -34.85 5.13 -187.50 -0.96 -35.81 16 16 C 0.13 4.78 4.96 86.38 0.43 5.21 16 17 C 0.05 2.27 0.51 -52.93 -0.03 2.24 16 18 C -0.12 -5.79 8.04 71.98 0.58 -5.21 16 19 C -0.12 -5.23 8.11 71.98 0.58 -4.64 16 20 C -0.52 -26.24 8.01 25.60 0.20 -26.03 16 21 H 0.06 2.81 7.75 -2.91 -0.02 2.78 16 22 C 0.02 1.15 5.13 84.65 0.43 1.59 16 23 N -0.90 -48.41 9.46 21.45 0.20 -48.21 16 24 Si 0.94 41.63 29.54 68.60 2.03 43.66 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 H 0.08 1.52 7.82 -2.39 -0.02 1.50 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.39 5.61 -2.39 -0.01 1.38 16 31 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.07 0.94 8.10 -2.39 -0.02 0.92 16 33 H 0.07 0.90 7.81 -2.38 -0.02 0.88 16 34 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.68 8.14 -2.38 -0.02 0.67 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 1.01 7.95 -2.39 -0.02 0.99 16 42 H 0.16 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.17 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.42 12.81 6.45 -96.75 -0.62 12.18 16 45 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.06 2.16 7.69 -2.39 -0.02 2.14 16 47 H 0.03 1.22 7.04 -2.39 -0.02 1.21 16 48 H 0.05 2.86 6.25 -2.39 -0.01 2.85 16 49 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.06 2.73 6.11 -2.39 -0.01 2.72 16 52 H 0.03 1.22 6.60 -2.39 -0.02 1.20 16 53 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 Total: -1.00 -65.41 416.00 0.10 -65.31 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.24 Total: 27.33 kcal Atomic # 6 Polarization: -49.77 SS G_CDS: 4.53 Total: -45.24 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -0.76 Total: -84.02 kcal Atomic # 8 Polarization: -76.73 SS G_CDS: -5.66 Total: -82.39 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 75.64 SS G_CDS: -0.29 Total: 75.35 kcal Total: -65.41 0.10 -65.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416526670.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.632 kcal (2) G-P(sol) polarization free energy of solvation -65.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds