Wall clock time and date at job start Wed Apr 1 2020 05:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46590 * 2 1 4 4 C 1.52997 * 109.47446 * 120.00616 * 2 1 3 5 5 O 1.42901 * 109.46723 * 295.00100 * 4 2 1 6 6 C 1.42906 * 113.99858 * 180.02562 * 5 4 2 7 7 C 1.55241 * 110.57603 * 264.87330 * 6 5 4 8 8 C 1.54893 * 102.58444 * 203.33568 * 7 6 5 9 9 C 1.54271 * 104.31242 * 37.93417 * 8 7 6 10 10 C 1.53877 * 106.59863 * 336.32126 * 9 8 7 11 11 C 1.53005 * 109.46752 * 240.00412 * 2 1 3 12 12 S 1.81405 * 109.47137 * 65.00073 * 11 2 1 13 13 O 1.42103 * 110.53940 * 291.61991 * 12 11 2 14 14 O 1.42095 * 110.54371 * 68.37054 * 12 11 2 15 15 N 1.65594 * 104.45093 * 179.97438 * 12 11 2 16 16 C 1.46499 * 120.00337 * 64.99609 * 15 12 11 17 17 C 1.52995 * 109.47344 * 165.00312 * 16 15 12 18 18 C 1.52997 * 109.46985 * 299.99840 * 17 16 15 19 19 C 1.53002 * 109.47113 * 59.99979 * 17 16 15 20 20 C 1.50696 * 109.47118 * 180.02562 * 17 16 15 21 21 H 1.08004 * 120.00351 * 356.90258 * 20 17 16 22 22 C 1.37876 * 120.00242 * 176.89796 * 20 17 16 23 23 N 1.31513 * 119.99721 * 5.74566 * 22 20 17 24 24 Si 1.86803 * 120.00241 * 185.74001 * 22 20 17 25 25 H 1.48496 * 109.46937 * 85.02549 * 24 22 20 26 26 H 1.48503 * 109.47173 * 205.01980 * 24 22 20 27 27 H 1.48503 * 109.47233 * 325.02147 * 24 22 20 28 28 H 1.09005 * 109.46577 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46775 * 299.99289 * 1 2 3 30 30 H 1.08995 * 109.47280 * 59.99938 * 1 2 3 31 31 H 1.08997 * 109.47458 * 175.00057 * 4 2 1 32 32 H 1.08997 * 109.47053 * 54.99928 * 4 2 1 33 33 H 1.09001 * 110.43153 * 27.45370 * 6 5 4 34 34 H 1.08998 * 110.89746 * 85.05197 * 7 6 5 35 35 H 1.08998 * 110.76693 * 321.56575 * 7 6 5 36 36 H 1.09003 * 110.48793 * 279.19089 * 8 7 6 37 37 H 1.08996 * 110.48890 * 156.67552 * 8 7 6 38 38 H 1.08998 * 110.03417 * 95.60640 * 9 8 7 39 39 H 1.09004 * 110.03304 * 216.99305 * 9 8 7 40 40 H 1.09000 * 110.03312 * 119.28402 * 10 9 8 41 41 H 1.08997 * 110.03565 * 240.67045 * 10 9 8 42 42 H 1.09004 * 109.46725 * 184.99328 * 11 2 1 43 43 H 1.08987 * 109.47258 * 304.99945 * 11 2 1 44 44 H 0.96997 * 119.99870 * 245.00203 * 15 12 11 45 45 H 1.09004 * 109.47035 * 285.00190 * 16 15 12 46 46 H 1.09001 * 109.47187 * 44.99726 * 16 15 12 47 47 H 1.09005 * 109.47143 * 53.85189 * 18 17 16 48 48 H 1.09003 * 109.47169 * 173.84931 * 18 17 16 49 49 H 1.09000 * 109.47411 * 293.85022 * 18 17 16 50 50 H 1.08993 * 109.46975 * 60.00529 * 19 17 16 51 51 H 1.09002 * 109.46944 * 179.97438 * 19 17 16 52 52 H 1.08994 * 109.47183 * 299.99627 * 19 17 16 53 53 H 0.97008 * 119.99789 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 8 1.6620 0.0166 2.4130 6 6 2.0925 -0.5741 3.6410 7 6 0.9652 -1.4513 4.2491 8 6 1.3381 -1.4859 5.7520 9 6 1.8625 -0.0654 6.0476 10 6 2.3421 0.5142 4.7053 11 6 2.0400 -0.7212 -1.2494 12 16 1.5600 0.2158 -2.7267 13 8 0.1519 0.1684 -2.9115 14 8 2.2658 1.4476 -2.7870 15 7 2.1681 -0.6649 -3.9903 16 6 1.6522 -2.0089 -4.2619 17 6 2.0875 -2.4492 -5.6609 18 6 1.5338 -1.4710 -6.6988 19 6 3.6155 -2.4642 -5.7385 20 6 1.5562 -3.8314 -5.9405 21 1 1.0096 -4.3646 -5.1767 22 6 1.7678 -4.4154 -7.1715 23 7 2.5279 -3.8160 -8.0617 24 14 0.9749 -6.0580 -7.5747 25 1 -0.4036 -5.8318 -8.0784 26 1 1.7748 -6.7514 -8.6162 27 1 0.9232 -6.8966 -6.3502 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.1264 -0.7996 1.2055 32 1 1.6055 -1.7199 1.2949 33 1 2.9934 -1.1669 3.4828 34 1 0.9814 -2.4549 3.8240 35 1 -0.0089 -0.9844 4.1034 36 1 2.1173 -2.2259 5.9349 37 1 0.4586 -1.7016 6.3585 38 1 1.0614 0.5509 6.4556 39 1 2.6926 -0.1130 6.7525 40 1 1.7738 1.4119 4.4619 41 1 3.4053 0.7487 4.7584 42 1 3.1263 -0.7993 -1.2058 43 1 1.6054 -1.7196 -1.2953 44 1 2.8661 -0.2910 -4.5506 45 1 2.0467 -2.7058 -3.5224 46 1 0.5636 -1.9982 -4.2066 47 1 1.8282 -0.4553 -6.4343 48 1 1.9325 -1.7203 -7.6822 49 1 0.4462 -1.5402 -6.7195 50 1 4.0099 -3.1612 -4.9991 51 1 3.9256 -2.7784 -6.7351 52 1 3.9994 -1.4644 -5.5365 53 1 2.6771 -4.2270 -8.9276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416526671.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:27 Heat of formation + Delta-G solvation = -167.730842 kcal Electronic energy + Delta-G solvation = -29476.646484 eV Core-core repulsion = 25473.677549 eV Total energy + Delta-G solvation = -4002.968935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.196 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.00337 -38.61579 -38.10331 -37.81610 -36.97837 -35.65977 -34.88649 -32.31260 -29.65404 -29.03089 -28.45079 -27.50029 -27.36267 -26.85118 -26.17738 -21.88221 -21.65104 -21.10413 -20.73841 -20.14081 -18.92160 -18.23442 -17.64149 -17.29662 -17.18156 -16.74561 -16.52565 -16.34594 -15.66226 -15.37089 -15.16767 -15.11125 -14.96760 -14.67949 -14.23676 -14.05194 -13.86992 -13.63420 -13.36235 -13.29480 -13.27134 -13.06329 -12.94508 -12.84127 -12.73898 -12.70071 -12.51354 -12.42465 -12.24578 -12.13743 -12.09087 -12.06490 -12.03507 -11.89758 -11.50660 -11.45286 -11.35701 -11.31371 -11.05887 -10.65245 -10.39395 -10.35518 -10.11715 -7.96831 -6.11429 -0.68388 1.46107 1.49471 1.55454 1.83976 2.49152 2.56727 2.91680 3.26423 3.27626 3.54332 3.64557 3.69740 3.72604 3.88479 4.06553 4.22858 4.26996 4.30537 4.36869 4.53192 4.55549 4.58384 4.60537 4.64485 4.71430 4.72355 4.79726 4.80702 4.85209 4.88870 4.95156 5.05683 5.08321 5.13883 5.14951 5.19745 5.22948 5.26310 5.28181 5.30261 5.32750 5.45660 5.55656 5.73133 5.73996 6.12088 6.21147 6.32054 6.34027 6.48912 6.95939 7.55842 9.02525 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015920 B = 0.002182 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.376046 B =12830.283870 C =13854.855936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.080 4.080 3 H 0.087 0.913 4 C 0.075 3.925 5 O -0.395 6.395 6 C 0.076 3.924 7 C -0.147 4.147 8 C -0.122 4.122 9 C -0.121 4.121 10 C -0.125 4.125 11 C -0.608 4.608 12 S 2.614 3.386 13 O -0.987 6.987 14 O -0.997 6.997 15 N -1.113 6.113 16 C 0.133 3.867 17 C 0.051 3.949 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.522 4.522 21 H 0.058 0.942 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.944 3.056 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.268 1.268 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.164 0.836 43 H 0.157 0.843 44 H 0.416 0.584 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.028 0.972 48 H 0.054 0.946 49 H 0.016 0.984 50 H 0.033 0.967 51 H 0.055 0.945 52 H 0.032 0.968 53 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.765 4.565 25.942 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.100 4.100 3 H 0.106 0.894 4 C -0.003 4.003 5 O -0.315 6.315 6 C 0.018 3.982 7 C -0.185 4.185 8 C -0.160 4.160 9 C -0.159 4.159 10 C -0.163 4.163 11 C -0.741 4.741 12 S 2.711 3.289 13 O -0.977 6.977 14 O -0.988 6.988 15 N -0.874 5.874 16 C 0.007 3.993 17 C 0.049 3.951 18 C -0.181 4.181 19 C -0.181 4.181 20 C -0.561 4.561 21 H 0.076 0.924 22 C -0.178 4.178 23 N -0.542 5.542 24 Si 0.771 3.229 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.192 1.192 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.182 0.818 43 H 0.175 0.825 44 H 0.252 0.748 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.047 0.953 48 H 0.073 0.927 49 H 0.035 0.965 50 H 0.052 0.948 51 H 0.074 0.926 52 H 0.051 0.949 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.092 5.449 25.757 26.349 hybrid contribution 0.204 -1.398 -0.879 1.665 sum 1.296 4.050 24.877 25.238 Atomic orbital electron populations 1.22265 0.93889 1.04072 1.03423 1.20810 0.97026 1.00193 0.91998 0.89431 1.22532 0.99384 0.94768 0.83597 1.87879 1.78935 1.50585 1.14055 1.23272 0.96686 0.94539 0.83701 1.23037 0.99078 0.99898 0.96499 1.22287 1.01474 0.97194 0.95026 1.22092 1.01217 0.96257 0.96315 1.22224 1.01920 0.98258 0.93907 1.30488 1.14248 1.15276 1.14047 1.04569 0.73836 0.74146 0.76339 1.93542 1.32051 1.87041 1.85113 1.93533 1.75042 1.43207 1.86968 1.55412 1.55346 1.29530 1.47080 1.21416 0.97734 0.80730 0.99373 1.18321 0.93366 0.93553 0.89871 1.21689 0.98057 0.96440 1.01936 1.21702 0.97008 0.97615 1.01801 1.21354 1.34865 1.01078 0.98792 0.92384 1.25539 0.95427 1.00155 0.96657 1.69976 1.37750 1.39815 1.06665 0.85792 0.78276 0.80917 0.77885 1.20987 1.21601 1.19225 0.90740 0.90403 0.92380 0.91377 0.91654 0.90538 0.91068 0.91530 0.90705 0.90837 0.91488 0.90493 0.91670 0.90646 0.81780 0.82468 0.74757 0.90667 0.92288 0.95273 0.92688 0.96516 0.94830 0.92623 0.94894 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.91 8.78 71.98 0.63 -3.27 16 2 C -0.08 -1.57 2.62 -10.79 -0.03 -1.60 16 3 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.07 1.23 5.16 71.98 0.37 1.60 16 5 O -0.39 -7.46 9.60 -148.98 -1.43 -8.89 16 6 C 0.08 1.10 3.35 31.79 0.11 1.21 16 7 C -0.15 -1.94 6.65 32.01 0.21 -1.73 16 8 C -0.12 -1.23 6.82 31.67 0.22 -1.01 16 9 C -0.12 -1.23 6.80 31.32 0.21 -1.02 16 10 C -0.13 -1.63 6.56 31.32 0.21 -1.43 16 11 C -0.61 -11.39 5.51 71.98 0.40 -10.99 16 12 S 2.61 75.23 5.11 -56.49 -0.29 74.94 16 13 O -0.99 -34.93 15.25 -127.65 -1.95 -36.88 16 14 O -1.00 -33.87 18.08 -127.65 -2.31 -36.18 16 15 N -1.11 -34.74 5.13 -187.49 -0.96 -35.70 16 16 C 0.13 4.77 4.96 86.38 0.43 5.19 16 17 C 0.05 2.25 0.51 -52.93 -0.03 2.22 16 18 C -0.12 -5.75 8.04 71.98 0.58 -5.17 16 19 C -0.12 -5.25 8.11 71.98 0.58 -4.66 16 20 C -0.52 -26.04 8.01 25.60 0.20 -25.83 16 21 H 0.06 2.81 7.75 -2.91 -0.02 2.79 16 22 C 0.02 1.12 5.13 84.65 0.43 1.55 16 23 N -0.90 -48.38 9.46 21.45 0.20 -48.18 16 24 Si 0.94 41.54 29.54 68.60 2.03 43.57 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 26 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 28 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.08 1.61 7.82 -2.39 -0.02 1.59 16 30 H 0.06 1.48 5.61 -2.39 -0.01 1.47 16 31 H 0.07 0.91 8.11 -2.39 -0.02 0.89 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 0.94 7.82 -2.39 -0.02 0.93 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.06 1.01 8.07 -2.39 -0.02 0.99 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.16 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.16 2.42 8.14 -2.40 -0.02 2.40 16 44 H 0.42 12.87 6.45 -96.75 -0.62 12.25 16 45 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 46 H 0.06 2.22 7.70 -2.39 -0.02 2.20 16 47 H 0.03 1.20 7.04 -2.38 -0.02 1.18 16 48 H 0.05 2.82 6.25 -2.39 -0.01 2.80 16 49 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 51 H 0.05 2.72 6.11 -2.39 -0.01 2.71 16 52 H 0.03 1.20 6.60 -2.39 -0.02 1.18 16 53 H 0.26 13.37 8.31 -92.70 -0.77 12.60 16 Total: -1.00 -65.04 416.25 0.07 -64.97 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.24 Total: 27.30 kcal Atomic # 6 Polarization: -49.48 SS G_CDS: 4.53 Total: -44.96 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -0.76 Total: -83.88 kcal Atomic # 8 Polarization: -76.26 SS G_CDS: -5.68 Total: -81.94 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 75.23 SS G_CDS: -0.29 Total: 74.94 kcal Total: -65.04 0.07 -64.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416526671.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.761 kcal (2) G-P(sol) polarization free energy of solvation -65.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds