Wall clock time and date at job start Wed Apr 1 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00313 * 2 1 4 4 C 1.52997 * 109.47396 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47319 * 64.99884 * 4 3 2 6 6 C 1.35900 * 117.00172 * 179.97438 * 5 4 3 7 7 C 1.38746 * 120.05467 * 359.72752 * 6 5 4 8 8 C 1.38129 * 119.94586 * 179.74253 * 7 6 5 9 9 C 1.38288 * 120.05279 * 0.50650 * 8 7 6 10 10 C 1.38250 * 120.10917 * 359.76642 * 9 8 7 11 11 C 1.50704 * 119.96871 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47316 * 270.02249 * 11 10 9 13 13 O 1.21290 * 119.99827 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00163 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99984 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47189 * 89.99806 * 15 14 12 17 17 H 1.08002 * 120.00352 * 359.97438 * 16 15 14 18 18 C 1.37870 * 119.99836 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00434 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 120.00247 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46820 * 59.99692 * 20 18 16 22 22 H 1.48490 * 109.47431 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46860 * 300.00170 * 20 18 16 24 24 C 1.46498 * 119.99654 * 359.97438 * 14 12 11 25 25 C 1.52996 * 109.46924 * 90.00311 * 24 14 12 26 26 C 1.53001 * 117.49811 * 243.61581 * 25 24 14 27 27 C 1.53005 * 60.00293 * 252.51197 * 26 25 24 28 28 C 1.38162 * 120.05723 * 359.97438 * 10 9 8 29 29 H 1.08998 * 109.47187 * 59.99969 * 1 2 3 30 30 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46799 * 300.00326 * 1 2 3 32 32 H 1.09001 * 109.46993 * 59.99365 * 3 2 1 33 33 H 1.09004 * 109.46505 * 300.00140 * 3 2 1 34 34 H 1.09002 * 109.47153 * 304.99576 * 4 3 2 35 35 H 1.09001 * 109.46832 * 184.99767 * 4 3 2 36 36 H 1.08010 * 120.02919 * 359.97292 * 7 6 5 37 37 H 1.07992 * 119.97408 * 180.25091 * 8 7 6 38 38 H 1.07997 * 119.94352 * 179.74725 * 9 8 7 39 39 H 1.09003 * 109.46632 * 30.02434 * 11 10 9 40 40 H 1.08996 * 109.46429 * 150.02007 * 11 10 9 41 41 H 1.09002 * 109.46617 * 209.99862 * 15 14 12 42 42 H 1.08996 * 109.47031 * 329.99907 * 15 14 12 43 43 H 0.96999 * 120.00819 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.46875 * 210.00361 * 24 14 12 45 45 H 1.08999 * 109.47342 * 329.99830 * 24 14 12 46 46 H 1.08995 * 115.55432 * 29.33035 * 25 24 14 47 47 H 1.08994 * 117.49889 * 0.02562 * 26 25 24 48 48 H 1.08994 * 117.49620 * 145.02166 * 26 25 24 49 49 H 1.08994 * 117.49986 * 252.51322 * 27 26 25 50 50 H 1.08998 * 117.49424 * 107.49046 * 27 26 25 51 51 H 1.07998 * 120.02891 * 180.02562 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3020 0.3987 -1.3841 7 6 6.1831 0.8006 -0.3906 8 6 7.5414 0.6108 -0.5554 9 6 8.0239 0.0304 -1.7141 10 6 7.1483 -0.3657 -2.7080 11 6 7.6777 -0.9975 -3.9697 12 6 7.9555 0.0757 -4.9906 13 8 7.7448 1.2391 -4.7200 14 7 8.4380 -0.2573 -6.2041 15 6 8.7086 0.7861 -7.1963 16 6 10.1279 1.2689 -7.0433 17 1 10.7647 0.8416 -6.2828 18 6 10.6136 2.2560 -7.8743 19 7 9.8385 2.7761 -8.8007 20 14 12.3733 2.8540 -7.6852 21 1 13.3071 1.7182 -7.8934 22 1 12.6478 3.9108 -8.6916 23 1 12.5639 3.4078 -6.3206 24 6 8.6929 -1.6625 -6.5306 25 6 7.4348 -2.2797 -7.1447 26 6 6.7601 -3.4186 -6.3776 27 6 7.5336 -3.7156 -7.6639 28 6 5.7885 -0.1830 -2.5456 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8515 0.5683 0.8410 35 1 3.9785 2.1765 0.0889 36 1 5.8071 1.2581 0.5127 37 1 8.2273 0.9198 0.2193 38 1 9.0865 -0.1134 -1.8430 39 1 8.5995 -1.5351 -3.7477 40 1 6.9378 -1.6929 -4.3658 41 1 8.5689 0.3798 -8.1981 42 1 8.0229 1.6195 -7.0434 43 1 10.1800 3.4708 -9.3851 44 1 9.5145 -1.7264 -7.2441 45 1 8.9574 -2.2043 -5.6226 46 1 6.7915 -1.5901 -7.6912 47 1 7.2122 -3.7279 -5.4353 48 1 5.6725 -3.4783 -6.4192 49 1 6.9549 -3.9706 -8.5516 50 1 8.4948 -4.2205 -7.5678 51 1 5.1050 -0.4930 -3.3221 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435015736.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:57 Heat of formation + Delta-G solvation = -68.519544 kcal Electronic energy + Delta-G solvation = -30213.258218 eV Core-core repulsion = 26079.147456 eV Total energy + Delta-G solvation = -4134.110762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.20716 -39.21952 -38.23096 -37.33893 -36.88701 -34.35354 -32.66763 -32.19215 -31.40648 -29.39018 -28.36758 -27.17231 -26.64204 -25.76128 -23.62438 -22.68936 -22.40221 -22.25221 -20.88634 -20.57891 -18.57399 -17.69242 -17.11945 -16.54383 -16.46840 -16.37509 -16.02449 -15.70437 -15.33145 -15.30821 -15.07460 -14.81682 -14.54754 -14.26608 -13.94598 -13.52822 -13.21353 -12.97372 -12.86256 -12.76250 -12.40240 -12.32808 -12.05392 -11.88222 -11.69094 -11.59308 -11.40519 -11.33142 -11.29178 -11.15663 -10.92884 -10.85298 -10.71543 -10.53723 -10.30171 -10.06098 -10.05353 -9.78367 -9.59234 -8.97517 -8.53630 -8.39659 -8.02461 -7.62100 -6.00647 -4.05144 1.47362 1.64337 3.09906 3.33728 3.38165 3.38486 3.40394 3.50544 3.76963 3.93277 4.16654 4.48152 4.55969 4.76355 4.84037 4.88090 4.92720 4.97254 4.99709 5.04229 5.06427 5.08956 5.10621 5.19028 5.28327 5.33165 5.34851 5.42447 5.47068 5.49270 5.54824 5.63785 5.71841 5.78233 5.88237 5.90763 6.02029 6.13056 6.18926 6.21022 6.41866 6.49334 6.56994 6.74789 6.79647 6.89576 7.12540 7.49165 7.50344 7.59837 7.96009 8.27766 8.47601 8.94431 9.16570 9.59728 11.07393 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010226 B = 0.002518 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.404290 B =11115.704813 C =12415.425842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.062 3.938 5 O -0.308 6.308 6 C 0.128 3.872 7 C -0.215 4.215 8 C -0.080 4.080 9 C -0.141 4.141 10 C -0.014 4.014 11 C -0.108 4.108 12 C 0.511 3.489 13 O -0.531 6.531 14 N -0.596 5.596 15 C 0.247 3.753 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.142 3.858 25 C -0.165 4.165 26 C -0.186 4.186 27 C -0.176 4.176 28 C -0.135 4.135 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.032 0.968 42 H 0.042 0.958 43 H 0.263 0.737 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.094 0.906 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.215 -10.490 16.422 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.222 6.222 6 C 0.083 3.917 7 C -0.234 4.234 8 C -0.098 4.098 9 C -0.159 4.159 10 C -0.015 4.015 11 C -0.148 4.148 12 C 0.297 3.703 13 O -0.408 6.408 14 N -0.328 5.328 15 C 0.128 3.872 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C 0.017 3.983 25 C -0.184 4.184 26 C -0.223 4.223 27 C -0.214 4.214 28 C -0.154 4.154 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.126 0.874 47 H 0.112 0.888 48 H 0.109 0.891 49 H 0.110 0.890 50 H 0.112 0.888 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.373 -9.912 16.262 23.271 hybrid contribution 0.856 0.732 0.134 1.134 sum -12.517 -9.180 16.396 22.578 Atomic orbital electron populations 1.22758 0.80893 1.02965 0.99959 1.87970 1.19767 1.27173 1.95409 1.22590 0.91716 0.85718 1.01412 1.22785 0.93499 0.98300 0.86784 1.86110 1.20356 1.77035 1.38704 1.18857 0.82018 0.96180 0.94612 1.21110 0.94333 1.07994 0.99968 1.20821 0.94455 0.97239 0.97324 1.20908 0.99541 1.01496 0.93997 1.19145 0.92212 0.96071 0.94038 1.20840 1.02853 0.98333 0.92751 1.20098 0.78133 0.89404 0.82696 1.90701 1.51988 1.20004 1.78088 1.48176 1.62860 1.07177 1.14554 1.19260 0.96670 0.85636 0.85630 1.21393 0.97235 1.20684 1.17027 0.92559 1.24928 0.97917 0.96095 0.95168 1.69920 1.36049 1.27488 1.19961 0.86582 0.84627 0.78431 0.77912 1.20270 1.21223 1.20211 1.21019 0.95182 0.82309 0.99760 1.22949 1.00844 0.91138 1.03504 1.23062 0.99346 1.03958 0.95957 1.22891 1.02049 0.98842 0.97612 1.20180 0.94991 1.03795 0.96433 0.93854 0.89491 0.94154 0.91202 0.91932 0.91232 0.90458 0.86007 0.86006 0.86041 0.88501 0.88203 0.95006 0.93946 0.92715 0.89499 0.91445 0.87402 0.88834 0.89149 0.89049 0.88771 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.07 10.67 -40.08 -0.43 -4.50 16 3 C 0.06 0.53 6.32 37.16 0.23 0.77 16 4 C 0.06 0.61 5.12 37.16 0.19 0.80 16 5 O -0.31 -4.35 10.10 -24.27 -0.25 -4.59 16 6 C 0.13 1.92 6.69 -39.22 -0.26 1.66 16 7 C -0.22 -2.85 9.04 -39.43 -0.36 -3.20 16 8 C -0.08 -1.08 10.04 -39.60 -0.40 -1.47 16 9 C -0.14 -2.13 9.70 -39.56 -0.38 -2.51 16 10 C -0.01 -0.23 4.37 -104.64 -0.46 -0.68 16 11 C -0.11 -1.66 4.38 -29.03 -0.13 -1.79 16 12 C 0.51 10.73 7.67 -10.99 -0.08 10.65 16 13 O -0.53 -13.74 15.61 5.55 0.09 -13.65 16 14 N -0.60 -12.56 2.46 -175.06 -0.43 -12.99 16 15 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 16 C -0.52 -14.92 9.39 -34.44 -0.32 -15.25 16 17 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 19 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 20 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 C 0.14 2.28 5.49 -4.04 -0.02 2.25 16 25 C -0.16 -2.30 5.95 -90.62 -0.54 -2.83 16 26 C -0.19 -2.06 9.18 -26.73 -0.25 -2.31 16 27 C -0.18 -1.98 10.25 -26.72 -0.27 -2.25 16 28 C -0.14 -2.17 9.64 -39.43 -0.38 -2.55 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.63 7.68 -51.93 -0.40 0.23 16 35 H 0.08 0.64 7.65 -51.93 -0.40 0.24 16 36 H 0.12 1.26 6.30 -52.48 -0.33 0.93 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.10 1.27 7.35 -51.93 -0.38 0.89 16 40 H 0.10 1.33 6.78 -51.93 -0.35 0.98 16 41 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 42 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.09 1.47 8.07 -51.93 -0.42 1.05 16 45 H 0.07 0.90 6.17 -51.93 -0.32 0.58 16 46 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 47 H 0.09 0.93 7.87 -51.93 -0.41 0.52 16 48 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.13 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 424.77 15.07 6.40 6.40 Total: -1.00 -35.65 424.77 -9.77 -45.42 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.43 Total: 2.28 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -2.44 Total: -9.28 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.31 Total: -39.10 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.59 Total: -22.74 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -35.65 -9.77 -45.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435015736.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.100 kcal (2) G-P(sol) polarization free energy of solvation -35.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds