Wall clock time and date at job start Wed Apr 1 2020 04:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47103 * 2 1 4 4 C 1.53000 * 109.46969 * 119.99928 * 2 1 3 5 5 C 1.53004 * 109.46969 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47052 * 300.00281 * 5 4 2 7 7 C 1.52993 * 109.47377 * 59.99737 * 6 5 4 8 8 C 1.53000 * 109.47569 * 300.00208 * 7 6 5 9 9 H 1.09006 * 109.47025 * 300.00308 * 8 7 6 10 10 O 1.42894 * 109.47398 * 180.02562 * 8 7 6 11 11 C 1.42894 * 113.99963 * 89.99840 * 10 8 7 12 12 C 1.53007 * 109.46849 * 180.02562 * 11 10 8 13 13 N 1.46493 * 109.47241 * 64.99928 * 12 11 10 14 14 S 1.65602 * 120.00038 * 164.99732 * 13 12 11 15 15 O 1.42098 * 104.27791 * 308.93105 * 14 13 12 16 16 O 1.42096 * 104.27818 * 181.07144 * 14 13 12 17 17 C 1.81397 * 104.44923 * 65.00353 * 14 13 12 18 18 C 1.52996 * 109.47271 * 179.97438 * 17 14 13 19 19 C 1.52994 * 109.47469 * 299.99748 * 18 17 14 20 20 C 1.52997 * 109.47006 * 60.00222 * 18 17 14 21 21 C 1.50705 * 109.47206 * 179.97438 * 18 17 14 22 22 H 1.08002 * 119.99943 * 0.84269 * 21 18 17 23 23 C 1.37871 * 120.00026 * 180.83614 * 21 18 17 24 24 N 1.31521 * 120.00322 * 194.58315 * 23 21 18 25 25 Si 1.86801 * 120.00214 * 14.58320 * 23 21 18 26 26 H 1.48499 * 109.47142 * 84.45225 * 25 23 21 27 27 H 1.48503 * 109.47199 * 204.45706 * 25 23 21 28 28 H 1.48502 * 109.46705 * 324.45208 * 25 23 21 29 29 H 1.08999 * 109.47103 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46995 * 300.00178 * 1 2 3 31 31 H 1.09005 * 109.46904 * 59.99898 * 1 2 3 32 32 H 1.09000 * 109.47176 * 299.99783 * 4 2 1 33 33 H 1.08999 * 109.47150 * 60.00100 * 4 2 1 34 34 H 1.08999 * 109.47103 * 60.00072 * 5 4 2 35 35 H 1.08993 * 109.46976 * 179.97438 * 5 4 2 36 36 H 1.09004 * 109.46713 * 180.02562 * 6 5 4 37 37 H 1.09006 * 109.46622 * 299.99794 * 6 5 4 38 38 H 1.08997 * 109.47200 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.46961 * 60.00098 * 7 6 5 40 40 H 1.09003 * 109.47352 * 60.00448 * 11 10 8 41 41 H 1.08997 * 109.47221 * 299.99420 * 11 10 8 42 42 H 1.08999 * 109.47315 * 304.99765 * 12 11 10 43 43 H 1.09005 * 109.47114 * 185.00135 * 12 11 10 44 44 H 0.97005 * 119.99941 * 345.00401 * 13 12 11 45 45 H 1.09006 * 109.47497 * 59.99572 * 17 14 13 46 46 H 1.09004 * 109.47302 * 300.00113 * 17 14 13 47 47 H 1.09002 * 109.46871 * 70.22928 * 19 18 17 48 48 H 1.08997 * 109.46981 * 310.23404 * 19 18 17 49 49 H 1.08997 * 109.47376 * 190.23018 * 19 18 17 50 50 H 1.09006 * 109.47037 * 299.99854 * 20 18 17 51 51 H 1.08999 * 109.47925 * 59.99984 * 20 18 17 52 52 H 1.09001 * 109.47128 * 179.97438 * 20 18 17 53 53 H 0.96998 * 120.00317 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2489 6 6 4.0795 -1.4434 -0.0003 7 6 3.5695 -0.7222 -1.2495 8 6 2.0395 -0.7216 -1.2493 9 1 1.6758 -1.7492 -1.2490 10 8 1.5632 -0.0485 -2.4163 11 6 1.3689 -0.9057 -3.5430 12 6 0.8612 -0.0824 -4.7285 13 7 1.8951 0.8703 -5.1400 14 16 1.7852 1.6288 -6.6080 15 8 1.5774 0.5713 -7.5342 16 8 2.9501 2.4400 -6.6715 17 6 0.2984 2.6595 -6.4747 18 6 0.0865 3.4208 -7.7848 19 6 1.3005 4.3102 -8.0600 20 6 -0.0857 2.4234 -8.9321 21 6 -1.1491 4.2766 -7.6742 22 1 -1.7179 4.2878 -6.7562 23 6 -1.5533 5.0453 -8.7450 24 7 -2.4434 5.9979 -8.5719 25 14 -0.8366 4.7339 -10.4418 26 1 -1.5942 3.6434 -11.1065 27 1 -0.9348 5.9723 -11.2555 28 1 0.5889 4.3387 -10.3120 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6767 -0.2074 2.1392 33 1 1.6767 -1.7489 1.2493 34 1 3.9337 0.3057 1.2487 35 1 3.9333 -1.2352 2.1391 36 1 5.1695 -1.4441 -0.0003 37 1 3.7158 -2.4710 0.0000 38 1 3.9328 -1.2360 -2.1395 39 1 3.9332 0.3053 -1.2498 40 1 0.6368 -1.6736 -3.2934 41 1 2.3150 -1.3778 -3.8077 42 1 -0.0373 0.4606 -4.4356 43 1 0.6286 -0.7479 -5.5600 44 1 2.6443 1.0568 -4.5527 45 1 0.4211 3.3703 -5.6575 46 1 -0.5666 2.0259 -6.2782 47 1 2.1562 3.6869 -8.3194 48 1 1.5328 4.8937 -7.1691 49 1 1.0774 4.9837 -8.8875 50 1 0.8078 1.8041 -9.0123 51 1 -0.9506 1.7897 -8.7362 52 1 -0.2371 2.9658 -9.8654 53 1 -2.7275 6.5390 -9.3252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451052513.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:48 Heat of formation + Delta-G solvation = -155.603252 kcal Electronic energy + Delta-G solvation = -30185.935096 eV Core-core repulsion = 26183.492053 eV Total energy + Delta-G solvation = -4002.443043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.196 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.41591 -38.49510 -38.19666 -37.88440 -36.93450 -35.76857 -34.04021 -33.45202 -31.03654 -29.37596 -28.93421 -28.14502 -27.08802 -26.98919 -23.89207 -23.01681 -22.15685 -21.64682 -20.75487 -20.22794 -18.86269 -18.12666 -17.85367 -17.62399 -17.19138 -16.85122 -16.32069 -16.24834 -15.66652 -15.27685 -15.17818 -15.03676 -14.96858 -14.78686 -14.67700 -14.38101 -14.16043 -14.06919 -13.76491 -13.70700 -13.36844 -13.21590 -13.05162 -13.04245 -12.76842 -12.72490 -12.65997 -12.57282 -12.39757 -12.24369 -11.99767 -11.92884 -11.85136 -11.79270 -11.73717 -11.44188 -11.22473 -11.11985 -10.97892 -10.68184 -10.54837 -10.28859 -10.24851 -8.34663 -6.34115 -0.63578 1.30431 1.35239 1.43319 1.86045 2.29820 2.68133 2.79805 2.99602 3.29528 3.69994 3.75523 3.80949 3.93939 4.03100 4.06453 4.18369 4.25227 4.27236 4.28833 4.33891 4.47396 4.51618 4.53847 4.56765 4.58029 4.61105 4.62617 4.69964 4.74235 4.78402 4.82291 4.95229 4.95510 5.01576 5.03254 5.10353 5.16403 5.18458 5.20377 5.30281 5.33970 5.39141 5.40638 5.46220 5.53437 5.56438 5.63461 6.11933 6.26923 6.37563 6.68885 7.30186 8.81263 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.002444 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.758521 B =11452.896951 C =12089.356746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.062 0.938 4 C -0.108 4.108 5 C -0.123 4.123 6 C -0.114 4.114 7 C -0.144 4.144 8 C 0.094 3.906 9 H 0.071 0.929 10 O -0.394 6.394 11 C 0.057 3.943 12 C 0.105 3.895 13 N -1.110 6.110 14 S 2.619 3.381 15 O -0.983 6.983 16 O -0.990 6.990 17 C -0.584 4.584 18 C 0.044 3.956 19 C -0.176 4.176 20 C -0.186 4.186 21 C -0.503 4.503 22 H 0.049 0.951 23 C 0.025 3.975 24 N -0.937 5.937 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.306 1.306 28 H -0.222 1.222 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.423 0.577 45 H 0.135 0.865 46 H 0.141 0.859 47 H 0.051 0.949 48 H 0.062 0.938 49 H 0.056 0.944 50 H 0.065 0.935 51 H 0.072 0.928 52 H 0.043 0.957 53 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.658 -19.209 19.505 29.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.160 4.160 6 C -0.152 4.152 7 C -0.182 4.182 8 C 0.036 3.964 9 H 0.089 0.911 10 O -0.313 6.313 11 C -0.021 4.021 12 C -0.021 4.021 13 N -0.871 5.871 14 S 2.715 3.285 15 O -0.973 6.973 16 O -0.980 6.980 17 C -0.716 4.716 18 C 0.042 3.958 19 C -0.233 4.233 20 C -0.243 4.243 21 C -0.542 4.542 22 H 0.067 0.933 23 C -0.174 4.174 24 N -0.576 5.576 25 Si 0.748 3.252 26 H -0.201 1.201 27 H -0.235 1.235 28 H -0.146 1.146 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.119 0.881 44 H 0.259 0.741 45 H 0.154 0.846 46 H 0.160 0.840 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.061 0.939 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.979 -19.069 18.610 28.819 hybrid contribution -0.419 0.660 -0.403 0.879 sum 10.560 -18.410 18.207 27.963 Atomic orbital electron populations 1.21754 0.94649 1.01979 1.01738 1.21205 0.96200 0.99747 0.93576 0.91922 1.21566 0.95564 1.00920 0.96546 1.21582 0.95506 1.00793 0.98136 1.21480 1.00728 0.99421 0.93543 1.22064 0.95764 1.01383 0.98987 1.22232 0.93150 0.96090 0.84908 0.91124 1.87926 1.86715 1.36194 1.20497 1.22768 1.01279 0.92726 0.85357 1.21655 0.90625 0.92236 0.97561 1.55274 1.35687 1.57468 1.38712 1.04563 0.76205 0.74519 0.73260 1.93511 1.87232 1.54705 1.61807 1.93527 1.47219 1.71208 1.86032 1.30394 1.20391 1.14061 1.06738 1.18212 0.95235 0.92745 0.89633 1.22698 0.96941 1.01083 1.02603 1.22840 1.02986 0.99423 0.99043 1.20936 1.09150 1.24150 0.99923 0.93308 1.25692 0.95375 0.93767 1.02568 1.70061 1.34777 1.20181 1.32543 0.86692 0.81961 0.76072 0.80510 1.20069 1.23521 1.14618 0.92207 0.92404 0.93169 0.91007 0.91103 0.92471 0.90775 0.91346 0.91207 0.91745 0.92257 0.89646 0.91845 0.90017 0.88092 0.74105 0.84646 0.84034 0.93025 0.91902 0.92487 0.91628 0.90893 0.93865 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.05 71.98 0.65 -1.40 16 2 C -0.09 -1.25 2.46 -10.79 -0.03 -1.28 16 3 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 4 C -0.11 -1.12 5.20 30.60 0.16 -0.96 16 5 C -0.12 -1.23 5.92 30.60 0.18 -1.05 16 6 C -0.11 -1.18 5.92 30.59 0.18 -1.00 16 7 C -0.14 -1.97 5.54 30.59 0.17 -1.80 16 8 C 0.09 1.34 2.04 30.59 0.06 1.41 16 9 H 0.07 0.84 7.79 -2.38 -0.02 0.83 16 10 O -0.39 -7.12 9.12 -148.98 -1.36 -8.48 16 11 C 0.06 0.85 5.94 71.98 0.43 1.28 16 12 C 0.10 1.99 6.52 86.38 0.56 2.55 16 13 N -1.11 -26.35 5.85 -187.49 -1.10 -27.45 16 14 S 2.62 84.87 4.50 -56.49 -0.25 84.61 16 15 O -0.98 -35.29 15.12 -127.65 -1.93 -37.22 16 16 O -0.99 -37.38 15.92 -127.65 -2.03 -39.41 16 17 C -0.58 -20.70 4.99 71.98 0.36 -20.34 16 18 C 0.04 1.98 0.52 -52.93 -0.03 1.96 16 19 C -0.18 -7.80 6.95 71.98 0.50 -7.30 16 20 C -0.19 -8.00 7.22 71.98 0.52 -7.48 16 21 C -0.50 -27.38 8.62 25.60 0.22 -27.16 16 22 H 0.05 2.87 7.99 -2.91 -0.02 2.85 16 23 C 0.02 1.40 5.31 84.65 0.45 1.85 16 24 N -0.94 -57.41 13.96 21.45 0.30 -57.11 16 25 Si 0.92 44.28 22.79 68.60 1.56 45.84 16 26 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 27 H -0.31 -14.91 7.11 99.48 0.71 -14.20 16 28 H -0.22 -9.77 4.67 99.48 0.46 -9.31 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.88 7.68 -2.38 -0.02 0.86 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.06 0.86 7.87 -2.39 -0.02 0.84 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 0.92 8.08 -2.39 -0.02 0.90 16 41 H 0.06 0.88 7.87 -2.39 -0.02 0.86 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.10 1.78 7.69 -2.38 -0.02 1.77 16 44 H 0.42 9.20 8.47 -96.74 -0.82 8.38 16 45 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 46 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16 47 H 0.05 2.12 6.21 -2.39 -0.01 2.11 16 48 H 0.06 2.67 8.11 -2.39 -0.02 2.65 16 49 H 0.06 2.60 4.32 -2.39 -0.01 2.59 16 50 H 0.07 2.60 5.47 -2.38 -0.01 2.59 16 51 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 52 H 0.04 1.91 2.28 -2.39 -0.01 1.91 16 53 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -70.72 400.46 -0.60 -71.32 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -0.18 Total: 28.62 kcal Atomic # 6 Polarization: -65.11 SS G_CDS: 4.39 Total: -60.72 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -0.80 Total: -84.56 kcal Atomic # 8 Polarization: -79.79 SS G_CDS: -5.32 Total: -85.11 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.56 Total: 45.84 kcal Atomic # 16 Polarization: 84.87 SS G_CDS: -0.25 Total: 84.61 kcal Total: -70.72 -0.60 -71.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451052513.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.279 kcal (2) G-P(sol) polarization free energy of solvation -70.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds