Wall clock time and date at job start Wed Apr 1 2020 04:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46921 * 2 1 4 4 O 1.42896 * 109.47082 * 119.99712 * 2 1 3 5 5 C 1.42909 * 113.99509 * 149.99854 * 4 2 1 6 6 H 1.09000 * 112.90648 * 341.25638 * 5 4 2 7 7 C 1.53959 * 113.66080 * 112.55237 * 5 4 2 8 8 C 1.53782 * 87.10847 * 139.89248 * 7 5 4 9 9 H 1.09002 * 113.69140 * 89.19872 * 8 7 5 10 10 N 1.46498 * 113.61398 * 220.08950 * 8 7 5 11 11 S 1.65594 * 120.00326 * 242.49581 * 10 8 7 12 12 O 1.42098 * 104.28103 * 181.07040 * 11 10 8 13 13 O 1.42103 * 104.27813 * 308.93234 * 11 10 8 14 14 C 1.81406 * 104.44961 * 64.99819 * 11 10 8 15 15 C 1.52997 * 109.47100 * 180.02562 * 14 11 10 16 16 C 1.53003 * 109.47208 * 299.99597 * 15 14 11 17 17 C 1.53002 * 109.47383 * 60.00226 * 15 14 11 18 18 C 1.50702 * 109.46918 * 180.02562 * 15 14 11 19 19 H 1.07998 * 119.99931 * 0.83805 * 18 15 14 20 20 C 1.37881 * 120.00111 * 180.83167 * 18 15 14 21 21 N 1.31516 * 120.00070 * 194.57762 * 20 18 15 22 22 Si 1.86797 * 119.99782 * 14.58402 * 20 18 15 23 23 H 1.48499 * 109.47680 * 84.45127 * 22 20 18 24 24 H 1.48501 * 109.47002 * 204.45386 * 22 20 18 25 25 H 1.48501 * 109.47171 * 324.44881 * 22 20 18 26 26 C 1.53780 * 87.08203 * 334.63572 * 8 7 5 27 27 C 1.52998 * 113.61443 * 139.98092 * 26 8 7 28 28 C 1.52994 * 113.61750 * 270.80387 * 26 8 7 29 29 H 1.09001 * 109.46765 * 299.99970 * 1 2 3 30 30 H 1.08994 * 109.47233 * 59.99825 * 1 2 3 31 31 H 1.09000 * 109.47159 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46765 * 240.00030 * 2 1 3 33 33 H 1.09000 * 109.47029 * 59.99992 * 3 2 1 34 34 H 1.09000 * 109.47180 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47155 * 300.00599 * 3 2 1 36 36 H 1.09002 * 113.54194 * 25.34195 * 7 5 4 37 37 H 1.08999 * 113.74063 * 254.46613 * 7 5 4 38 38 H 0.97006 * 120.00308 * 62.49692 * 10 8 7 39 39 H 1.09006 * 109.46964 * 300.00482 * 14 11 10 40 40 H 1.08998 * 109.46912 * 60.00292 * 14 11 10 41 41 H 1.08998 * 109.46577 * 70.23560 * 16 15 14 42 42 H 1.08994 * 109.47312 * 190.23450 * 16 15 14 43 43 H 1.08997 * 109.46871 * 310.23956 * 16 15 14 44 44 H 1.08994 * 109.46883 * 59.99916 * 17 15 14 45 45 H 1.08997 * 109.46814 * 180.02562 * 17 15 14 46 46 H 1.09000 * 109.46816 * 299.99388 * 17 15 14 47 47 H 0.96997 * 119.99678 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.47372 * 181.53357 * 27 26 8 49 49 H 1.09001 * 109.47426 * 61.53142 * 27 26 8 50 50 H 1.08999 * 109.47060 * 301.53179 * 27 26 8 51 51 H 1.09003 * 109.47126 * 298.46585 * 28 26 8 52 52 H 1.09002 * 109.47124 * 58.46614 * 28 26 8 53 53 H 1.08996 * 109.47486 * 178.47154 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2661 -1.3244 0.9885 6 1 3.5141 -1.4887 -0.0601 7 6 4.4098 -0.6900 1.8007 8 6 4.8963 -2.1206 2.0862 9 1 5.5911 -2.5042 1.3391 10 7 5.3711 -2.3162 3.4582 11 16 6.9495 -2.7327 3.7368 12 8 7.0348 -2.8580 5.1496 13 8 7.1722 -3.8499 2.8873 14 6 7.9034 -1.2992 3.1660 15 6 9.3959 -1.5648 3.3725 16 6 9.6711 -1.8014 4.8588 17 6 9.8089 -2.8029 2.5739 18 6 10.1884 -0.3737 2.8989 19 1 9.6778 0.4922 2.5040 20 6 11.5653 -0.3892 2.9699 21 7 12.2434 0.7295 2.8343 22 14 12.4675 -1.9992 3.2586 23 1 12.6569 -2.6998 1.9630 24 1 13.7922 -1.7215 3.8695 25 1 11.6706 -2.8561 4.1729 26 6 3.4434 -2.5743 1.8667 27 6 3.3220 -3.8889 1.0934 28 6 2.5958 -2.5537 3.1403 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 4.0698 -0.1588 2.6898 37 1 5.1042 -0.1049 1.1977 38 1 4.7610 -2.2016 4.2037 39 1 7.7077 -1.1308 2.1070 40 1 7.6090 -0.4171 3.7347 41 1 9.2473 -2.7599 5.1586 42 1 10.7471 -1.8098 5.0324 43 1 9.2147 -1.0033 5.4443 44 1 9.6129 -2.6342 1.5151 45 1 10.8721 -2.9923 2.7214 46 1 9.2358 -3.6642 2.9169 47 1 13.2120 0.7184 2.8839 48 1 2.2688 -4.1320 0.9531 49 1 3.8074 -4.6870 1.6551 50 1 3.8034 -3.7842 0.1211 51 1 3.0212 -3.2417 3.8710 52 1 2.5856 -1.5452 3.5537 53 1 1.5768 -2.8598 2.9036 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451406829.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:40 Heat of formation + Delta-G solvation = -117.545859 kcal Electronic energy + Delta-G solvation = -31035.090164 eV Core-core repulsion = 27034.297413 eV Total energy + Delta-G solvation = -4000.792751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.196 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.32986 -38.50239 -38.34173 -38.07068 -36.93434 -34.32625 -34.03567 -32.91250 -31.28141 -28.98982 -28.32752 -28.15218 -28.02240 -27.09277 -24.95579 -23.45341 -22.15565 -21.65693 -20.25737 -19.96652 -18.83353 -18.12413 -17.84466 -17.31856 -16.92259 -16.81585 -16.27989 -16.02639 -15.88030 -15.32374 -15.11419 -14.97832 -14.78270 -14.45313 -14.25921 -14.16544 -14.09204 -13.94745 -13.66911 -13.23974 -13.18332 -13.12079 -13.06440 -13.03581 -12.86131 -12.82857 -12.71936 -12.66941 -12.59681 -12.54008 -12.38508 -12.00392 -11.89379 -11.85932 -11.80412 -11.65334 -11.46663 -11.30195 -10.94534 -10.68753 -10.50914 -10.21243 -10.14755 -8.35069 -6.34294 -0.65596 1.29833 1.35149 1.42735 1.82016 2.29423 2.76714 2.83219 2.99408 3.27251 3.39696 3.53686 3.74597 3.81548 3.84738 4.05217 4.07469 4.19075 4.22941 4.25231 4.34730 4.35722 4.44038 4.51594 4.59716 4.62822 4.68726 4.69249 4.78570 4.80036 4.84603 4.94384 4.95044 4.98718 5.00561 5.01892 5.05247 5.12333 5.14880 5.16775 5.29418 5.35480 5.38355 5.39059 5.46555 5.52483 5.54549 5.63024 6.08339 6.26563 6.47823 6.68822 7.30124 8.80782 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.003078 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.075156 B = 9095.214434 C =10073.032491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 C -0.174 4.174 4 O -0.372 6.372 5 C 0.078 3.922 6 H 0.105 0.895 7 C -0.172 4.172 8 C 0.120 3.880 9 H 0.121 0.879 10 N -1.095 6.095 11 S 2.613 3.387 12 O -0.989 6.989 13 O -0.982 6.982 14 C -0.582 4.582 15 C 0.045 3.955 16 C -0.176 4.176 17 C -0.187 4.187 18 C -0.502 4.502 19 H 0.051 0.949 20 C 0.026 3.974 21 N -0.936 5.936 22 Si 0.916 3.084 23 H -0.274 1.274 24 H -0.307 1.307 25 H -0.223 1.223 26 C -0.082 4.082 27 C -0.141 4.141 28 C -0.121 4.121 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.423 0.577 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.064 0.936 47 H 0.266 0.734 48 H 0.068 0.932 49 H 0.053 0.947 50 H 0.066 0.934 51 H 0.056 0.944 52 H 0.061 0.939 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.624 -4.429 -6.078 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 C -0.232 4.232 4 O -0.291 6.291 5 C 0.019 3.981 6 H 0.123 0.877 7 C -0.212 4.212 8 C 0.012 3.988 9 H 0.139 0.861 10 N -0.854 5.854 11 S 2.709 3.291 12 O -0.980 6.980 13 O -0.972 6.972 14 C -0.713 4.713 15 C 0.043 3.957 16 C -0.234 4.234 17 C -0.244 4.244 18 C -0.541 4.541 19 H 0.069 0.931 20 C -0.172 4.172 21 N -0.575 5.575 22 Si 0.746 3.254 23 H -0.201 1.201 24 H -0.235 1.235 25 H -0.147 1.147 26 C -0.085 4.085 27 C -0.198 4.198 28 C -0.178 4.178 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.260 0.740 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.085 0.915 51 H 0.075 0.925 52 H 0.081 0.919 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.177 -5.215 -5.658 25.372 hybrid contribution 1.049 0.539 -0.061 1.180 sum -23.128 -4.677 -5.719 24.279 Atomic orbital electron populations 1.21859 0.93085 1.02640 1.02839 1.22346 0.95479 0.92652 0.88001 1.22321 1.01402 0.96784 1.02664 1.87960 1.35815 1.69189 1.36094 1.23716 0.83582 0.92128 0.98671 0.87723 1.24102 0.98407 0.96625 1.02045 1.22391 0.96582 0.97316 0.82534 0.86085 1.55280 1.27912 1.88225 1.14029 1.04752 0.73883 0.76867 0.73602 1.93531 1.86003 1.87052 1.31382 1.93521 1.85004 1.49121 1.69523 1.30403 1.07831 1.19583 1.13526 1.18201 0.90070 0.94538 0.92892 1.22707 1.02538 1.00769 0.97374 1.22848 1.00972 0.98014 1.02546 1.20934 0.90999 1.00467 1.41713 0.93111 1.25663 0.98602 0.98537 0.94435 1.70054 1.07810 1.27960 1.51657 0.86726 0.76889 0.82031 0.79791 1.20107 1.23549 1.14701 1.22509 0.93671 0.95148 0.97126 1.21799 1.02545 0.95566 0.99912 1.21366 0.99198 1.02122 0.95135 0.92552 0.89923 0.92169 0.91239 0.92654 0.92864 0.90608 0.88555 0.89764 0.73965 0.84041 0.84381 0.93171 0.92506 0.91781 0.90883 0.93874 0.91734 0.92501 0.91328 0.92797 0.91457 0.92460 0.91950 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.56 71.98 0.69 -0.93 16 2 C 0.07 0.96 3.33 30.60 0.10 1.06 16 3 C -0.17 -2.28 9.53 71.98 0.69 -1.60 16 4 O -0.37 -6.30 9.12 -148.98 -1.36 -7.65 16 5 C 0.08 1.23 3.69 31.18 0.12 1.35 16 6 H 0.11 1.35 7.30 -2.39 -0.02 1.33 16 7 C -0.17 -3.05 7.37 31.18 0.23 -2.82 16 8 C 0.12 2.39 3.77 45.52 0.17 2.57 16 9 H 0.12 2.40 7.72 -2.39 -0.02 2.38 16 10 N -1.09 -25.41 5.44 -167.20 -0.91 -26.32 16 11 S 2.61 83.53 4.47 -56.49 -0.25 83.28 16 12 O -0.99 -36.79 15.93 -127.65 -2.03 -38.83 16 13 O -0.98 -35.25 15.20 -127.65 -1.94 -37.19 16 14 C -0.58 -20.05 4.99 71.98 0.36 -19.69 16 15 C 0.05 2.01 0.52 -52.93 -0.03 1.98 16 16 C -0.18 -7.73 6.95 71.98 0.50 -7.23 16 17 C -0.19 -7.96 7.22 71.98 0.52 -7.44 16 18 C -0.50 -26.89 8.62 25.60 0.22 -26.67 16 19 H 0.05 2.92 7.99 -2.91 -0.02 2.90 16 20 C 0.03 1.48 5.31 84.66 0.45 1.93 16 21 N -0.94 -56.73 13.96 21.45 0.30 -56.43 16 22 Si 0.92 43.87 22.79 68.60 1.56 45.44 16 23 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.31 -14.85 7.11 99.48 0.71 -14.14 16 25 H -0.22 -9.76 4.67 99.48 0.46 -9.29 16 26 C -0.08 -1.42 1.34 -51.66 -0.07 -1.49 16 27 C -0.14 -2.27 9.18 71.98 0.66 -1.61 16 28 C -0.12 -2.05 7.31 71.98 0.53 -1.52 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.78 7.42 -2.39 -0.02 0.76 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.10 1.76 7.64 -2.39 -0.02 1.74 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.42 8.51 7.15 -96.74 -0.69 7.81 16 39 H 0.14 4.28 8.14 -2.39 -0.02 4.26 16 40 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16 41 H 0.05 2.04 6.21 -2.39 -0.01 2.03 16 42 H 0.06 2.57 4.32 -2.39 -0.01 2.56 16 43 H 0.06 2.67 8.11 -2.39 -0.02 2.65 16 44 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 45 H 0.04 1.90 2.28 -2.39 -0.01 1.89 16 46 H 0.06 2.55 5.46 -2.39 -0.01 2.54 16 47 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 48 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.07 0.95 7.98 -2.39 -0.02 0.93 16 51 H 0.06 0.97 7.39 -2.39 -0.02 0.95 16 52 H 0.06 1.07 7.22 -2.39 -0.02 1.05 16 53 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -69.57 402.81 0.45 -69.12 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -0.05 Total: 30.70 kcal Atomic # 6 Polarization: -67.25 SS G_CDS: 5.13 Total: -62.12 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -0.61 Total: -82.75 kcal Atomic # 8 Polarization: -78.33 SS G_CDS: -5.33 Total: -83.67 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.56 Total: 45.44 kcal Atomic # 16 Polarization: 83.53 SS G_CDS: -0.25 Total: 83.28 kcal Total: -69.57 0.45 -69.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451406829.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.423 kcal (2) G-P(sol) polarization free energy of solvation -69.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds