Wall clock time and date at job start Wed Apr 1 2020 04:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47123 * 2 1 4 4 O 1.42908 * 109.46826 * 119.99821 * 2 1 3 5 5 C 1.42903 * 113.99861 * 90.00080 * 4 2 1 6 6 H 1.09002 * 112.84873 * 341.19536 * 5 4 2 7 7 C 1.53782 * 113.69085 * 112.46095 * 5 4 2 8 8 C 1.53778 * 87.08156 * 139.99203 * 7 5 4 9 9 H 1.09001 * 113.69075 * 220.01588 * 8 7 5 10 10 N 1.46493 * 113.61502 * 89.11440 * 8 7 5 11 11 S 1.65608 * 119.99916 * 117.50348 * 10 8 7 12 12 O 1.42102 * 104.27862 * 180.79934 * 11 10 8 13 13 O 1.42098 * 104.27532 * 308.65568 * 11 10 8 14 14 C 1.81401 * 104.44690 * 64.72499 * 11 10 8 15 15 C 1.53001 * 109.46754 * 179.97438 * 14 11 10 16 16 C 1.53000 * 109.47549 * 300.00332 * 15 14 11 17 17 C 1.53004 * 109.47082 * 60.00353 * 15 14 11 18 18 C 1.50697 * 109.47001 * 180.02562 * 15 14 11 19 19 H 1.08003 * 120.00274 * 0.02562 * 18 15 14 20 20 C 1.37881 * 120.00441 * 180.02562 * 18 15 14 21 21 N 1.31515 * 119.99465 * 0.02562 * 20 18 15 22 22 Si 1.86793 * 120.00203 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47360 * 90.00206 * 22 20 18 24 24 H 1.48501 * 109.47012 * 210.00184 * 22 20 18 25 25 H 1.48503 * 109.47189 * 329.99872 * 22 20 18 26 26 C 1.53776 * 113.61196 * 209.99636 * 5 4 2 27 27 C 1.53000 * 113.61165 * 105.39003 * 26 5 4 28 28 C 1.52996 * 113.69497 * 334.49515 * 26 5 4 29 29 H 1.08997 * 109.47232 * 59.99935 * 1 2 3 30 30 H 1.09000 * 109.47297 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47086 * 300.00113 * 1 2 3 32 32 H 1.09000 * 109.47086 * 239.99887 * 2 1 3 33 33 H 1.09003 * 109.47040 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47120 * 300.00134 * 3 2 1 35 35 H 1.09000 * 109.47231 * 59.99976 * 3 2 1 36 36 H 1.09000 * 113.61391 * 25.44503 * 7 5 4 37 37 H 1.08998 * 113.61590 * 254.54563 * 7 5 4 38 38 H 0.97000 * 120.00740 * 297.23010 * 10 8 7 39 39 H 1.08996 * 109.47201 * 299.99843 * 14 11 10 40 40 H 1.08997 * 109.46951 * 60.00554 * 14 11 10 41 41 H 1.08994 * 109.46866 * 59.99963 * 16 15 14 42 42 H 1.09002 * 109.46792 * 180.02562 * 16 15 14 43 43 H 1.08996 * 109.46612 * 300.00268 * 16 15 14 44 44 H 1.09010 * 109.46813 * 59.99735 * 17 15 14 45 45 H 1.08992 * 109.47231 * 179.97438 * 17 15 14 46 46 H 1.08994 * 109.47222 * 299.99969 * 17 15 14 47 47 H 0.96997 * 120.00035 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.47082 * 157.49495 * 27 26 5 49 49 H 1.08999 * 109.47292 * 277.49013 * 27 26 5 50 50 H 1.08993 * 109.47728 * 37.49324 * 27 26 5 51 51 H 1.08999 * 109.47062 * 322.46571 * 28 26 5 52 52 H 1.09003 * 109.47031 * 82.46128 * 28 26 5 53 53 H 1.09003 * 109.47364 * 202.46602 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 2.2000 -2.0782 0.9887 6 1 1.6626 -2.4737 0.1268 7 6 3.6746 -2.5109 1.0468 8 6 3.2009 -3.7407 1.8393 9 1 3.8617 -4.0124 2.6625 10 7 2.8463 -4.8830 0.9934 11 16 3.6923 -6.3010 1.1197 12 8 3.0927 -7.1541 0.1543 13 8 5.0532 -5.9085 1.0058 14 6 3.3384 -6.8912 2.7981 15 6 4.0719 -8.2121 3.0395 16 6 3.5976 -9.2521 2.0225 17 6 5.5782 -7.9950 2.8823 18 6 3.7774 -8.7027 4.4336 19 1 3.1313 -8.1300 5.0824 20 6 4.3327 -9.8828 4.8809 21 7 5.1198 -10.5800 4.0909 22 14 3.9670 -10.4913 6.6087 23 1 2.7611 -11.3575 6.5836 24 1 5.1256 -11.2703 7.1146 25 1 3.7237 -9.3298 7.5014 26 6 1.9909 -2.8967 2.2737 27 6 0.6753 -3.6775 2.2956 28 6 2.2295 -2.0983 3.5568 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 4.3054 -1.8355 1.6248 37 1 4.0966 -2.7555 0.0721 38 1 2.1135 -4.8101 0.3621 39 1 3.6759 -6.1501 3.5226 40 1 2.2653 -7.0463 2.9100 41 1 3.8103 -8.8974 1.0141 42 1 4.1199 -10.1932 2.1948 43 1 2.5245 -9.4067 2.1345 44 1 5.9161 -7.2540 3.6069 45 1 6.1008 -8.9359 3.0546 46 1 5.7909 -7.6403 1.8738 47 1 5.5108 -11.4100 4.4057 48 1 0.7587 -4.5102 2.9940 49 1 -0.1333 -3.0182 2.6112 50 1 0.4633 -4.0604 1.2974 51 1 3.0662 -1.4155 3.4096 52 1 1.3336 -1.5277 3.8015 53 1 2.4585 -2.7830 4.3735 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451406832.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:48 Heat of formation + Delta-G solvation = -131.852740 kcal Electronic energy + Delta-G solvation = -31008.281640 eV Core-core repulsion = 27006.868497 eV Total energy + Delta-G solvation = -4001.413144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.196 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.40607 -38.34897 -38.11714 -38.05385 -36.88836 -34.26373 -33.62076 -32.95205 -31.13782 -28.37613 -28.20378 -27.99034 -27.68330 -27.24079 -25.26111 -23.46228 -22.13044 -21.40133 -20.31335 -19.88483 -18.79123 -17.90730 -17.69453 -17.04732 -16.88090 -16.60464 -16.22708 -16.12003 -15.80969 -15.07953 -14.96821 -14.70416 -14.64840 -14.42419 -14.34417 -14.13619 -13.83252 -13.58533 -13.18289 -13.14349 -13.07487 -13.02367 -13.01613 -12.91490 -12.88320 -12.80429 -12.76784 -12.59725 -12.49420 -12.37624 -12.17312 -12.14428 -11.97872 -11.94973 -11.68945 -11.55486 -11.49025 -11.32182 -11.09119 -10.62509 -10.40732 -10.24063 -10.19647 -8.02149 -6.20462 -0.61345 1.44505 1.46620 1.54957 1.85807 2.44921 2.78120 2.83906 3.20278 3.30778 3.39307 3.54441 3.81386 3.87249 3.99053 4.07826 4.11322 4.18996 4.26742 4.32608 4.35989 4.39115 4.60936 4.63966 4.74980 4.78833 4.86598 4.87680 4.87981 4.94514 4.96319 4.99014 4.99830 5.01005 5.05387 5.09394 5.15756 5.18744 5.25592 5.33764 5.36851 5.40220 5.47070 5.51780 5.58035 5.65973 5.98524 6.08516 6.12949 6.35295 6.45477 6.84584 7.47849 8.97768 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019473 B = 0.002826 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.572093 B = 9905.814333 C =10532.848520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 C -0.147 4.147 4 O -0.373 6.373 5 C 0.077 3.923 6 H 0.094 0.906 7 C -0.167 4.167 8 C 0.123 3.877 9 H 0.107 0.893 10 N -1.092 6.092 11 S 2.614 3.386 12 O -0.992 6.992 13 O -0.989 6.989 14 C -0.584 4.584 15 C 0.071 3.929 16 C -0.161 4.161 17 C -0.161 4.161 18 C -0.515 4.515 19 H 0.064 0.936 20 C 0.017 3.983 21 N -0.909 5.909 22 Si 0.953 3.047 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.266 1.266 26 C -0.080 4.080 27 C -0.141 4.141 28 C -0.118 4.118 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.422 0.578 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.032 0.968 47 H 0.261 0.739 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.062 0.938 51 H 0.062 0.938 52 H 0.066 0.934 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 22.078 -5.870 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.012 3.988 3 C -0.204 4.204 4 O -0.292 6.292 5 C 0.019 3.981 6 H 0.112 0.888 7 C -0.207 4.207 8 C 0.015 3.985 9 H 0.124 0.876 10 N -0.850 5.850 11 S 2.711 3.289 12 O -0.982 6.982 13 O -0.978 6.978 14 C -0.717 4.717 15 C 0.069 3.931 16 C -0.219 4.219 17 C -0.219 4.219 18 C -0.554 4.554 19 H 0.082 0.918 20 C -0.182 4.182 21 N -0.547 5.547 22 Si 0.779 3.221 23 H -0.205 1.205 24 H -0.214 1.214 25 H -0.191 1.191 26 C -0.083 4.083 27 C -0.199 4.199 28 C -0.176 4.176 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.258 0.742 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.081 0.919 51 H 0.081 0.919 52 H 0.085 0.915 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.866 21.633 -6.303 24.214 hybrid contribution -0.527 -0.835 0.855 1.306 sum -9.393 20.798 -5.448 23.462 Atomic orbital electron populations 1.22287 0.95369 1.02312 1.02868 1.22313 0.94175 0.94269 0.88009 1.21851 1.01480 0.94073 1.02988 1.87969 1.85879 1.19437 1.35885 1.23854 0.95190 0.81344 0.97693 0.88842 1.23954 0.98101 0.96978 1.01661 1.21744 0.97909 0.85602 0.93244 0.87553 1.55196 1.51001 1.26886 1.51960 1.04757 0.73703 0.72685 0.77726 1.93511 1.78326 1.66652 1.59749 1.93516 1.35611 1.81803 1.86894 1.30453 1.11198 1.08855 1.21171 1.17899 0.91126 0.87833 0.96253 1.22221 1.00328 1.03288 0.96074 1.22214 0.99036 1.02246 0.98357 1.21296 1.29323 1.06717 0.98046 0.91763 1.25677 0.94884 0.96916 1.00767 1.69945 1.32374 1.15424 1.37004 0.85628 0.77427 0.78414 0.80583 1.20455 1.21396 1.19058 1.22518 0.95022 0.94551 0.96173 1.21758 0.95525 1.00077 1.02518 1.21414 1.02671 0.99202 0.94283 0.90543 0.92764 0.92255 0.92066 0.92531 0.89880 0.92170 0.87795 0.91014 0.74179 0.84515 0.84317 0.94976 0.91103 0.94056 0.94017 0.91136 0.94913 0.92978 0.91909 0.91424 0.91930 0.91937 0.91475 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.53 71.98 0.69 -1.37 16 2 C 0.07 0.98 3.22 30.59 0.10 1.08 16 3 C -0.15 -1.75 9.56 71.98 0.69 -1.06 16 4 O -0.37 -6.70 9.10 -148.98 -1.36 -8.06 16 5 C 0.08 1.36 3.36 31.12 0.10 1.47 16 6 H 0.09 1.47 7.56 -2.39 -0.02 1.45 16 7 C -0.17 -3.39 7.36 31.12 0.23 -3.17 16 8 C 0.12 2.70 3.76 45.52 0.17 2.87 16 9 H 0.11 2.37 7.67 -2.39 -0.02 2.35 16 10 N -1.09 -26.73 4.97 -167.20 -0.83 -27.56 16 11 S 2.61 91.70 4.43 -56.49 -0.25 91.45 16 12 O -0.99 -40.14 15.70 -127.65 -2.00 -42.14 16 13 O -0.99 -40.28 15.44 -127.65 -1.97 -42.25 16 14 C -0.58 -21.33 5.01 71.98 0.36 -20.97 16 15 C 0.07 3.37 0.52 -52.93 -0.03 3.34 16 16 C -0.16 -7.96 7.77 71.98 0.56 -7.40 16 17 C -0.16 -7.91 7.78 71.98 0.56 -7.35 16 18 C -0.51 -26.39 8.01 25.60 0.21 -26.18 16 19 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 20 C 0.02 0.89 5.15 84.66 0.44 1.32 16 21 N -0.91 -50.19 9.35 21.45 0.20 -49.98 16 22 Si 0.95 41.84 29.54 68.60 2.03 43.87 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 26 C -0.08 -1.45 1.34 -51.66 -0.07 -1.52 16 27 C -0.14 -2.36 8.60 71.98 0.62 -1.74 16 28 C -0.12 -2.03 8.46 71.98 0.61 -1.42 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.82 7.73 -2.39 -0.02 0.81 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 2.01 7.66 -2.39 -0.02 1.99 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.42 8.47 7.58 -96.75 -0.73 7.74 16 39 H 0.14 4.40 7.81 -2.39 -0.02 4.38 16 40 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 41 H 0.03 1.51 5.46 -2.39 -0.01 1.50 16 42 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 43 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 46 H 0.03 1.54 5.46 -2.39 -0.01 1.52 16 47 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 48 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.06 0.94 6.83 -2.39 -0.02 0.92 16 51 H 0.06 1.09 7.20 -2.39 -0.02 1.08 16 52 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -66.05 412.42 1.18 -64.87 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.14 Total: 31.90 kcal Atomic # 6 Polarization: -67.33 SS G_CDS: 5.23 Total: -62.10 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -0.63 Total: -77.54 kcal Atomic # 8 Polarization: -87.12 SS G_CDS: -5.33 Total: -92.45 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 91.70 SS G_CDS: -0.25 Total: 91.45 kcal Total: -66.05 1.18 -64.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451406832.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.983 kcal (2) G-P(sol) polarization free energy of solvation -66.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds