Wall clock time and date at job start Wed Apr 1 2020 04:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00639 * 2 1 4 4 C 1.52994 * 109.47487 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46882 * 68.83679 * 4 3 2 6 6 C 1.46493 * 119.99985 * 88.45263 * 5 4 3 7 7 H 1.09009 * 110.67268 * 183.54115 * 6 5 4 8 8 C 1.54886 * 110.75969 * 60.10370 * 6 5 4 9 9 C 1.54259 * 104.20096 * 203.74182 * 8 6 5 10 10 C 1.53880 * 106.59815 * 23.60722 * 9 8 6 11 11 H 1.08999 * 110.07467 * 240.69491 * 10 9 8 12 12 C 1.52997 * 110.03075 * 119.28510 * 10 9 8 13 13 C 1.54263 * 106.59537 * 0.02562 * 10 9 8 14 14 S 1.65598 * 119.99689 * 268.44850 * 5 4 3 15 15 O 1.42105 * 104.27579 * 206.07062 * 14 5 4 16 16 O 1.42102 * 104.28126 * 333.93146 * 14 5 4 17 17 C 1.81401 * 104.44657 * 90.00244 * 14 5 4 18 18 C 1.53003 * 109.47183 * 179.97438 * 17 14 5 19 19 C 1.52994 * 109.47470 * 300.00325 * 18 17 14 20 20 C 1.53007 * 109.46749 * 60.00055 * 18 17 14 21 21 C 1.50693 * 109.47315 * 179.97438 * 18 17 14 22 22 H 1.07995 * 119.99985 * 0.02562 * 21 18 17 23 23 C 1.37878 * 120.00264 * 180.02562 * 21 18 17 24 24 N 1.31519 * 119.99738 * 359.97438 * 23 21 18 25 25 Si 1.86800 * 120.00337 * 180.02562 * 23 21 18 26 26 H 1.48495 * 109.47062 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47155 * 119.99989 * 25 23 21 28 28 H 1.48506 * 109.46889 * 239.99915 * 25 23 21 29 29 H 1.09004 * 109.46956 * 299.99739 * 1 2 3 30 30 H 1.08997 * 109.47165 * 59.99429 * 1 2 3 31 31 H 1.08999 * 109.47558 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46909 * 60.00148 * 3 2 1 33 33 H 1.08997 * 109.46664 * 300.00424 * 3 2 1 34 34 H 1.09001 * 109.47130 * 188.83418 * 4 3 2 35 35 H 1.09000 * 109.47458 * 308.83766 * 4 3 2 36 36 H 1.08995 * 110.48927 * 322.42491 * 8 6 5 37 37 H 1.09005 * 110.48460 * 85.06168 * 8 6 5 38 38 H 1.08999 * 110.03588 * 264.32989 * 9 8 6 39 39 H 1.08997 * 110.07781 * 142.91609 * 9 8 6 40 40 H 1.09003 * 109.47482 * 302.83628 * 12 10 9 41 41 H 1.08995 * 109.47751 * 62.83650 * 12 10 9 42 42 H 1.09001 * 109.47448 * 182.83962 * 12 10 9 43 43 H 1.09008 * 110.48631 * 217.71240 * 13 10 9 44 44 H 1.08997 * 110.49223 * 95.06684 * 13 10 9 45 45 H 1.08990 * 109.47356 * 299.99631 * 17 14 5 46 46 H 1.09004 * 109.47351 * 60.00052 * 17 14 5 47 47 H 1.09002 * 109.47284 * 59.99320 * 19 18 17 48 48 H 1.08999 * 109.47403 * 179.97438 * 19 18 17 49 49 H 1.08998 * 109.46839 * 299.99877 * 19 18 17 50 50 H 1.09001 * 109.46944 * 59.99848 * 20 18 17 51 51 H 1.09005 * 109.46898 * 180.02562 * 20 18 17 52 52 H 1.08997 * 109.47366 * 300.00020 * 20 18 17 53 53 H 0.96997 * 119.99719 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9834 0.6485 -1.2872 6 6 4.2684 1.5579 -2.3997 7 1 4.5284 0.9976 -3.2979 8 6 5.3954 2.5510 -2.0221 9 6 5.1670 3.7561 -2.9577 10 6 3.6842 3.7198 -3.3674 11 1 3.5973 3.6152 -4.4488 12 6 2.9817 4.9985 -2.9066 13 6 3.0632 2.4942 -2.6659 14 16 4.1675 -0.9852 -1.4851 15 8 5.1392 -1.1061 -2.5149 16 8 4.4246 -1.4703 -0.1744 17 6 2.5474 -1.5558 -2.0685 18 6 2.5896 -3.0689 -2.2917 19 6 3.6546 -3.4006 -3.3389 20 6 2.9333 -3.7691 -0.9754 21 6 1.2436 -3.5431 -2.7758 22 1 0.4387 -2.8359 -2.9112 23 6 1.0397 -4.8797 -3.0458 24 7 2.0201 -5.7408 -2.8814 25 14 -0.6286 -5.4674 -3.6466 26 1 -1.5537 -4.3103 -3.7485 27 1 -0.4790 -6.1012 -4.9811 28 1 -1.1794 -6.4579 -2.6870 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8462 -0.8899 34 1 3.9778 2.1681 0.1585 35 1 3.8465 0.5135 0.8014 36 1 5.3028 2.8546 -0.9794 37 1 6.3734 2.1058 -2.2053 38 1 5.8004 3.6688 -3.8404 39 1 5.3863 4.6851 -2.4315 40 1 3.0952 5.1070 -1.8280 41 1 3.4271 5.8583 -3.4070 42 1 1.9223 4.9413 -3.1565 43 1 2.3392 2.0070 -3.3191 44 1 2.5939 2.7889 -1.7273 45 1 1.7887 -1.3193 -1.3227 46 1 2.3027 -1.0573 -3.0065 47 1 4.6281 -3.0576 -2.9883 48 1 3.6850 -4.4785 -3.4975 49 1 3.4098 -2.9017 -4.2766 50 1 2.1746 -3.5328 -0.2293 51 1 2.9638 -4.8471 -1.1344 52 1 3.9067 -3.4263 -0.6248 53 1 1.8766 -6.6811 -3.0710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451449449.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:19 Heat of formation + Delta-G solvation = -143.394157 kcal Electronic energy + Delta-G solvation = -32393.361514 eV Core-core repulsion = 28391.447897 eV Total energy + Delta-G solvation = -4001.913617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.196 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.24625 -38.78652 -38.10990 -37.95157 -36.86273 -35.95044 -33.58375 -31.79761 -30.23225 -29.05496 -28.19540 -27.68851 -27.22600 -27.10737 -25.45192 -23.69540 -21.56076 -21.12793 -20.60986 -19.61197 -18.95789 -17.97067 -17.71521 -17.06231 -16.84898 -16.73737 -16.66884 -16.30285 -16.16636 -15.62487 -15.09479 -14.63375 -14.54013 -14.41567 -14.30387 -14.13765 -13.86740 -13.75796 -13.52839 -13.34691 -13.24644 -12.93882 -12.89179 -12.82601 -12.71800 -12.59322 -12.48705 -12.35511 -12.31730 -12.16257 -12.09223 -11.93407 -11.83039 -11.69632 -11.54066 -11.48846 -11.40650 -11.24987 -11.13111 -10.59159 -10.40850 -10.34713 -9.83114 -8.00291 -6.18459 -0.51410 1.43121 1.45331 1.55443 1.83131 2.45460 2.84676 3.01333 3.21584 3.32323 3.60179 3.68550 3.91434 4.01059 4.15806 4.19788 4.22757 4.35852 4.43510 4.47719 4.48646 4.54855 4.59778 4.62102 4.64498 4.66690 4.74695 4.78436 4.83168 4.87326 4.93684 4.96342 4.98218 5.05655 5.07392 5.12644 5.18917 5.21265 5.25299 5.40730 5.42069 5.44464 5.50636 5.52372 5.63411 5.66502 5.78995 5.97296 6.13928 6.32842 6.37396 6.85797 7.48977 9.00117 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.003971 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.516097 B = 7049.246133 C = 7345.172231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.020 3.980 4 C 0.108 3.892 5 N -0.986 5.986 6 C 0.130 3.870 7 H 0.084 0.916 8 C -0.133 4.133 9 C -0.114 4.114 10 C -0.095 4.095 11 H 0.071 0.929 12 C -0.140 4.140 13 C -0.136 4.136 14 S 2.605 3.395 15 O -1.000 7.000 16 O -0.990 6.990 17 C -0.586 4.586 18 C 0.072 3.928 19 C -0.158 4.158 20 C -0.152 4.152 21 C -0.508 4.508 22 H 0.062 0.938 23 C 0.016 3.984 24 N -0.910 5.910 25 Si 0.955 3.045 26 H -0.264 1.264 27 H -0.284 1.284 28 H -0.283 1.283 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.158 0.842 46 H 0.119 0.881 47 H 0.026 0.974 48 H 0.071 0.929 49 H 0.037 0.963 50 H 0.037 0.963 51 H 0.070 0.930 52 H 0.025 0.975 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.731 23.819 3.492 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.338 6.338 3 C -0.057 4.057 4 C -0.017 4.017 5 N -0.822 5.822 6 C 0.024 3.976 7 H 0.102 0.898 8 C -0.172 4.172 9 C -0.152 4.152 10 C -0.115 4.115 11 H 0.090 0.910 12 C -0.197 4.197 13 C -0.175 4.175 14 S 2.705 3.295 15 O -0.990 6.990 16 O -0.981 6.981 17 C -0.718 4.718 18 C 0.070 3.930 19 C -0.216 4.216 20 C -0.210 4.210 21 C -0.547 4.547 22 H 0.080 0.920 23 C -0.183 4.183 24 N -0.550 5.550 25 Si 0.781 3.219 26 H -0.188 1.188 27 H -0.210 1.210 28 H -0.209 1.209 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.150 0.850 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.116 0.884 45 H 0.176 0.824 46 H 0.137 0.863 47 H 0.045 0.955 48 H 0.090 0.910 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.088 0.912 52 H 0.043 0.957 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.257 23.000 3.671 23.293 hybrid contribution -1.401 -0.844 -0.648 1.759 sum -1.144 22.156 3.023 22.391 Atomic orbital electron populations 1.22849 0.79715 1.03075 1.01281 1.87837 1.21508 1.29248 1.95237 1.23670 0.93720 0.85068 1.03258 1.21679 0.93043 1.02987 0.83974 1.57337 1.82595 1.22988 1.19260 1.22117 0.96758 0.90790 0.87907 0.89766 1.22712 0.97552 0.95615 1.01329 1.22168 0.95998 0.97874 0.99132 1.21700 0.94838 0.94869 1.00045 0.91048 1.21848 1.00151 0.96015 1.01667 1.23104 0.96756 0.95430 1.02189 1.04906 0.77889 0.73215 0.73470 1.93466 1.59270 1.85618 1.60648 1.93455 1.85465 1.79507 1.39626 1.30642 1.21929 1.06877 1.12373 1.17890 0.96153 0.86498 0.92452 1.22200 0.96223 1.03952 0.99199 1.22124 0.97686 1.04016 0.97149 1.21261 0.96216 0.93125 1.44092 0.92017 1.25698 0.99930 0.97018 0.95645 1.69966 1.32723 1.02816 1.49462 0.85556 0.80385 0.78336 0.77650 1.18788 1.21028 1.20927 0.91821 0.92886 0.90721 0.89421 0.90169 0.85006 0.89858 0.89493 0.92460 0.91744 0.89700 0.91841 0.92050 0.92607 0.91660 0.88412 0.82449 0.86289 0.95526 0.91020 0.94375 0.94390 0.91168 0.95663 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.72 113.37 1.21 1.81 16 2 O -0.42 -11.54 7.27 -148.98 -1.08 -12.63 16 3 C 0.02 0.38 5.90 71.98 0.42 0.81 16 4 C 0.11 2.39 5.34 86.38 0.46 2.85 16 5 N -0.99 -28.06 2.75 -486.69 -1.34 -29.40 16 6 C 0.13 3.13 3.21 46.29 0.15 3.28 16 7 H 0.08 2.41 7.04 -2.38 -0.02 2.39 16 8 C -0.13 -2.54 6.39 31.67 0.20 -2.34 16 9 C -0.11 -1.63 6.46 31.32 0.20 -1.43 16 10 C -0.10 -1.35 3.50 -10.07 -0.04 -1.38 16 11 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 12 C -0.14 -1.44 8.83 71.98 0.64 -0.80 16 13 C -0.14 -2.38 5.19 31.68 0.16 -2.22 16 14 S 2.60 105.72 4.25 -56.49 -0.24 105.48 16 15 O -1.00 -45.49 14.27 -127.65 -1.82 -47.31 16 16 O -0.99 -45.17 14.18 -127.65 -1.81 -46.98 16 17 C -0.59 -24.66 4.87 71.98 0.35 -24.31 16 18 C 0.07 3.70 0.52 -52.93 -0.03 3.67 16 19 C -0.16 -8.35 7.78 71.98 0.56 -7.79 16 20 C -0.15 -8.07 7.77 71.98 0.56 -7.52 16 21 C -0.51 -27.28 8.01 25.60 0.21 -27.07 16 22 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 23 C 0.02 0.86 5.15 84.65 0.44 1.30 16 24 N -0.91 -51.86 9.35 21.45 0.20 -51.66 16 25 Si 0.95 42.82 29.54 68.60 2.03 44.85 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 28 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 29 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.30 5.04 -2.39 -0.01 1.28 16 34 H 0.13 1.86 6.37 -2.39 -0.02 1.85 16 35 H 0.08 2.22 6.88 -2.39 -0.02 2.20 16 36 H 0.09 1.37 6.35 -2.39 -0.02 1.35 16 37 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 0.93 7.67 -2.39 -0.02 0.91 16 40 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.10 1.38 4.55 -2.39 -0.01 1.36 16 45 H 0.16 6.27 4.50 -2.40 -0.01 6.26 16 46 H 0.12 4.61 8.14 -2.39 -0.02 4.59 16 47 H 0.03 1.36 5.46 -2.39 -0.01 1.34 16 48 H 0.07 4.08 6.07 -2.39 -0.01 4.07 16 49 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.07 4.01 6.07 -2.38 -0.01 3.99 16 52 H 0.02 1.30 5.46 -2.39 -0.01 1.28 16 53 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -71.15 394.08 2.32 -68.83 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.89 Total: 29.96 kcal Atomic # 6 Polarization: -66.65 SS G_CDS: 5.50 Total: -61.14 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -1.14 Total: -81.06 kcal Atomic # 8 Polarization: -102.21 SS G_CDS: -4.71 Total: -106.92 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 105.72 SS G_CDS: -0.24 Total: 105.48 kcal Total: -71.15 2.32 -68.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451449449.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.561 kcal (2) G-P(sol) polarization free energy of solvation -71.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds