Wall clock time and date at job start Wed Apr 1 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00309 * 2 1 4 4 H 1.09001 * 109.56857 * 29.84388 * 3 2 1 5 5 C 1.53085 * 109.52125 * 269.68551 * 3 2 1 6 6 O 1.42908 * 109.41847 * 297.70132 * 5 3 2 7 7 C 1.42901 * 114.09291 * 298.84441 * 6 5 3 8 8 C 1.53096 * 109.41540 * 61.15717 * 7 6 5 9 9 C 1.53174 * 109.16170 * 302.38595 * 8 7 6 10 10 H 1.09002 * 109.54516 * 297.03013 * 9 8 7 11 11 C 1.53001 * 109.54268 * 176.84796 * 9 8 7 12 12 N 1.46508 * 109.46975 * 65.00373 * 11 9 8 13 13 C 1.34771 * 120.00005 * 180.02562 * 12 11 9 14 14 O 1.21287 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00040 * 180.02562 * 13 12 11 16 16 C 1.53001 * 109.47010 * 179.97438 * 15 13 12 17 17 H 1.08995 * 109.47190 * 304.99379 * 16 15 13 18 18 C 1.50696 * 109.47053 * 65.00061 * 16 15 13 19 19 H 1.07995 * 120.00488 * 31.85730 * 18 16 15 20 20 C 1.37875 * 119.99576 * 211.85252 * 18 16 15 21 21 N 1.31513 * 120.00544 * 5.84373 * 20 18 16 22 22 Si 1.86805 * 119.99924 * 185.83951 * 20 18 16 23 23 H 1.48499 * 109.46995 * 90.00408 * 22 20 18 24 24 H 1.48499 * 109.47013 * 210.00353 * 22 20 18 25 25 H 1.48496 * 109.47218 * 330.00284 * 22 20 18 26 26 C 1.50698 * 109.46825 * 184.99963 * 16 15 13 27 27 C 1.38241 * 119.99954 * 298.39323 * 26 16 15 28 28 C 1.38240 * 119.99756 * 180.28304 * 27 26 16 29 29 C 1.38234 * 120.00058 * 359.46358 * 28 27 26 30 30 C 1.38237 * 119.99849 * 0.25865 * 29 28 27 31 31 C 1.38230 * 120.00381 * 359.97438 * 30 29 28 32 32 H 1.09003 * 109.47058 * 60.00205 * 1 2 3 33 33 H 1.08998 * 109.47587 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46951 * 299.99930 * 1 2 3 35 35 H 1.09003 * 109.48371 * 177.71554 * 5 3 2 36 36 H 1.09001 * 109.48967 * 57.68917 * 5 3 2 37 37 H 1.08996 * 109.48370 * 301.16892 * 7 6 5 38 38 H 1.09007 * 109.48754 * 181.14216 * 7 6 5 39 39 H 1.08999 * 109.51738 * 182.48516 * 8 7 6 40 40 H 1.08997 * 109.57526 * 62.32977 * 8 7 6 41 41 H 1.08993 * 109.47309 * 305.00712 * 11 9 8 42 42 H 1.08998 * 109.47198 * 185.00167 * 11 9 8 43 43 H 0.96997 * 119.99841 * 359.97438 * 12 11 9 44 44 H 1.09006 * 109.47001 * 59.99837 * 15 13 12 45 45 H 1.08998 * 109.46964 * 299.99806 * 15 13 12 46 46 H 0.97001 * 120.00738 * 179.97438 * 21 20 18 47 47 H 1.07994 * 120.00147 * 0.02562 * 27 26 16 48 48 H 1.08001 * 120.00137 * 179.73854 * 28 27 26 49 49 H 1.07997 * 120.00281 * 180.27985 * 29 28 27 50 50 H 1.08001 * 119.99595 * 180.02562 * 30 29 28 51 51 H 1.08001 * 120.00547 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0013 0.5111 5 6 2.2256 1.7695 -1.4428 6 8 3.1434 0.8882 -2.0934 7 6 4.4380 0.8451 -1.4901 8 6 4.3116 0.3438 -0.0491 9 6 3.3606 1.2645 0.7219 10 1 3.7821 2.2687 0.7669 11 6 3.1662 0.7268 2.1410 12 7 4.4380 0.7901 2.8657 13 6 4.5076 0.3658 4.1430 14 8 3.5173 -0.0679 4.6927 15 6 5.8156 0.4315 4.8886 16 6 5.6212 -0.1064 6.3077 17 1 4.8147 0.4404 6.7962 18 6 5.2704 -1.5706 6.2463 19 1 5.6656 -2.1879 5.4531 20 6 4.4447 -2.1223 7.2028 21 7 3.8714 -1.3512 8.1007 22 14 4.1404 -3.9653 7.2234 23 1 5.1590 -4.6257 8.0786 24 1 2.7857 -4.2372 7.7675 25 1 4.2344 -4.4980 5.8405 26 6 6.8958 0.0724 7.0915 27 6 8.0545 -0.5597 6.6804 28 6 9.2223 -0.4004 7.4027 29 6 9.2342 0.3997 8.5299 30 6 8.0769 1.0364 8.9377 31 6 6.9079 0.8733 8.2182 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 2.6313 2.7813 -1.4426 36 1 1.2738 1.7597 -1.9739 37 1 4.8727 1.8447 -1.4904 38 1 5.0802 0.1693 -2.0550 39 1 5.2921 0.3521 0.4268 40 1 3.9153 -0.6716 -0.0491 41 1 2.8259 -0.3076 2.0942 42 1 2.4220 1.3311 2.6598 43 1 5.2300 1.1366 2.4259 44 1 6.1553 1.4662 4.9359 45 1 6.5602 -0.1721 4.3697 46 1 3.2903 -1.7393 8.7734 47 1 8.0463 -1.1812 5.7972 48 1 10.1266 -0.8976 7.0839 49 1 10.1476 0.5278 9.0916 50 1 8.0863 1.6619 9.8181 51 1 6.0039 1.3710 8.5366 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452616629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:19 Heat of formation + Delta-G solvation = -110.648008 kcal Electronic energy + Delta-G solvation = -30954.837248 eV Core-core repulsion = 26818.899660 eV Total energy + Delta-G solvation = -4135.937589 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.24423 -38.91931 -38.13019 -37.15947 -35.37380 -33.89482 -32.44274 -31.38981 -30.77232 -30.00877 -29.00112 -27.29222 -26.75739 -25.34196 -23.65569 -23.14477 -22.26775 -21.59530 -20.27259 -20.06163 -19.15825 -16.95636 -16.80927 -16.53344 -16.22489 -16.02794 -15.84267 -15.48724 -15.41629 -14.77302 -14.60029 -14.40663 -14.16347 -14.07638 -13.83657 -13.51842 -13.29866 -12.85965 -12.64788 -12.59423 -12.42945 -12.20384 -12.13676 -11.91854 -11.61105 -11.56135 -11.48445 -11.12567 -10.92376 -10.85109 -10.66904 -10.56542 -10.52637 -10.26583 -10.24941 -10.03214 -9.38993 -9.33626 -9.06513 -8.76491 -8.46802 -8.28066 -8.04771 -7.61403 -5.88941 -3.87705 2.28556 2.34695 3.40237 3.41975 3.46092 3.49083 3.64194 3.73460 3.77747 4.43306 4.49722 4.55169 4.62633 4.68618 4.75531 4.98493 5.03765 5.13540 5.16894 5.21618 5.26650 5.39883 5.42345 5.46095 5.57474 5.61547 5.66222 5.72905 5.74022 5.79230 5.84976 5.95722 6.12771 6.13632 6.23511 6.27851 6.32286 6.41434 6.55119 6.82272 6.83837 6.92541 7.00034 7.05452 7.10314 7.31070 7.46340 7.55142 7.92070 7.95622 8.07673 8.17771 8.42671 9.11685 9.18754 9.73076 11.21187 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011975 B = 0.002737 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.650717 B =10227.832029 C =11586.717091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.366 6.366 3 C 0.061 3.939 4 H 0.072 0.928 5 C 0.043 3.957 6 O -0.373 6.373 7 C 0.060 3.940 8 C -0.147 4.147 9 C -0.096 4.096 10 H 0.086 0.914 11 C 0.134 3.866 12 N -0.752 5.752 13 C 0.510 3.490 14 O -0.492 6.492 15 C -0.121 4.121 16 C 0.078 3.922 17 H 0.074 0.926 18 C -0.490 4.490 19 H 0.050 0.950 20 C 0.078 3.922 21 N -0.880 5.880 22 Si 0.884 3.116 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.275 1.275 26 C -0.023 4.023 27 C -0.116 4.116 28 C -0.131 4.131 29 C -0.156 4.156 30 C -0.128 4.128 31 C -0.121 4.121 32 H 0.038 0.962 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.390 0.610 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.258 0.742 47 H 0.113 0.887 48 H 0.105 0.895 49 H 0.104 0.896 50 H 0.106 0.894 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.032 9.564 -16.444 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C 0.002 3.998 4 H 0.090 0.910 5 C -0.035 4.035 6 O -0.291 6.291 7 C -0.016 4.016 8 C -0.185 4.185 9 C -0.115 4.115 10 H 0.104 0.896 11 C 0.009 3.991 12 N -0.408 5.408 13 C 0.296 3.704 14 O -0.362 6.362 15 C -0.162 4.162 16 C 0.059 3.941 17 H 0.093 0.907 18 C -0.528 4.528 19 H 0.068 0.932 20 C -0.125 4.125 21 N -0.517 5.517 22 Si 0.713 3.287 23 H -0.209 1.209 24 H -0.214 1.214 25 H -0.200 1.200 26 C -0.023 4.023 27 C -0.134 4.134 28 C -0.150 4.150 29 C -0.174 4.174 30 C -0.146 4.146 31 C -0.139 4.139 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.223 0.777 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.068 0.932 47 H 0.131 0.869 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.124 0.876 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.191 8.933 -15.997 18.323 hybrid contribution 0.035 -0.603 0.233 0.647 sum 0.226 8.330 -15.765 17.831 Atomic orbital electron populations 1.22815 0.81223 1.03040 0.99638 1.88012 1.19338 1.26215 1.94847 1.22733 0.94987 0.86275 0.95787 0.90970 1.23051 0.94302 0.92926 0.93204 1.87959 1.22245 1.65422 1.53503 1.22620 0.84801 1.00463 0.93743 1.22193 0.99879 1.01159 0.95277 1.21540 0.94659 1.00233 0.95090 0.89560 1.21083 0.86887 1.02029 0.89055 1.46214 1.11539 1.68679 1.14338 1.20882 0.91949 0.76972 0.80561 1.90780 1.37253 1.41436 1.66747 1.21769 0.93951 1.00569 0.99868 1.17848 0.90742 0.98010 0.87543 0.90740 1.20667 1.28744 0.92539 1.10826 0.93185 1.24800 0.94719 0.97249 0.95751 1.69897 1.30290 1.34412 1.17114 0.86724 0.77330 0.86584 0.78103 1.20896 1.21369 1.20036 1.20790 0.95776 0.90739 0.95022 1.20958 0.92381 0.99805 1.00295 1.20981 0.97850 0.99749 0.96374 1.20797 0.97628 1.00689 0.98313 1.20989 0.93549 1.00583 0.99483 1.21111 0.97088 0.99571 0.96134 0.94352 0.89488 0.93877 0.92338 0.88857 0.93384 0.88767 0.90611 0.89766 0.90922 0.92404 0.77749 0.91827 0.90661 0.93204 0.86884 0.87656 0.87802 0.87634 0.86770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.37 -4.38 9.07 -42.72 -0.39 -4.76 16 3 C 0.06 0.59 2.43 -26.60 -0.06 0.53 16 4 H 0.07 0.61 7.79 -51.93 -0.40 0.20 16 5 C 0.04 0.37 6.49 37.20 0.24 0.61 16 6 O -0.37 -4.06 10.70 -42.72 -0.46 -4.52 16 7 C 0.06 0.53 6.84 37.21 0.25 0.79 16 8 C -0.15 -1.47 5.10 -26.59 -0.14 -1.60 16 9 C -0.10 -0.97 2.15 -90.44 -0.19 -1.17 16 10 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 11 C 0.13 1.86 4.83 -4.04 -0.02 1.84 16 12 N -0.75 -11.10 5.31 -60.29 -0.32 -11.42 16 13 C 0.51 10.23 7.58 -10.99 -0.08 10.15 16 14 O -0.49 -12.54 14.98 5.55 0.08 -12.46 16 15 C -0.12 -2.34 4.92 -27.88 -0.14 -2.48 16 16 C 0.08 1.86 1.73 -92.93 -0.16 1.70 16 17 H 0.07 2.06 6.87 -51.93 -0.36 1.70 16 18 C -0.49 -13.30 6.45 -34.44 -0.22 -13.53 16 19 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 20 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 21 N -0.88 -26.16 12.81 55.43 0.71 -25.45 16 22 Si 0.88 22.48 29.54 -169.99 -5.02 17.46 16 23 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 C -0.02 -0.50 4.77 -104.62 -0.50 -1.00 16 27 C -0.12 -2.34 8.86 -39.58 -0.35 -2.69 16 28 C -0.13 -2.35 10.05 -39.58 -0.40 -2.74 16 29 C -0.16 -2.71 10.05 -39.58 -0.40 -3.11 16 30 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 31 C -0.12 -2.56 9.67 -39.58 -0.38 -2.94 16 32 H 0.04 0.28 7.86 -51.93 -0.41 -0.13 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.71 7.86 -51.93 -0.41 0.30 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.75 8.14 -51.92 -0.42 0.32 16 39 H 0.08 0.68 7.28 -51.93 -0.38 0.30 16 40 H 0.08 1.04 7.83 -51.93 -0.41 0.64 16 41 H 0.07 1.22 7.76 -51.93 -0.40 0.81 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.39 4.43 7.68 -40.82 -0.31 4.12 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.08 1.34 7.66 -51.93 -0.40 0.94 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.11 2.18 7.70 -52.49 -0.40 1.77 16 48 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 49 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 50 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 51 H 0.11 2.45 7.95 -52.49 -0.42 2.03 16 LS Contribution 411.58 15.07 6.20 6.20 Total: -1.00 -34.28 411.58 -9.63 -43.92 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -8.49 Total: 5.92 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.95 Total: -14.89 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.39 Total: -36.87 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.76 Total: -21.74 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.28 -9.63 -43.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452616629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.732 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds