Wall clock time and date at job start Wed Apr 1 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00309 * 2 1 4 4 H 1.09001 * 109.56857 * 29.84388 * 3 2 1 5 5 C 1.53085 * 109.52125 * 269.68551 * 3 2 1 6 6 O 1.42908 * 109.41847 * 297.70132 * 5 3 2 7 7 C 1.42901 * 114.09291 * 298.84441 * 6 5 3 8 8 C 1.53096 * 109.41540 * 61.15717 * 7 6 5 9 9 C 1.53174 * 109.16170 * 302.38595 * 8 7 6 10 10 H 1.09002 * 109.54516 * 297.03013 * 9 8 7 11 11 C 1.53001 * 109.54268 * 176.84796 * 9 8 7 12 12 N 1.46508 * 109.46975 * 65.00373 * 11 9 8 13 13 C 1.34771 * 120.00005 * 180.02562 * 12 11 9 14 14 O 1.21287 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00040 * 180.02562 * 13 12 11 16 16 C 1.53001 * 109.47010 * 179.97438 * 15 13 12 17 17 H 1.08995 * 109.47190 * 304.99379 * 16 15 13 18 18 C 1.50696 * 109.47053 * 65.00061 * 16 15 13 19 19 H 1.07995 * 120.00488 * 31.85730 * 18 16 15 20 20 C 1.37875 * 119.99576 * 211.85252 * 18 16 15 21 21 N 1.31513 * 120.00544 * 5.84373 * 20 18 16 22 22 Si 1.86805 * 119.99924 * 185.83951 * 20 18 16 23 23 H 1.48499 * 109.46995 * 90.00408 * 22 20 18 24 24 H 1.48499 * 109.47013 * 210.00353 * 22 20 18 25 25 H 1.48496 * 109.47218 * 330.00284 * 22 20 18 26 26 C 1.50698 * 109.46825 * 184.99963 * 16 15 13 27 27 C 1.38241 * 119.99954 * 298.39323 * 26 16 15 28 28 C 1.38240 * 119.99756 * 180.28304 * 27 26 16 29 29 C 1.38234 * 120.00058 * 359.46358 * 28 27 26 30 30 C 1.38237 * 119.99849 * 0.25865 * 29 28 27 31 31 C 1.38230 * 120.00381 * 359.97438 * 30 29 28 32 32 H 1.09003 * 109.47058 * 60.00205 * 1 2 3 33 33 H 1.08998 * 109.47587 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46951 * 299.99930 * 1 2 3 35 35 H 1.09003 * 109.48371 * 177.71554 * 5 3 2 36 36 H 1.09001 * 109.48967 * 57.68917 * 5 3 2 37 37 H 1.08996 * 109.48370 * 301.16892 * 7 6 5 38 38 H 1.09007 * 109.48754 * 181.14216 * 7 6 5 39 39 H 1.08999 * 109.51738 * 182.48516 * 8 7 6 40 40 H 1.08997 * 109.57526 * 62.32977 * 8 7 6 41 41 H 1.08993 * 109.47309 * 305.00712 * 11 9 8 42 42 H 1.08998 * 109.47198 * 185.00167 * 11 9 8 43 43 H 0.96997 * 119.99841 * 359.97438 * 12 11 9 44 44 H 1.09006 * 109.47001 * 59.99837 * 15 13 12 45 45 H 1.08998 * 109.46964 * 299.99806 * 15 13 12 46 46 H 0.97001 * 120.00738 * 179.97438 * 21 20 18 47 47 H 1.07994 * 120.00147 * 0.02562 * 27 26 16 48 48 H 1.08001 * 120.00137 * 179.73854 * 28 27 26 49 49 H 1.07997 * 120.00281 * 180.27985 * 29 28 27 50 50 H 1.08001 * 119.99595 * 180.02562 * 30 29 28 51 51 H 1.08001 * 120.00547 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0013 0.5111 5 6 2.2256 1.7695 -1.4428 6 8 3.1434 0.8882 -2.0934 7 6 4.4380 0.8451 -1.4901 8 6 4.3116 0.3438 -0.0491 9 6 3.3606 1.2645 0.7219 10 1 3.7821 2.2687 0.7669 11 6 3.1662 0.7268 2.1410 12 7 4.4380 0.7901 2.8657 13 6 4.5076 0.3658 4.1430 14 8 3.5173 -0.0679 4.6927 15 6 5.8156 0.4315 4.8886 16 6 5.6212 -0.1064 6.3077 17 1 4.8147 0.4404 6.7962 18 6 5.2704 -1.5706 6.2463 19 1 5.6656 -2.1879 5.4531 20 6 4.4447 -2.1223 7.2028 21 7 3.8714 -1.3512 8.1007 22 14 4.1404 -3.9653 7.2234 23 1 5.1590 -4.6257 8.0786 24 1 2.7857 -4.2372 7.7675 25 1 4.2344 -4.4980 5.8405 26 6 6.8958 0.0724 7.0915 27 6 8.0545 -0.5597 6.6804 28 6 9.2223 -0.4004 7.4027 29 6 9.2342 0.3997 8.5299 30 6 8.0769 1.0364 8.9377 31 6 6.9079 0.8733 8.2182 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 2.6313 2.7813 -1.4426 36 1 1.2738 1.7597 -1.9739 37 1 4.8727 1.8447 -1.4904 38 1 5.0802 0.1693 -2.0550 39 1 5.2921 0.3521 0.4268 40 1 3.9153 -0.6716 -0.0491 41 1 2.8259 -0.3076 2.0942 42 1 2.4220 1.3311 2.6598 43 1 5.2300 1.1366 2.4259 44 1 6.1553 1.4662 4.9359 45 1 6.5602 -0.1721 4.3697 46 1 3.2903 -1.7393 8.7734 47 1 8.0463 -1.1812 5.7972 48 1 10.1266 -0.8976 7.0839 49 1 10.1476 0.5278 9.0916 50 1 8.0863 1.6619 9.8181 51 1 6.0039 1.3710 8.5366 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452616629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:18 Heat of formation + Delta-G solvation = -133.136014 kcal Electronic energy + Delta-G solvation = -30955.812402 eV Core-core repulsion = 26818.899660 eV Total energy + Delta-G solvation = -4136.912742 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.13834 -40.41691 -39.63461 -37.93901 -36.60525 -35.68072 -33.71569 -33.27580 -31.49990 -31.48217 -30.46978 -28.55087 -27.50060 -27.11649 -24.64653 -24.38840 -23.47746 -23.08291 -21.65829 -21.12976 -20.68402 -18.53102 -18.03871 -17.61651 -17.46299 -17.09156 -17.04610 -16.54395 -16.42543 -16.35990 -15.95433 -15.73952 -15.62316 -15.37479 -14.90170 -14.75611 -14.51512 -14.19987 -14.04232 -13.96397 -13.61670 -13.55118 -13.37085 -13.18608 -13.13033 -12.89557 -12.83960 -12.53350 -12.43478 -12.26363 -12.00421 -11.82944 -11.72938 -11.64256 -11.35346 -11.26085 -11.00665 -10.97290 -10.58848 -10.38041 -10.06882 -9.87592 -9.54063 -9.19359 -8.03106 -6.05106 0.78018 0.84306 1.34969 1.36918 1.44122 2.02992 2.40279 2.45894 2.74185 3.09156 3.18461 3.36533 3.65913 3.68465 3.79675 3.92465 4.23044 4.26229 4.29696 4.32693 4.36683 4.41654 4.42446 4.47212 4.49357 4.56431 4.57989 4.63746 4.67199 4.75216 4.75939 4.78093 4.85497 4.91011 4.93392 4.99339 5.02715 5.10100 5.26141 5.36292 5.39094 5.52974 5.65796 5.69187 5.79370 5.84307 5.96718 6.13961 6.18993 6.40618 6.42683 6.47105 6.83562 7.03116 7.56656 7.66249 9.06507 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011975 B = 0.002737 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.650717 B =10227.832029 C =11586.717091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.055 3.945 4 H 0.085 0.915 5 C 0.043 3.957 6 O -0.397 6.397 7 C 0.061 3.939 8 C -0.145 4.145 9 C -0.087 4.087 10 H 0.117 0.883 11 C 0.139 3.861 12 N -0.726 5.726 13 C 0.507 3.493 14 O -0.557 6.557 15 C -0.115 4.115 16 C 0.080 3.920 17 H 0.026 0.974 18 C -0.483 4.483 19 H 0.045 0.955 20 C 0.022 3.978 21 N -0.916 5.916 22 Si 0.932 3.068 23 H -0.273 1.273 24 H -0.292 1.292 25 H -0.273 1.273 26 C -0.047 4.047 27 C -0.127 4.127 28 C -0.126 4.126 29 C -0.147 4.147 30 C -0.128 4.128 31 C -0.146 4.146 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.038 0.962 42 H 0.046 0.954 43 H 0.411 0.589 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.253 0.747 47 H 0.117 0.883 48 H 0.142 0.858 49 H 0.144 0.856 50 H 0.132 0.868 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.164 10.781 -17.939 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.004 4.004 4 H 0.103 0.897 5 C -0.033 4.033 6 O -0.316 6.316 7 C -0.015 4.015 8 C -0.182 4.182 9 C -0.106 4.106 10 H 0.135 0.865 11 C 0.014 3.986 12 N -0.382 5.382 13 C 0.295 3.705 14 O -0.433 6.433 15 C -0.155 4.155 16 C 0.061 3.939 17 H 0.044 0.956 18 C -0.521 4.521 19 H 0.063 0.937 20 C -0.176 4.176 21 N -0.556 5.556 22 Si 0.759 3.241 23 H -0.199 1.199 24 H -0.218 1.218 25 H -0.198 1.198 26 C -0.048 4.048 27 C -0.145 4.145 28 C -0.143 4.143 29 C -0.165 4.165 30 C -0.146 4.146 31 C -0.164 4.164 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.248 0.752 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.061 0.939 47 H 0.135 0.865 48 H 0.159 0.841 49 H 0.162 0.838 50 H 0.149 0.851 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.371 10.170 -17.555 20.566 hybrid contribution -0.868 -0.912 0.662 1.422 sum 2.503 9.258 -16.893 19.426 Atomic orbital electron populations 1.22915 0.80221 1.03321 1.00613 1.87975 1.20675 1.27897 1.95093 1.22921 0.94734 0.85742 0.96984 0.89741 1.23166 0.94640 0.93633 0.91903 1.87929 1.23237 1.66282 1.54183 1.22714 0.84387 1.01978 0.92440 1.22155 1.00032 0.99395 0.96667 1.21541 0.95578 1.01424 0.92044 0.86539 1.21046 0.85987 1.00111 0.91422 1.45906 1.12897 1.66684 1.12689 1.21100 0.91359 0.76238 0.81841 1.90762 1.39229 1.44789 1.68548 1.21660 0.94065 1.02450 0.97313 1.17626 0.90561 0.95662 0.90076 0.95602 1.20970 1.27398 0.94196 1.09557 0.93717 1.25474 0.95422 1.00529 0.96182 1.70047 1.31806 1.35541 1.18228 0.85960 0.77082 0.82959 0.78069 1.19862 1.21839 1.19828 1.20581 0.95724 0.92865 0.95595 1.21055 0.92566 0.99850 1.01077 1.21385 0.98113 0.99054 0.95781 1.21271 0.98448 0.98907 0.97903 1.21286 0.92857 1.00662 0.99785 1.21117 0.97773 1.00636 0.96880 0.92301 0.89712 0.93882 0.89784 0.88037 0.90839 0.88152 0.89437 0.92988 0.94341 0.93517 0.75192 0.88890 0.88570 0.93854 0.86501 0.84057 0.83841 0.85059 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.82 113.37 1.23 1.70 16 2 O -0.40 -9.65 9.07 -141.82 -1.29 -10.93 16 3 C 0.05 1.00 2.43 30.68 0.07 1.07 16 4 H 0.08 1.30 7.79 -2.39 -0.02 1.28 16 5 C 0.04 0.64 6.49 72.01 0.47 1.11 16 6 O -0.40 -7.89 10.70 -141.82 -1.52 -9.41 16 7 C 0.06 0.93 6.84 72.01 0.49 1.43 16 8 C -0.14 -2.68 5.10 30.68 0.16 -2.53 16 9 C -0.09 -1.63 2.15 -10.68 -0.02 -1.65 16 10 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 11 C 0.14 3.93 4.83 86.38 0.42 4.35 16 12 N -0.73 -21.13 5.31 -463.05 -2.46 -23.59 16 13 C 0.51 20.86 7.58 87.66 0.66 21.52 16 14 O -0.56 -30.11 14.98 -3.05 -0.05 -30.16 16 15 C -0.11 -4.44 4.92 29.85 0.15 -4.29 16 16 C 0.08 3.97 1.73 -12.29 -0.02 3.95 16 17 H 0.03 1.52 6.87 -2.39 -0.02 1.51 16 18 C -0.48 -27.07 6.45 25.60 0.17 -26.91 16 19 H 0.04 2.48 7.82 -2.91 -0.02 2.46 16 20 C 0.02 1.33 5.45 84.65 0.46 1.79 16 21 N -0.92 -57.47 12.81 21.45 0.27 -57.19 16 22 Si 0.93 47.54 29.54 68.60 2.03 49.57 16 23 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 25 H -0.27 -13.67 7.11 99.48 0.71 -12.96 16 26 C -0.05 -2.09 4.77 -19.86 -0.09 -2.19 16 27 C -0.13 -4.90 8.86 22.27 0.20 -4.70 16 28 C -0.13 -4.00 10.05 22.27 0.22 -3.78 16 29 C -0.15 -4.51 10.05 22.27 0.22 -4.29 16 30 C -0.13 -4.45 10.05 22.27 0.22 -4.23 16 31 C -0.15 -6.25 9.67 22.27 0.22 -6.04 16 32 H 0.06 0.82 7.86 -2.39 -0.02 0.80 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.04 0.77 8.09 -2.39 -0.02 0.75 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 36 H 0.10 1.31 7.86 -2.39 -0.02 1.29 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.09 1.37 7.28 -2.39 -0.02 1.35 16 40 H 0.05 1.31 7.83 -2.39 -0.02 1.29 16 41 H 0.04 1.37 7.76 -2.39 -0.02 1.35 16 42 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.41 8.44 7.68 -92.71 -0.71 7.72 16 44 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 45 H 0.10 3.30 7.66 -2.39 -0.02 3.28 16 46 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 47 H 0.12 4.30 7.70 -2.91 -0.02 4.28 16 48 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 49 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 50 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 51 H 0.09 4.26 7.95 -2.91 -0.02 4.23 16 Total: -1.00 -80.61 411.58 2.41 -78.20 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.20 Total: 27.20 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 5.22 Total: -23.69 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -2.19 Total: -80.78 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -2.85 Total: -50.49 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -80.61 2.41 -78.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452616629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.935 kcal (2) G-P(sol) polarization free energy of solvation -80.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds