Wall clock time and date at job start Wed Apr 1 2020 05:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00055 * 2 1 4 4 C 1.53005 * 109.46948 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47081 * 65.00193 * 4 3 2 6 6 C 1.37105 * 119.99924 * 264.46985 * 5 4 3 7 7 H 1.07995 * 119.99937 * 138.26711 * 6 5 4 8 8 C 1.38948 * 119.99379 * 318.26670 * 6 5 4 9 9 N 1.31413 * 120.00617 * 341.88373 * 8 6 5 10 10 Si 1.86809 * 119.99639 * 161.88968 * 8 6 5 11 11 H 1.48492 * 109.46945 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47073 * 119.99922 * 10 8 6 13 13 H 1.48504 * 109.46685 * 239.99636 * 10 8 6 14 14 C 1.34774 * 120.00265 * 84.46658 * 5 4 3 15 15 O 1.21288 * 120.00089 * 0.02562 * 14 5 4 16 16 C 1.50704 * 120.00140 * 179.97438 * 14 5 4 17 17 C 1.52997 * 109.46952 * 180.02562 * 16 14 5 18 18 C 1.53001 * 109.46857 * 180.02562 * 17 16 14 19 19 O 1.42901 * 109.46938 * 179.97438 * 18 17 16 20 20 C 1.35905 * 116.99931 * 179.97438 * 19 18 17 21 21 C 1.38752 * 120.09081 * 0.02562 * 20 19 18 22 22 C 1.38000 * 119.88146 * 180.02562 * 21 20 19 23 23 C 1.38553 * 120.28756 * 359.97438 * 22 21 20 24 24 C 1.38264 * 119.93458 * 0.02562 * 23 22 21 25 25 C 1.38405 * 119.90661 * 0.02562 * 24 23 22 26 26 C 1.51385 * 109.74959 * 180.02562 * 24 23 22 27 27 C 1.54341 * 105.17418 * 342.80702 * 26 24 23 28 28 C 1.51690 * 130.24236 * 179.84518 * 23 22 21 29 29 H 1.09002 * 109.47276 * 60.00026 * 1 2 3 30 30 H 1.09003 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47076 * 299.99852 * 1 2 3 32 32 H 1.08997 * 109.47252 * 59.99960 * 3 2 1 33 33 H 1.08998 * 109.46858 * 299.99584 * 3 2 1 34 34 H 1.08996 * 109.47230 * 305.00193 * 4 3 2 35 35 H 1.08993 * 109.46700 * 184.99788 * 4 3 2 36 36 H 0.96993 * 120.00040 * 180.02562 * 9 8 6 37 37 H 1.09005 * 109.46693 * 60.00259 * 16 14 5 38 38 H 1.08994 * 109.47199 * 300.00550 * 16 14 5 39 39 H 1.08992 * 109.47284 * 60.00229 * 17 16 14 40 40 H 1.09002 * 109.47003 * 299.99745 * 17 16 14 41 41 H 1.09000 * 109.47327 * 59.99539 * 18 17 16 42 42 H 1.09004 * 109.46942 * 300.00016 * 18 17 16 43 43 H 1.08004 * 120.05891 * 0.02562 * 21 20 19 44 44 H 1.07994 * 119.86143 * 180.02562 * 22 21 20 45 45 H 1.08009 * 119.91454 * 179.97438 * 25 24 23 46 46 H 1.09003 * 110.30266 * 223.88338 * 26 24 23 47 47 H 1.08994 * 110.38271 * 101.77719 * 26 24 23 48 48 H 1.08997 * 110.82154 * 144.59189 * 27 26 24 49 49 H 1.09001 * 110.81979 * 267.94708 * 27 26 24 50 50 H 1.09005 * 110.25562 * 78.26631 * 28 23 22 51 51 H 1.08997 * 110.49395 * 316.01890 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.2060 -0.7862 -1.3049 7 1 3.8775 -1.3574 -2.1605 8 6 4.8622 -1.4198 -0.2567 9 7 5.5681 -0.7150 0.5986 10 14 4.7409 -3.2740 -0.0636 11 1 3.8924 -3.8301 -1.1480 12 1 6.0988 -3.8697 -0.1421 13 1 4.1345 -3.5958 1.2532 14 6 4.1541 1.3213 -2.3535 15 8 3.9507 2.5161 -2.3074 16 6 4.6074 0.6834 -3.6414 17 6 4.7314 1.7557 -4.7256 18 6 5.1911 1.1079 -6.0333 19 8 5.3063 2.1093 -7.0462 20 6 5.7079 1.6980 -8.2777 21 6 5.9851 0.3580 -8.5074 22 6 6.3931 -0.0548 -9.7594 23 6 6.5268 0.8630 -10.7887 24 6 6.2512 2.1988 -10.5621 25 6 5.8428 2.6159 -9.3072 26 6 6.4708 2.9894 -11.8343 27 6 7.3248 2.0736 -12.7367 28 6 6.9555 0.6635 -12.2300 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8514 0.5681 0.8409 35 1 3.9785 2.1764 0.0889 36 1 6.0264 -1.1574 1.3301 37 1 3.8788 -0.0655 -3.9520 38 1 5.5759 0.2069 -3.4896 39 1 5.4602 2.5042 -4.4148 40 1 3.7630 2.2324 -4.8775 41 1 4.4620 0.3595 -6.3440 42 1 6.1593 0.6308 -5.8817 43 1 5.8817 -0.3606 -7.7078 44 1 6.6083 -1.0979 -9.9380 45 1 5.6278 3.6595 -9.1300 46 1 7.0070 3.9133 -11.6176 47 1 5.5171 3.2098 -12.3137 48 1 7.0477 2.1942 -13.7839 49 1 8.3873 2.2705 -12.5935 50 1 6.1319 0.2551 -12.8157 51 1 7.8216 0.0038 -12.2827 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457203399.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:48 Heat of formation + Delta-G solvation = -120.000994 kcal Electronic energy + Delta-G solvation = -29718.149555 eV Core-core repulsion = 25581.806390 eV Total energy + Delta-G solvation = -4136.343165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.40894 -40.59494 -39.59695 -38.58812 -36.63788 -35.89430 -34.53126 -33.50898 -32.31791 -31.11841 -29.39191 -28.66871 -27.46898 -27.20934 -26.37642 -24.26495 -23.65230 -22.49083 -21.66164 -21.46197 -20.89306 -18.93841 -18.33287 -17.92677 -17.43725 -17.11844 -17.08969 -16.82539 -16.52298 -16.19135 -16.12175 -16.07284 -15.80069 -15.47807 -15.34826 -14.54892 -14.42289 -14.35505 -13.76100 -13.68811 -13.60003 -13.46275 -13.20387 -13.18363 -12.90134 -12.83136 -12.72372 -12.60911 -12.48456 -12.42982 -12.30849 -12.11304 -12.01333 -12.00326 -11.78047 -11.70678 -11.53122 -11.29229 -10.99224 -10.56446 -10.32792 -9.76613 -9.39496 -8.96231 -8.24871 -6.01898 0.34810 0.45006 1.44081 1.51380 1.62489 2.04320 2.10493 2.38108 2.74370 2.95304 3.03291 3.21256 3.57919 3.68107 3.88407 3.93907 3.98637 4.15962 4.18307 4.22256 4.24256 4.30229 4.37722 4.40703 4.44783 4.49775 4.52561 4.53910 4.57248 4.61974 4.67046 4.74965 4.76041 4.82744 4.88312 4.96645 4.97952 5.04837 5.08482 5.15154 5.25899 5.28325 5.31816 5.33996 5.40604 5.44705 5.54446 5.68894 5.84855 6.07600 6.39354 6.45273 6.46905 7.19738 7.62349 8.05737 8.80325 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.001937 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.549738 B =14449.911651 C =15367.379677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.064 3.936 4 C 0.118 3.882 5 N -0.441 5.441 6 C -0.332 4.332 7 H 0.093 0.907 8 C 0.006 3.994 9 N -0.899 5.899 10 Si 0.979 3.021 11 H -0.257 1.257 12 H -0.280 1.280 13 H -0.285 1.285 14 C 0.457 3.543 15 O -0.638 6.638 16 C -0.102 4.102 17 C -0.088 4.088 18 C 0.069 3.931 19 O -0.334 6.334 20 C 0.111 3.889 21 C -0.217 4.217 22 C -0.074 4.074 23 C -0.149 4.149 24 C -0.070 4.070 25 C -0.163 4.163 26 C -0.083 4.083 27 C -0.116 4.116 28 C -0.075 4.075 29 H 0.039 0.961 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.032 0.968 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.269 0.731 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.126 0.874 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 -0.576 -21.115 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.013 4.013 4 C -0.006 4.006 5 N -0.159 5.159 6 C -0.460 4.460 7 H 0.111 0.889 8 C -0.196 4.196 9 N -0.536 5.536 10 Si 0.804 3.196 11 H -0.181 1.181 12 H -0.206 1.206 13 H -0.211 1.211 14 C 0.248 3.752 15 O -0.527 6.527 16 C -0.142 4.142 17 C -0.126 4.126 18 C -0.005 4.005 19 O -0.249 6.249 20 C 0.066 3.934 21 C -0.236 4.236 22 C -0.091 4.091 23 C -0.149 4.149 24 C -0.071 4.071 25 C -0.182 4.182 26 C -0.120 4.120 27 C -0.153 4.153 28 C -0.112 4.112 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.158 0.842 44 H 0.162 0.838 45 H 0.144 0.856 46 H 0.100 0.900 47 H 0.110 0.890 48 H 0.116 0.884 49 H 0.093 0.907 50 H 0.105 0.895 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.166 -0.022 -20.820 20.821 hybrid contribution -0.261 -0.514 1.171 1.305 sum -0.427 -0.536 -19.650 19.661 Atomic orbital electron populations 1.22896 0.80586 1.03439 1.00226 1.88051 1.20506 1.27709 1.95313 1.22805 0.94443 0.84643 0.99436 1.21271 0.91377 0.97512 0.90402 1.43527 1.56777 1.07688 1.07908 1.19539 1.36331 0.82250 1.07846 0.88924 1.26143 0.93267 1.03812 0.96403 1.70037 1.28691 1.38305 1.16594 0.85092 0.77811 0.78266 0.78441 1.18068 1.20637 1.21061 1.21162 0.80125 0.86132 0.87791 1.90490 1.58662 1.16711 1.86822 1.21118 1.03718 0.98242 0.91125 1.21064 1.02039 0.97833 0.91673 1.22826 1.02000 0.90024 0.85688 1.86020 1.82561 1.38309 1.17964 1.19110 0.95854 0.93527 0.84914 1.21397 1.07751 0.94624 0.99820 1.20708 0.97031 1.00360 0.91046 1.21004 1.03053 0.93621 0.97267 1.20699 0.96362 0.96025 0.93969 1.19989 1.07217 0.99518 0.91466 1.21170 1.01509 0.98418 0.90904 1.22323 1.00010 0.93051 0.99929 1.21105 1.01755 0.98636 0.89729 0.94270 0.88601 0.93058 0.91659 0.94978 0.89557 0.92719 0.92155 0.88463 0.88831 0.92475 0.92011 0.90340 0.90726 0.84195 0.83848 0.85627 0.90004 0.89049 0.88449 0.90677 0.89465 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -16.53 10.44 -148.98 -1.56 -18.08 16 3 C 0.06 2.69 6.24 71.98 0.45 3.14 16 4 C 0.12 5.82 5.27 86.38 0.45 6.28 16 5 N -0.44 -22.40 2.45 -635.54 -1.56 -23.96 16 6 C -0.33 -16.63 8.29 84.04 0.70 -15.93 16 7 H 0.09 4.40 7.21 -2.91 -0.02 4.38 16 8 C 0.01 0.31 4.95 84.93 0.42 0.73 16 9 N -0.90 -48.25 11.66 21.66 0.25 -48.00 16 10 Si 0.98 40.10 29.59 68.60 2.03 42.13 16 11 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 12 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 13 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 14 C 0.46 22.37 7.60 87.66 0.67 23.04 16 15 O -0.64 -34.13 15.65 -3.05 -0.05 -34.17 16 16 C -0.10 -3.94 4.43 29.85 0.13 -3.81 16 17 C -0.09 -3.09 4.87 30.59 0.15 -2.94 16 18 C 0.07 1.97 4.74 71.98 0.34 2.31 16 19 O -0.33 -10.52 10.14 -92.48 -0.94 -11.46 16 20 C 0.11 3.12 6.68 22.48 0.15 3.27 16 21 C -0.22 -5.25 9.04 22.34 0.20 -5.05 16 22 C -0.07 -1.51 10.03 22.29 0.22 -1.29 16 23 C -0.15 -2.91 6.15 -19.47 -0.12 -3.03 16 24 C -0.07 -1.48 6.13 -19.60 -0.12 -1.61 16 25 C -0.16 -4.20 9.98 22.39 0.22 -3.97 16 26 C -0.08 -1.16 6.77 30.52 0.21 -0.96 16 27 C -0.12 -1.19 7.07 31.50 0.22 -0.97 16 28 C -0.08 -0.94 6.79 30.61 0.21 -0.74 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 4.56 5.81 -2.39 -0.01 4.55 16 35 H 0.05 2.76 7.59 -2.39 -0.02 2.75 16 36 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 37 H 0.10 3.39 7.70 -2.38 -0.02 3.37 16 38 H 0.09 3.54 8.10 -2.39 -0.02 3.52 16 39 H 0.06 2.20 8.10 -2.39 -0.02 2.18 16 40 H 0.06 2.29 8.10 -2.39 -0.02 2.27 16 41 H 0.08 1.95 7.66 -2.39 -0.02 1.93 16 42 H 0.07 1.94 7.66 -2.38 -0.02 1.92 16 43 H 0.14 3.01 6.31 -2.91 -0.02 2.99 16 44 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 45 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 46 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 51 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -67.14 415.53 4.84 -62.30 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.91 Total: 30.77 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 5.75 Total: 0.48 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -1.31 Total: -71.96 kcal Atomic # 8 Polarization: -61.17 SS G_CDS: -2.54 Total: -63.72 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -67.14 4.84 -62.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457203399.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.699 kcal (2) G-P(sol) polarization free energy of solvation -67.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds