Wall clock time and date at job start Wed Apr 1 2020 05:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47515 * 2 1 4 4 O 1.42903 * 109.47223 * 120.00120 * 2 1 3 5 5 C 1.35903 * 116.99655 * 276.08483 * 4 2 1 6 6 C 1.38750 * 120.05679 * 355.64419 * 5 4 2 7 7 C 1.38129 * 119.94531 * 180.02562 * 6 5 4 8 8 C 1.38286 * 120.05235 * 0.27232 * 7 6 5 9 9 C 1.38250 * 120.11181 * 359.45225 * 8 7 6 10 10 C 1.50700 * 119.97200 * 180.25186 * 9 8 7 11 11 O 1.42900 * 109.47241 * 270.29673 * 10 9 8 12 12 C 1.38162 * 120.05627 * 0.55001 * 9 8 7 13 13 C 1.50699 * 109.47431 * 239.99670 * 2 1 3 14 14 O 1.21279 * 120.00414 * 249.37106 * 13 2 1 15 15 N 1.34777 * 119.99834 * 69.36251 * 13 2 1 16 16 C 1.46925 * 120.63299 * 185.34046 * 15 13 2 17 17 C 1.52761 * 109.01085 * 233.58551 * 16 15 13 18 18 C 1.53035 * 109.38288 * 305.58760 * 17 16 15 19 19 C 1.52996 * 109.44955 * 181.25218 * 18 17 16 20 20 C 1.50701 * 109.46841 * 64.94031 * 19 18 17 21 21 H 1.07993 * 120.00109 * 359.97438 * 20 19 18 22 22 C 1.37887 * 119.99452 * 180.02562 * 20 19 18 23 23 N 1.31516 * 120.00199 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99451 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47215 * 90.00160 * 24 22 20 26 26 H 1.48500 * 109.47266 * 209.99818 * 24 22 20 27 27 H 1.48502 * 109.47599 * 329.99982 * 24 22 20 28 28 C 1.53043 * 109.53961 * 61.23954 * 18 17 16 29 29 C 1.46925 * 120.62883 * 5.61918 * 15 13 2 30 30 H 1.08997 * 109.47180 * 294.99183 * 1 2 3 31 31 H 1.09006 * 109.47118 * 54.98925 * 1 2 3 32 32 H 1.09005 * 109.47289 * 174.99036 * 1 2 3 33 33 H 1.08001 * 120.02679 * 0.02562 * 6 5 4 34 34 H 1.07996 * 119.97355 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.94325 * 179.70156 * 8 7 6 36 36 H 1.09001 * 109.47101 * 30.29370 * 10 9 8 37 37 H 1.08995 * 109.47055 * 150.29432 * 10 9 8 38 38 H 0.96701 * 114.00080 * 179.97438 * 11 10 9 39 39 H 1.08000 * 120.02824 * 179.74496 * 12 9 8 40 40 H 1.08998 * 109.58626 * 353.42285 * 16 15 13 41 41 H 1.09004 * 109.58698 * 113.84515 * 16 15 13 42 42 H 1.09000 * 109.56387 * 185.55308 * 17 16 15 43 43 H 1.08998 * 109.35767 * 65.49838 * 17 16 15 44 44 H 1.09006 * 109.46072 * 301.22049 * 18 17 16 45 45 H 1.09007 * 109.47233 * 184.93454 * 19 18 17 46 46 H 1.08999 * 109.47490 * 304.93792 * 19 18 17 47 47 H 0.96999 * 119.99654 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.49728 * 178.68276 * 28 18 17 49 49 H 1.08998 * 109.49763 * 58.58137 * 28 18 17 50 50 H 1.08997 * 109.59200 * 246.15144 * 29 15 13 51 51 H 1.09003 * 109.59092 * 6.44229 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0910 0.0569 2.3096 6 6 1.8097 1.4154 2.2884 7 6 1.8970 2.1559 3.4512 8 6 2.2697 1.5453 4.6346 9 6 2.5449 0.1907 4.6596 10 6 2.9454 -0.4726 5.9522 11 8 4.3661 -0.4180 6.0954 12 6 2.4592 -0.5543 3.4992 13 6 2.0324 -0.7105 -1.2304 14 8 2.5834 -1.7859 -1.1272 15 7 1.8692 -0.1508 -2.4455 16 6 2.2472 -0.8811 -3.6631 17 6 3.1942 -0.0134 -4.4900 18 6 2.5412 1.3461 -4.7495 19 6 3.4753 2.2051 -5.6040 20 6 3.6367 1.5729 -6.9625 21 1 3.1246 0.6504 -7.1930 22 6 4.4390 2.1717 -7.9106 23 7 5.0630 3.2948 -7.6296 24 14 4.6397 1.3876 -9.5941 25 1 3.5935 1.9083 -10.5105 26 1 5.9819 1.7174 -10.1370 27 1 4.5030 -0.0861 -9.4734 28 6 2.2781 2.0503 -3.4164 29 6 1.3154 1.2037 -2.5776 30 1 -0.3633 0.4342 0.9314 31 1 -0.3634 0.5896 -0.8417 32 1 -0.3634 -1.0238 -0.0897 33 1 1.5229 1.8936 1.3635 34 1 1.6786 3.2134 3.4351 35 1 2.3421 2.1269 5.5418 36 1 2.4758 0.0467 6.7876 37 1 2.6208 -1.5130 5.9424 38 1 4.6955 -0.8269 6.9074 39 1 2.6782 -1.6117 3.5183 40 1 2.7486 -1.8100 -3.3911 41 1 1.3547 -1.1030 -4.2481 42 1 3.4026 -0.5043 -5.4407 43 1 4.1254 0.1290 -3.9417 44 1 1.5978 1.2013 -5.2761 45 1 3.0507 3.2028 -5.7158 46 1 4.4486 2.2768 -5.1187 47 1 5.6277 3.7158 -8.2965 48 1 1.8345 3.0283 -3.6030 49 1 3.2179 2.1732 -2.8782 50 1 0.3454 1.1554 -3.0723 51 1 1.1999 1.6492 -1.5895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514862114.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:54 Heat of formation + Delta-G solvation = -127.930118 kcal Electronic energy + Delta-G solvation = -30424.523888 eV Core-core repulsion = 26287.836891 eV Total energy + Delta-G solvation = -4136.686997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.94319 -40.85568 -39.20078 -38.48497 -37.23270 -35.83544 -34.28354 -33.25042 -32.55390 -31.81952 -30.74726 -29.80306 -27.02670 -26.72583 -25.60814 -24.17226 -23.56276 -23.47283 -22.23552 -21.09599 -20.02410 -19.33595 -18.48347 -18.38159 -17.96725 -17.52613 -16.95935 -16.84977 -16.54693 -16.44601 -15.94393 -15.64671 -15.31220 -15.25354 -14.85265 -14.64142 -14.52089 -14.45109 -14.31490 -14.26003 -13.95022 -13.65844 -13.55236 -13.26669 -13.15948 -13.00476 -12.77315 -12.64513 -12.50454 -12.44487 -12.33949 -12.18998 -12.11113 -11.81056 -11.66068 -11.33261 -11.06208 -11.02334 -10.98819 -10.69415 -10.51525 -9.95078 -9.70667 -9.22634 -8.17216 -6.25827 0.22015 0.43279 1.35295 1.39941 1.41011 1.48252 1.51223 2.39706 2.41868 2.66161 3.16579 3.22990 3.52484 3.59039 3.79982 3.86023 3.90231 4.00735 4.02982 4.06761 4.09611 4.17639 4.23335 4.37301 4.39717 4.43010 4.48728 4.53642 4.61555 4.63439 4.68086 4.75865 4.79673 4.86956 4.95807 5.02004 5.06913 5.10130 5.27191 5.28941 5.32861 5.37856 5.42492 5.52456 5.56360 5.57468 5.75127 5.81146 5.90494 6.23491 6.29923 6.38565 6.90207 6.91150 6.98475 7.42597 8.94367 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.019382 B = 0.001939 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.304618 B =14435.045758 C =14690.953465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.068 3.932 3 H 0.119 0.881 4 O -0.315 6.315 5 C 0.108 3.892 6 C -0.209 4.209 7 C -0.080 4.080 8 C -0.143 4.143 9 C -0.068 4.068 10 C 0.116 3.884 11 O -0.592 6.592 12 C -0.154 4.154 13 C 0.513 3.487 14 O -0.575 6.575 15 N -0.598 5.598 16 C 0.119 3.881 17 C -0.112 4.112 18 C -0.074 4.074 19 C 0.032 3.968 20 C -0.528 4.528 21 H 0.063 0.937 22 C -0.003 4.003 23 N -0.935 5.935 24 Si 0.957 3.043 25 H -0.272 1.272 26 H -0.288 1.288 27 H -0.264 1.264 28 C -0.128 4.128 29 C 0.105 3.895 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.401 0.599 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.035 0.965 44 H 0.070 0.930 45 H -0.005 1.005 46 H -0.019 1.019 47 H 0.261 0.739 48 H 0.088 0.912 49 H 0.048 0.952 50 H 0.102 0.898 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.424 -2.761 27.468 30.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.009 3.991 3 H 0.136 0.864 4 O -0.229 6.229 5 C 0.063 3.937 6 C -0.228 4.228 7 C -0.097 4.097 8 C -0.161 4.161 9 C -0.068 4.068 10 C 0.039 3.961 11 O -0.401 6.401 12 C -0.173 4.173 13 C 0.301 3.699 14 O -0.455 6.455 15 N -0.332 5.332 16 C -0.003 4.003 17 C -0.150 4.150 18 C -0.092 4.092 19 C -0.005 4.005 20 C -0.566 4.566 21 H 0.081 0.919 22 C -0.201 4.201 23 N -0.576 5.576 24 Si 0.783 3.217 25 H -0.197 1.197 26 H -0.214 1.214 27 H -0.189 1.189 28 C -0.166 4.166 29 C -0.016 4.016 30 H 0.110 0.890 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.167 0.833 34 H 0.175 0.825 35 H 0.165 0.835 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.251 0.749 39 H 0.139 0.861 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.054 0.946 44 H 0.088 0.912 45 H 0.013 0.987 46 H 0.000 1.000 47 H 0.069 0.931 48 H 0.107 0.893 49 H 0.066 0.934 50 H 0.120 0.880 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.035 -3.120 26.848 30.007 hybrid contribution 0.962 -0.476 -0.946 1.431 sum -12.072 -3.596 25.902 28.802 Atomic orbital electron populations 1.22346 0.89819 1.04430 1.05866 1.22360 0.97609 0.97088 0.82088 0.86371 1.86175 1.81383 1.38988 1.16337 1.19249 0.97324 0.91228 0.85924 1.21577 1.07508 0.92350 1.01328 1.21330 0.96099 1.01084 0.91220 1.21313 1.01398 0.93682 0.99699 1.19738 0.98276 0.94492 0.94267 1.21069 0.81655 0.99710 0.93650 1.86526 1.21516 1.83688 1.48387 1.20441 1.05435 1.00945 0.90436 1.20630 0.78626 0.85630 0.85005 1.90689 1.44028 1.24240 1.86501 1.48132 1.62496 1.17659 1.04879 1.21546 0.99324 0.94961 0.84501 1.21688 0.97447 0.96588 0.99266 1.21053 0.98703 0.94301 0.95157 1.19024 0.93385 0.94353 0.93728 1.21687 1.27417 1.08589 0.98870 0.91854 1.25934 0.95722 0.95556 1.02838 1.70095 1.31900 1.19588 1.35988 0.85561 0.77274 0.79143 0.79768 1.19734 1.21399 1.18874 1.21979 0.99484 0.99569 0.95530 1.22195 0.97463 0.79644 1.02345 0.89042 0.87398 0.91928 0.83270 0.82488 0.83533 0.89902 0.91738 0.74871 0.86079 0.90892 0.89238 0.91283 0.94603 0.91211 0.98674 1.00030 0.93066 0.89321 0.93353 0.88034 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 9.02 71.98 0.65 -1.83 16 2 C 0.07 1.49 1.81 29.85 0.05 1.55 16 3 H 0.12 2.05 4.69 -2.39 -0.01 2.04 16 4 O -0.32 -8.83 9.36 -73.59 -0.69 -9.52 16 5 C 0.11 2.55 6.51 22.51 0.15 2.70 16 6 C -0.21 -3.70 8.46 22.37 0.19 -3.51 16 7 C -0.08 -1.16 10.04 22.26 0.22 -0.93 16 8 C -0.14 -2.19 9.70 22.28 0.22 -1.98 16 9 C -0.07 -1.25 5.51 -19.88 -0.11 -1.35 16 10 C 0.12 1.50 7.17 71.24 0.51 2.01 16 11 O -0.59 -9.18 13.64 -148.98 -2.03 -11.21 16 12 C -0.15 -3.55 9.64 22.37 0.22 -3.34 16 13 C 0.51 15.32 7.04 87.66 0.62 15.94 16 14 O -0.58 -22.86 15.94 15.84 0.25 -22.60 16 15 N -0.60 -15.93 2.98 -819.72 -2.44 -18.37 16 16 C 0.12 3.57 6.41 86.22 0.55 4.12 16 17 C -0.11 -4.06 5.17 30.53 0.16 -3.90 16 18 C -0.07 -2.70 2.10 -10.77 -0.02 -2.72 16 19 C 0.03 1.61 4.45 29.85 0.13 1.74 16 20 C -0.53 -28.79 8.39 25.60 0.21 -28.58 16 21 H 0.06 3.29 7.05 -2.91 -0.02 3.27 16 22 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 23 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 24 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 27 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 28 C -0.13 -3.56 5.36 30.68 0.16 -3.39 16 29 C 0.10 2.07 5.16 86.37 0.45 2.51 16 30 H 0.09 1.09 7.50 -2.39 -0.02 1.07 16 31 H 0.11 1.05 6.35 -2.38 -0.02 1.03 16 32 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.15 1.93 5.78 -2.91 -0.02 1.91 16 34 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.08 0.62 8.09 -2.39 -0.02 0.60 16 37 H 0.06 0.70 8.08 -2.39 -0.02 0.68 16 38 H 0.40 2.01 9.12 -74.06 -0.68 1.34 16 39 H 0.12 2.87 8.06 -2.91 -0.02 2.84 16 40 H 0.07 2.42 7.00 -2.39 -0.02 2.41 16 41 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.07 2.71 6.91 -2.39 -0.02 2.70 16 43 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 45 H -0.01 -0.27 8.14 -2.38 -0.02 -0.29 16 46 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 47 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 48 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.11 1.44 5.06 -2.39 -0.01 1.42 16 Total: -1.00 -80.52 404.84 2.49 -78.04 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.26 Total: 14.55 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 4.82 Total: -20.70 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -2.16 Total: -74.59 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -2.47 Total: -43.33 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -80.52 2.49 -78.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514862114.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.895 kcal (2) G-P(sol) polarization free energy of solvation -80.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds