Wall clock time and date at job start Wed Apr 1 2020 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21250 * 120.00269 * 2 1 4 4 C 1.47180 * 119.99612 * 179.97438 * 2 1 3 5 5 C 1.39876 * 120.14587 * 359.97438 * 4 2 1 6 6 C 1.37901 * 119.93815 * 180.02562 * 5 4 2 7 7 C 1.38338 * 120.23226 * 359.74059 * 6 5 4 8 8 C 1.38853 * 120.29428 * 0.51568 * 7 6 5 9 9 O 1.35903 * 119.97030 * 179.75962 * 8 7 6 10 10 C 1.42900 * 117.00260 * 359.72984 * 9 8 7 11 11 C 1.52999 * 109.47526 * 179.97438 * 10 9 8 12 12 H 1.08997 * 109.47403 * 54.99823 * 11 10 9 13 13 O 1.42901 * 109.46775 * 294.99713 * 11 10 9 14 14 C 1.53002 * 109.47379 * 174.99920 * 11 10 9 15 15 N 1.46895 * 109.47153 * 182.66462 * 14 11 10 16 16 C 1.46846 * 110.99786 * 75.79529 * 15 14 11 17 17 C 1.53037 * 109.51508 * 185.84500 * 16 15 14 18 18 C 1.53129 * 109.27722 * 300.80207 * 17 16 15 19 19 C 1.50699 * 109.57152 * 177.60108 * 18 17 16 20 20 H 1.08002 * 119.99951 * 240.29134 * 19 18 17 21 21 C 1.37871 * 120.00095 * 60.29759 * 19 18 17 22 22 N 1.31510 * 120.00264 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99820 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46848 * 90.00119 * 23 21 19 25 25 H 1.48509 * 109.47077 * 209.99919 * 23 21 19 26 26 H 1.48494 * 109.47214 * 329.99949 * 23 21 19 27 27 C 1.53116 * 109.15065 * 57.66813 * 18 17 16 28 28 C 1.46848 * 110.99890 * 199.99970 * 15 14 11 29 29 C 1.38428 * 120.05756 * 359.49008 * 8 7 6 30 30 H 1.08996 * 109.47344 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47078 * 300.00176 * 1 2 3 32 32 H 1.09005 * 109.46558 * 59.99894 * 1 2 3 33 33 H 1.07994 * 120.03384 * 0.02562 * 5 4 2 34 34 H 1.07996 * 119.88202 * 180.02562 * 6 5 4 35 35 H 1.07994 * 119.84944 * 180.27562 * 7 6 5 36 36 H 1.09000 * 109.47483 * 59.99351 * 10 9 8 37 37 H 1.09002 * 109.47000 * 299.99553 * 10 9 8 38 38 H 0.96707 * 113.99973 * 299.99964 * 13 11 10 39 39 H 1.09003 * 109.46978 * 62.66392 * 14 11 10 40 40 H 1.09000 * 109.46999 * 302.67095 * 14 11 10 41 41 H 1.09004 * 109.46248 * 305.84756 * 16 15 14 42 42 H 1.08995 * 109.46883 * 65.83010 * 16 15 14 43 43 H 1.08999 * 109.50454 * 60.75192 * 17 16 15 44 44 H 1.08997 * 109.50708 * 180.87181 * 17 16 15 45 45 H 1.08999 * 109.52852 * 297.76463 * 18 17 16 46 46 H 0.97003 * 120.00620 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.50440 * 182.39876 * 27 18 17 48 48 H 1.09007 * 109.53696 * 62.30339 * 27 18 17 49 49 H 1.09001 * 109.46354 * 294.17904 * 28 15 14 50 50 H 1.08998 * 109.46313 * 54.15736 * 28 15 14 51 51 H 1.07998 * 120.11395 * 180.23288 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5465 -2.4877 0.0017 6 6 2.2402 -3.6795 0.0027 7 6 3.6236 -3.6802 -0.0027 8 6 4.3247 -2.4817 0.0016 9 8 5.6837 -2.4901 0.0011 10 6 6.3246 -3.7673 0.0022 11 6 7.8426 -3.5762 0.0009 12 1 8.1301 -2.9450 0.8417 13 8 8.2432 -2.9533 -1.2212 14 6 8.5282 -4.9381 0.1278 15 7 9.9837 -4.7497 0.1907 16 6 10.3942 -4.2605 1.5130 17 6 11.8902 -3.9380 1.4970 18 6 12.6758 -5.2010 1.1330 19 6 14.1456 -4.8771 1.0576 20 1 14.6843 -5.0245 0.1333 21 6 14.8026 -4.3927 2.1687 22 7 14.1466 -4.2128 3.2942 23 14 16.6248 -3.9919 2.0754 24 1 16.7996 -2.5764 1.6619 25 1 17.2460 -4.1986 3.4083 26 1 17.2771 -4.8820 1.0818 27 6 12.1951 -5.7174 -0.2259 28 6 10.6903 -5.9882 -0.1602 29 6 3.6405 -1.2783 0.0006 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 0.4665 -2.4911 0.0017 34 1 1.7016 -4.6156 0.0031 35 1 4.1606 -4.6172 -0.0063 36 1 6.0280 -4.3235 -0.8870 37 1 6.0286 -4.3216 0.8929 38 1 8.0187 -3.4607 -2.0133 39 1 8.2784 -5.5526 -0.7372 40 1 8.1863 -5.4338 1.0364 41 1 9.8313 -3.3598 1.7580 42 1 10.1961 -5.0275 2.2617 43 1 12.0871 -3.1612 0.7580 44 1 12.1980 -3.5896 2.4828 45 1 12.5096 -5.9650 1.8926 46 1 14.6088 -3.8716 4.0759 47 1 12.7206 -6.6404 -0.4711 48 1 12.3970 -4.9691 -0.9924 49 1 10.4906 -6.7471 0.5964 50 1 10.3425 -6.3424 -1.1305 51 1 4.1849 -0.3455 0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541022513.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:04 Heat of formation + Delta-G solvation = -100.020838 kcal Electronic energy + Delta-G solvation = -29664.341733 eV Core-core repulsion = 25528.864973 eV Total energy + Delta-G solvation = -4135.476760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.78407 -39.65553 -38.68395 -37.59146 -36.48952 -33.81562 -32.15670 -31.83690 -31.31391 -29.94850 -29.82049 -29.15841 -26.62489 -24.88714 -23.78940 -22.83639 -22.38201 -21.80429 -20.91807 -20.27930 -18.60252 -18.30688 -17.17148 -16.71837 -16.50349 -16.35016 -16.08162 -15.80882 -15.43749 -15.24092 -14.92120 -14.87154 -14.41989 -14.20399 -14.09963 -13.82532 -13.36867 -13.11519 -12.96890 -12.88422 -12.77306 -12.51226 -12.48299 -12.23018 -12.19902 -11.65803 -11.48967 -11.43784 -11.30494 -10.92782 -10.89538 -10.75088 -10.50215 -10.21559 -10.20575 -10.02900 -9.92504 -9.49014 -9.41699 -8.96404 -8.69119 -8.64849 -8.27604 -7.78557 -5.95341 -4.00487 0.19371 0.98327 1.98954 2.69243 3.33624 3.35112 3.40159 3.43202 3.63725 4.16258 4.30075 4.37918 4.46079 4.46699 4.47473 4.61310 4.69397 4.75519 4.85190 4.94174 4.97169 5.02225 5.06139 5.16944 5.22431 5.35201 5.44821 5.48197 5.54269 5.66967 5.80098 5.84360 5.86666 5.90401 5.93429 6.05108 6.16873 6.21351 6.27725 6.60768 6.61550 6.84914 7.02782 7.07797 7.09153 7.16226 7.42875 7.58176 7.64189 7.74697 7.84268 8.06640 8.17167 8.50322 9.03015 9.63960 11.10939 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.022628 B = 0.001666 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.105173 B =16805.141989 C =17487.672411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.395 3.605 3 O -0.453 6.453 4 C -0.135 4.135 5 C -0.118 4.118 6 C -0.092 4.092 7 C -0.181 4.181 8 C 0.124 3.876 9 O -0.298 6.298 10 C 0.027 3.973 11 C 0.117 3.883 12 H 0.110 0.890 13 O -0.533 6.533 14 C 0.027 3.973 15 N -0.524 5.524 16 C 0.056 3.944 17 C -0.104 4.104 18 C 0.048 3.952 19 C -0.510 4.510 20 H 0.054 0.946 21 C 0.061 3.939 22 N -0.892 5.892 23 Si 0.890 3.110 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.275 1.275 27 C -0.106 4.106 28 C 0.062 3.938 29 C -0.094 4.094 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.367 0.633 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.056 0.944 42 H 0.022 0.978 43 H 0.045 0.955 44 H 0.092 0.908 45 H 0.020 0.980 46 H 0.259 0.741 47 H 0.050 0.950 48 H 0.058 0.942 49 H 0.023 0.977 50 H 0.056 0.944 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.914 -0.906 -6.831 30.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.272 3.728 3 O -0.328 6.328 4 C -0.136 4.136 5 C -0.136 4.136 6 C -0.110 4.110 7 C -0.200 4.200 8 C 0.078 3.922 9 O -0.211 6.211 10 C -0.049 4.049 11 C 0.057 3.943 12 H 0.127 0.873 13 O -0.336 6.336 14 C -0.103 4.103 15 N -0.248 5.248 16 C -0.071 4.071 17 C -0.142 4.142 18 C 0.029 3.971 19 C -0.548 4.548 20 H 0.073 0.927 21 C -0.140 4.140 22 N -0.532 5.532 23 Si 0.718 3.282 24 H -0.207 1.207 25 H -0.214 1.214 26 H -0.200 1.200 27 C -0.144 4.144 28 C -0.065 4.065 29 C -0.113 4.113 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.213 0.787 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.064 0.936 44 H 0.111 0.889 45 H 0.038 0.962 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.041 0.959 50 H 0.075 0.925 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -29.047 0.675 -6.572 29.789 hybrid contribution 0.393 -1.316 0.356 1.419 sum -28.654 -0.641 -6.216 29.327 Atomic orbital electron populations 1.22237 0.93445 1.04941 1.05112 1.22512 0.91748 0.87438 0.71052 1.90571 1.72070 1.34297 1.35852 1.20311 0.93349 0.95135 1.04791 1.21382 1.00165 0.91294 1.00746 1.20929 0.93359 0.98336 0.98372 1.21563 0.95609 0.97387 1.05444 1.18969 0.83226 0.93740 0.96253 1.86216 1.15394 1.31486 1.87983 1.23725 0.95153 0.84096 1.01951 1.21906 0.87407 0.95251 0.89746 0.87258 1.86727 1.83283 1.49110 1.14509 1.22626 0.91157 0.95453 1.01034 1.61846 1.02010 1.30400 1.30568 1.22346 1.00117 0.97706 0.86923 1.21659 0.88949 1.00037 1.03567 1.18686 0.94364 0.93295 0.90731 1.21204 0.93993 1.42858 0.96769 0.92746 1.24964 0.97980 0.95612 0.95459 1.69870 1.35748 1.46233 1.01323 0.86631 0.85642 0.78751 0.77176 1.20701 1.21358 1.20010 1.21680 0.91289 1.00110 1.01334 1.22142 0.96748 0.89346 0.98296 1.20702 0.92805 0.97274 1.00514 0.89651 0.88615 0.88631 0.84692 0.85043 0.84962 0.91580 0.91086 0.78684 0.90944 0.94155 0.92597 0.95984 0.93614 0.88941 0.96238 0.93116 0.93180 0.92328 0.95907 0.92515 0.83957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.86 10.19 36.01 0.37 -0.49 16 2 C 0.39 3.41 7.23 -30.68 -0.22 3.18 16 3 O -0.45 -5.68 17.09 5.58 0.10 -5.58 16 4 C -0.13 -1.18 5.87 -105.08 -0.62 -1.80 16 5 C -0.12 -0.73 9.45 -39.09 -0.37 -1.10 16 6 C -0.09 -0.58 10.02 -39.67 -0.40 -0.98 16 7 C -0.18 -1.45 9.04 -39.32 -0.36 -1.80 16 8 C 0.12 1.31 6.68 -39.28 -0.26 1.05 16 9 O -0.30 -3.58 10.10 -24.28 -0.25 -3.82 16 10 C 0.03 0.25 4.37 37.16 0.16 0.42 16 11 C 0.12 1.44 3.32 -26.73 -0.09 1.35 16 12 H 0.11 1.56 6.76 -51.93 -0.35 1.21 16 13 O -0.53 -7.38 13.22 -40.08 -0.53 -7.91 16 14 C 0.03 0.33 4.65 -3.83 -0.02 0.31 16 15 N -0.52 -8.93 4.50 -234.67 -1.06 -9.99 16 16 C 0.06 1.09 5.29 -3.83 -0.02 1.07 16 17 C -0.10 -2.47 5.12 -26.65 -0.14 -2.61 16 18 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 19 C -0.51 -14.10 8.56 -34.44 -0.29 -14.39 16 20 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 22 N -0.89 -25.56 11.37 55.43 0.63 -24.93 16 23 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C -0.11 -2.21 5.32 -26.65 -0.14 -2.36 16 28 C 0.06 1.07 5.43 -3.83 -0.02 1.05 16 29 C -0.09 -1.03 9.54 -38.94 -0.37 -1.40 16 30 H 0.08 0.17 5.60 -51.93 -0.29 -0.12 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.14 0.42 5.92 -52.49 -0.31 0.11 16 34 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 35 H 0.13 0.82 6.27 -52.49 -0.33 0.50 16 36 H 0.07 0.49 7.64 -51.93 -0.40 0.09 16 37 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 38 H 0.37 3.62 9.05 45.56 0.41 4.03 16 39 H 0.07 0.75 7.79 -51.93 -0.40 0.35 16 40 H 0.04 0.48 8.00 -51.93 -0.42 0.06 16 41 H 0.06 1.02 6.68 -51.93 -0.35 0.67 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.09 2.45 6.17 -51.93 -0.32 2.13 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.84 7.93 -51.93 -0.41 0.43 16 51 H 0.14 1.70 7.65 -52.49 -0.40 1.30 16 LS Contribution 407.06 15.07 6.13 6.13 Total: -1.00 -33.28 407.06 -10.38 -43.67 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.31 Total: 1.87 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -3.08 Total: -15.92 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: -0.42 Total: -34.92 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.68 Total: -17.32 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.28 -10.38 -43.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541022513.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.355 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds