Wall clock time and date at job start Wed Apr 1 2020 05:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21250 * 120.00269 * 2 1 4 4 C 1.47180 * 119.99612 * 179.97438 * 2 1 3 5 5 C 1.39876 * 120.14587 * 359.97438 * 4 2 1 6 6 C 1.37901 * 119.93815 * 180.02562 * 5 4 2 7 7 C 1.38338 * 120.23226 * 359.74059 * 6 5 4 8 8 C 1.38853 * 120.29428 * 0.51568 * 7 6 5 9 9 O 1.35903 * 119.97030 * 179.75962 * 8 7 6 10 10 C 1.42900 * 117.00260 * 359.72984 * 9 8 7 11 11 C 1.52999 * 109.47526 * 179.97438 * 10 9 8 12 12 H 1.08997 * 109.47403 * 54.99823 * 11 10 9 13 13 O 1.42901 * 109.46775 * 294.99713 * 11 10 9 14 14 C 1.53002 * 109.47379 * 174.99920 * 11 10 9 15 15 N 1.46895 * 109.47153 * 182.66462 * 14 11 10 16 16 C 1.46846 * 110.99786 * 75.79529 * 15 14 11 17 17 C 1.53037 * 109.51508 * 185.84500 * 16 15 14 18 18 C 1.53129 * 109.27722 * 300.80207 * 17 16 15 19 19 C 1.50699 * 109.57152 * 177.60108 * 18 17 16 20 20 H 1.08002 * 119.99951 * 240.29134 * 19 18 17 21 21 C 1.37871 * 120.00095 * 60.29759 * 19 18 17 22 22 N 1.31510 * 120.00264 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99820 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46848 * 90.00119 * 23 21 19 25 25 H 1.48509 * 109.47077 * 209.99919 * 23 21 19 26 26 H 1.48494 * 109.47214 * 329.99949 * 23 21 19 27 27 C 1.53116 * 109.15065 * 57.66813 * 18 17 16 28 28 C 1.46848 * 110.99890 * 199.99970 * 15 14 11 29 29 C 1.38428 * 120.05756 * 359.49008 * 8 7 6 30 30 H 1.08996 * 109.47344 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47078 * 300.00176 * 1 2 3 32 32 H 1.09005 * 109.46558 * 59.99894 * 1 2 3 33 33 H 1.07994 * 120.03384 * 0.02562 * 5 4 2 34 34 H 1.07996 * 119.88202 * 180.02562 * 6 5 4 35 35 H 1.07994 * 119.84944 * 180.27562 * 7 6 5 36 36 H 1.09000 * 109.47483 * 59.99351 * 10 9 8 37 37 H 1.09002 * 109.47000 * 299.99553 * 10 9 8 38 38 H 0.96707 * 113.99973 * 299.99964 * 13 11 10 39 39 H 1.09003 * 109.46978 * 62.66392 * 14 11 10 40 40 H 1.09000 * 109.46999 * 302.67095 * 14 11 10 41 41 H 1.09004 * 109.46248 * 305.84756 * 16 15 14 42 42 H 1.08995 * 109.46883 * 65.83010 * 16 15 14 43 43 H 1.08999 * 109.50454 * 60.75192 * 17 16 15 44 44 H 1.08997 * 109.50708 * 180.87181 * 17 16 15 45 45 H 1.08999 * 109.52852 * 297.76463 * 18 17 16 46 46 H 0.97003 * 120.00620 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.50440 * 182.39876 * 27 18 17 48 48 H 1.09007 * 109.53696 * 62.30339 * 27 18 17 49 49 H 1.09001 * 109.46354 * 294.17904 * 28 15 14 50 50 H 1.08998 * 109.46313 * 54.15736 * 28 15 14 51 51 H 1.07998 * 120.11395 * 180.23288 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5465 -2.4877 0.0017 6 6 2.2402 -3.6795 0.0027 7 6 3.6236 -3.6802 -0.0027 8 6 4.3247 -2.4817 0.0016 9 8 5.6837 -2.4901 0.0011 10 6 6.3246 -3.7673 0.0022 11 6 7.8426 -3.5762 0.0009 12 1 8.1301 -2.9450 0.8417 13 8 8.2432 -2.9533 -1.2212 14 6 8.5282 -4.9381 0.1278 15 7 9.9837 -4.7497 0.1907 16 6 10.3942 -4.2605 1.5130 17 6 11.8902 -3.9380 1.4970 18 6 12.6758 -5.2010 1.1330 19 6 14.1456 -4.8771 1.0576 20 1 14.6843 -5.0245 0.1333 21 6 14.8026 -4.3927 2.1687 22 7 14.1466 -4.2128 3.2942 23 14 16.6248 -3.9919 2.0754 24 1 16.7996 -2.5764 1.6619 25 1 17.2460 -4.1986 3.4083 26 1 17.2771 -4.8820 1.0818 27 6 12.1951 -5.7174 -0.2259 28 6 10.6903 -5.9882 -0.1602 29 6 3.6405 -1.2783 0.0006 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 0.4665 -2.4911 0.0017 34 1 1.7016 -4.6156 0.0031 35 1 4.1606 -4.6172 -0.0063 36 1 6.0280 -4.3235 -0.8870 37 1 6.0286 -4.3216 0.8929 38 1 8.0187 -3.4607 -2.0133 39 1 8.2784 -5.5526 -0.7372 40 1 8.1863 -5.4338 1.0364 41 1 9.8313 -3.3598 1.7580 42 1 10.1961 -5.0275 2.2617 43 1 12.0871 -3.1612 0.7580 44 1 12.1980 -3.5896 2.4828 45 1 12.5096 -5.9650 1.8926 46 1 14.6088 -3.8716 4.0759 47 1 12.7206 -6.6404 -0.4711 48 1 12.3970 -4.9691 -0.9924 49 1 10.4906 -6.7471 0.5964 50 1 10.3425 -6.3424 -1.1305 51 1 4.1849 -0.3455 0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541022513.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:03 Heat of formation + Delta-G solvation = -123.214076 kcal Electronic energy + Delta-G solvation = -29665.347468 eV Core-core repulsion = 25528.864973 eV Total energy + Delta-G solvation = -4136.482494 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.45701 -40.46407 -39.92776 -38.50834 -37.50595 -35.56609 -33.40401 -32.73936 -32.17827 -31.48119 -30.92902 -29.75156 -28.08247 -26.19637 -24.70580 -23.90571 -23.43080 -23.27342 -22.11869 -20.94579 -20.35170 -18.96980 -18.46650 -18.00534 -17.54287 -17.09899 -16.81319 -16.75169 -16.53084 -16.22792 -16.13430 -15.90937 -15.67893 -15.33795 -14.99688 -14.78837 -14.71698 -14.41110 -14.29410 -13.98989 -13.89669 -13.46926 -13.30653 -13.07823 -13.00774 -12.89728 -12.82600 -12.71415 -12.50570 -12.38187 -12.18783 -12.00628 -11.98021 -11.87113 -11.73016 -11.33887 -11.04037 -10.86017 -10.78911 -10.63330 -10.38307 -10.10452 -9.29685 -9.12683 -8.08963 -6.22083 -0.43337 0.38460 1.37501 1.39438 1.40789 1.50404 1.97009 2.42867 2.75427 2.95967 3.14985 3.18258 3.53791 3.71331 3.80592 3.87800 3.97227 4.02794 4.08718 4.15122 4.18850 4.23692 4.30868 4.33649 4.39719 4.44770 4.48269 4.56646 4.65929 4.66513 4.77122 4.80081 4.86612 4.87761 4.95011 5.02122 5.07111 5.11601 5.23480 5.25346 5.27963 5.34503 5.38920 5.56220 5.61970 5.68616 5.99847 6.01824 6.26373 6.32435 6.39233 6.40719 6.48515 6.89759 6.95531 7.45675 8.95531 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.022628 B = 0.001666 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.105173 B =16805.141989 C =17487.672411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.392 3.608 3 O -0.509 6.509 4 C -0.151 4.151 5 C -0.101 4.101 6 C -0.087 4.087 7 C -0.178 4.178 8 C 0.101 3.899 9 O -0.331 6.331 10 C 0.033 3.967 11 C 0.120 3.880 12 H 0.078 0.922 13 O -0.561 6.561 14 C 0.031 3.969 15 N -0.537 5.537 16 C 0.070 3.930 17 C -0.095 4.095 18 C 0.044 3.956 19 C -0.534 4.534 20 H 0.050 0.950 21 C 0.011 3.989 22 N -0.918 5.918 23 Si 0.952 3.048 24 H -0.279 1.279 25 H -0.283 1.283 26 H -0.267 1.267 27 C -0.101 4.101 28 C 0.069 3.931 29 C -0.129 4.129 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.176 0.824 34 H 0.171 0.829 35 H 0.155 0.845 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.384 0.616 39 H 0.107 0.893 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.020 0.980 43 H 0.023 0.977 44 H 0.058 0.942 45 H -0.009 1.009 46 H 0.259 0.741 47 H 0.055 0.945 48 H 0.047 0.953 49 H 0.026 0.974 50 H 0.094 0.906 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.223 -3.590 -8.067 34.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.273 3.727 3 O -0.388 6.388 4 C -0.152 4.152 5 C -0.119 4.119 6 C -0.105 4.105 7 C -0.196 4.196 8 C 0.056 3.944 9 O -0.245 6.245 10 C -0.043 4.043 11 C 0.059 3.941 12 H 0.096 0.904 13 O -0.367 6.367 14 C -0.097 4.097 15 N -0.262 5.262 16 C -0.058 4.058 17 C -0.134 4.134 18 C 0.025 3.975 19 C -0.572 4.572 20 H 0.069 0.931 21 C -0.187 4.187 22 N -0.558 5.558 23 Si 0.778 3.222 24 H -0.205 1.205 25 H -0.208 1.208 26 H -0.192 1.192 27 C -0.139 4.139 28 C -0.058 4.058 29 C -0.148 4.148 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.193 0.807 34 H 0.188 0.812 35 H 0.172 0.828 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.232 0.768 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.038 0.962 43 H 0.042 0.958 44 H 0.077 0.923 45 H 0.009 0.991 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.044 0.956 50 H 0.112 0.888 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -32.384 -2.039 -7.826 33.379 hybrid contribution 1.379 -0.497 0.727 1.636 sum -31.005 -2.537 -7.100 31.909 Atomic orbital electron populations 1.22287 0.89460 1.07256 1.05926 1.23296 0.93877 0.86589 0.68909 1.90553 1.73514 1.35975 1.38728 1.20536 0.92551 0.96629 1.05469 1.21846 1.02078 0.89960 0.97974 1.21446 0.92771 0.99860 0.96383 1.21877 0.96644 0.96906 1.04193 1.19121 0.82727 0.94619 0.97957 1.86154 1.16629 1.33054 1.88685 1.23678 0.92787 0.83655 1.04136 1.21787 0.89580 0.94370 0.88328 0.90395 1.86682 1.83853 1.50439 1.15754 1.22698 0.87708 0.96092 1.03230 1.61725 1.05144 1.30710 1.28571 1.22033 0.96877 0.98211 0.88689 1.21407 0.92375 0.98881 1.00722 1.18662 0.93533 0.92875 0.92382 1.21611 0.95775 1.43073 0.96724 0.93143 1.25744 1.02242 0.95533 0.95196 1.70011 1.37254 1.46693 1.01811 0.85644 0.80633 0.78507 0.77401 1.20461 1.20810 1.19169 1.21547 0.94490 0.99697 0.98149 1.22073 0.94012 0.89367 1.00393 1.20694 0.94238 0.96596 1.03260 0.86563 0.87706 0.87633 0.80682 0.81170 0.82767 0.88710 0.89304 0.76752 0.87505 0.92704 0.91902 0.96172 0.95787 0.92324 0.99113 0.93141 0.92641 0.93420 0.95602 0.88766 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.17 10.19 71.24 0.73 -0.44 16 2 C 0.39 6.78 7.23 28.04 0.20 6.98 16 3 O -0.51 -13.88 17.09 -2.94 -0.05 -13.93 16 4 C -0.15 -2.57 5.87 -20.16 -0.12 -2.69 16 5 C -0.10 -0.89 9.45 22.59 0.21 -0.67 16 6 C -0.09 -0.71 10.02 22.21 0.22 -0.48 16 7 C -0.18 -2.30 9.04 22.44 0.20 -2.10 16 8 C 0.10 2.12 6.68 22.46 0.15 2.27 16 9 O -0.33 -8.09 10.10 -87.82 -0.89 -8.97 16 10 C 0.03 0.56 4.37 71.98 0.31 0.87 16 11 C 0.12 2.80 3.32 30.59 0.10 2.91 16 12 H 0.08 2.30 6.76 -2.39 -0.02 2.28 16 13 O -0.56 -15.21 13.22 -144.34 -1.91 -17.12 16 14 C 0.03 0.68 4.65 86.30 0.40 1.09 16 15 N -0.54 -17.59 4.50 -896.37 -4.03 -21.63 16 16 C 0.07 2.74 5.29 86.33 0.46 3.20 16 17 C -0.10 -4.76 5.12 30.65 0.16 -4.60 16 18 C 0.04 2.26 2.16 -11.46 -0.02 2.24 16 19 C -0.53 -30.41 8.56 25.60 0.22 -30.19 16 20 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 21 C 0.01 0.63 5.31 84.65 0.45 1.08 16 22 N -0.92 -54.40 11.37 21.44 0.24 -54.16 16 23 Si 0.95 44.95 29.54 68.60 2.03 46.98 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 27 C -0.10 -4.19 5.32 30.65 0.16 -4.03 16 28 C 0.07 2.23 5.43 86.33 0.47 2.70 16 29 C -0.13 -3.02 9.54 22.69 0.22 -2.81 16 30 H 0.12 -0.07 5.60 -2.39 -0.01 -0.08 16 31 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.18 0.05 5.92 -2.91 -0.02 0.03 16 34 H 0.17 0.13 8.06 -2.91 -0.02 0.11 16 35 H 0.15 1.24 6.27 -2.91 -0.02 1.22 16 36 H 0.09 1.05 7.64 -2.39 -0.02 1.03 16 37 H 0.09 1.17 7.67 -2.39 -0.02 1.15 16 38 H 0.38 6.91 9.05 -74.05 -0.67 6.24 16 39 H 0.11 1.69 7.79 -2.39 -0.02 1.68 16 40 H 0.05 1.11 8.00 -2.39 -0.02 1.09 16 41 H 0.06 2.36 6.68 -2.38 -0.02 2.35 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.06 3.29 6.17 -2.39 -0.01 3.27 16 45 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 46 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.05 2.19 8.14 -2.39 -0.02 2.18 16 48 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 49 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.09 2.40 7.93 -2.39 -0.02 2.38 16 51 H 0.11 3.12 7.65 -2.91 -0.02 3.10 16 Total: -1.00 -79.76 407.06 0.18 -79.58 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.27 Total: 13.93 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 4.52 Total: -24.69 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -3.79 Total: -75.78 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -2.84 Total: -40.02 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -79.76 0.18 -79.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541022513.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.634 kcal (2) G-P(sol) polarization free energy of solvation -79.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds