Wall clock time and date at job start Wed Apr 1 2020 05:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00387 * 2 1 4 4 C 1.52995 * 109.46973 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47311 * 64.99881 * 4 3 2 6 6 C 1.35897 * 116.99884 * 179.97438 * 5 4 3 7 7 C 1.38760 * 120.05838 * 359.97438 * 6 5 4 8 8 C 1.38116 * 119.94316 * 180.02562 * 7 6 5 9 9 C 1.38287 * 120.05842 * 0.03360 * 8 7 6 10 10 C 1.38236 * 120.11122 * 359.94720 * 9 8 7 11 11 C 1.50697 * 119.97367 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47266 * 89.99855 * 11 10 9 13 13 O 1.21279 * 120.00113 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99961 * 180.02562 * 12 11 10 15 15 C 1.46927 * 120.62995 * 359.72079 * 14 12 11 16 16 C 1.52758 * 109.00682 * 233.58186 * 15 14 12 17 17 C 1.53039 * 109.38439 * 305.58958 * 16 15 14 18 18 C 1.50695 * 109.44663 * 181.25425 * 17 16 15 19 19 H 1.08006 * 120.00026 * 239.94086 * 18 17 16 20 20 C 1.37879 * 120.00293 * 59.93967 * 18 17 16 21 21 N 1.31514 * 119.99937 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00047 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46839 * 90.00099 * 22 20 18 24 24 H 1.48497 * 109.47078 * 209.99681 * 22 20 18 25 25 H 1.48497 * 109.47135 * 330.00282 * 22 20 18 26 26 C 1.53041 * 109.53647 * 61.24252 * 17 16 15 27 27 C 1.46923 * 120.62964 * 179.97438 * 14 12 11 28 28 C 1.38165 * 120.05779 * 0.28175 * 10 9 8 29 29 H 1.09000 * 109.47673 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47069 * 300.00577 * 1 2 3 31 31 H 1.09000 * 109.47033 * 60.00042 * 1 2 3 32 32 H 1.09003 * 109.46771 * 59.99966 * 3 2 1 33 33 H 1.08998 * 109.46696 * 299.99843 * 3 2 1 34 34 H 1.09000 * 109.47345 * 304.99193 * 4 3 2 35 35 H 1.09004 * 109.46772 * 185.00243 * 4 3 2 36 36 H 1.07998 * 120.02368 * 0.04999 * 7 6 5 37 37 H 1.08001 * 119.96923 * 180.02562 * 8 7 6 38 38 H 1.08006 * 119.94152 * 179.97438 * 9 8 7 39 39 H 1.09004 * 109.47205 * 329.99948 * 11 10 9 40 40 H 1.08997 * 109.47395 * 210.00441 * 11 10 9 41 41 H 1.09003 * 109.58790 * 353.42296 * 15 14 12 42 42 H 1.09007 * 109.58432 * 113.84106 * 15 14 12 43 43 H 1.08998 * 109.56153 * 185.55612 * 16 15 14 44 44 H 1.08997 * 109.35812 * 65.50160 * 16 15 14 45 45 H 1.09000 * 109.45771 * 301.22193 * 17 16 15 46 46 H 0.96992 * 119.99887 * 179.97438 * 21 20 18 47 47 H 1.08996 * 109.49638 * 178.68503 * 26 17 16 48 48 H 1.08997 * 109.52468 * 58.59952 * 26 17 16 49 49 H 1.08998 * 109.59009 * 246.15627 * 27 14 12 50 50 H 1.09003 * 109.58381 * 6.44334 * 27 14 12 51 51 H 1.08004 * 120.03156 * 179.74227 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5794 -1.2220 6 6 5.3019 0.3984 -1.3841 7 6 6.1828 0.7956 -0.3882 8 6 7.5413 0.6110 -0.5557 9 6 8.0239 0.0316 -1.7149 10 6 7.1484 -0.3653 -2.7083 11 6 7.6776 -0.9969 -3.9701 12 6 7.7543 -2.4911 -3.7899 13 8 7.4124 -2.9938 -2.7405 14 7 8.2029 -3.2690 -4.7951 15 6 8.6149 -2.6753 -6.0744 16 6 7.8580 -3.3634 -7.2089 17 6 8.0733 -4.8759 -7.1191 18 6 7.3524 -5.5537 -8.2557 19 1 6.5805 -6.2802 -8.0488 20 6 7.6782 -5.2463 -9.5597 21 7 8.6178 -4.3612 -9.8116 22 14 6.7850 -6.0870 -10.9686 23 1 5.5883 -5.2905 -11.3415 24 1 7.6938 -6.1921 -12.1383 25 1 6.3627 -7.4465 -10.5459 26 6 7.5249 -5.3928 -5.7871 27 6 8.2839 -4.7271 -4.6343 28 6 5.7889 -0.1786 -2.5477 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8515 0.5681 0.8410 35 1 3.9786 2.1763 0.0890 36 1 5.8064 1.2483 0.5172 37 1 8.2273 0.9196 0.2193 38 1 9.0866 -0.1115 -1.8441 39 1 8.6723 -0.6051 -4.1830 40 1 7.0104 -0.7648 -4.8001 41 1 8.3823 -1.6104 -6.0748 42 1 9.6865 -2.8174 -6.2148 43 1 8.2276 -2.9996 -8.1675 44 1 6.7945 -3.1415 -7.1204 45 1 9.1391 -5.0954 -7.1827 46 1 8.8472 -4.1453 -10.7289 47 1 7.6575 -6.4733 -5.7338 48 1 6.4645 -5.1521 -5.7117 49 1 9.3279 -5.0396 -4.6552 50 1 7.8351 -5.0154 -3.6837 51 1 5.1055 -0.4850 -3.3259 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543832349.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:52 Heat of formation + Delta-G solvation = -101.388927 kcal Electronic energy + Delta-G solvation = -30066.796743 eV Core-core repulsion = 25931.260658 eV Total energy + Delta-G solvation = -4135.536085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.39091 -39.60305 -38.34527 -37.41228 -36.60456 -33.50615 -32.71646 -31.52248 -31.16645 -30.09780 -29.48679 -27.75705 -26.67950 -25.94763 -23.70788 -22.91591 -22.57108 -22.27619 -21.12304 -19.80266 -18.41918 -17.80351 -17.18431 -16.92067 -16.52159 -16.17400 -16.11298 -15.79305 -15.41599 -15.28392 -15.19452 -14.71458 -14.55466 -14.05334 -13.42659 -13.37295 -13.29076 -13.04197 -12.94978 -12.75737 -12.65515 -12.40872 -12.36052 -11.98883 -11.79222 -11.64597 -11.61019 -11.40743 -11.28563 -11.05870 -10.94115 -10.84654 -10.63683 -10.36777 -10.10534 -10.08582 -9.65550 -9.42199 -9.16228 -8.95636 -8.75507 -8.38066 -8.18873 -7.97000 -6.03449 -4.09231 1.29298 1.47370 2.97605 3.03505 3.28413 3.34523 3.35474 3.39131 3.46599 3.85762 4.41025 4.46946 4.66113 4.69297 4.77160 4.86281 4.88618 4.99412 5.00657 5.02192 5.04808 5.17146 5.25945 5.28816 5.32227 5.35592 5.45885 5.58446 5.60724 5.74720 5.84042 5.97179 6.01855 6.10192 6.18293 6.26367 6.31532 6.39430 6.47760 6.59893 6.67728 6.70747 6.76214 6.91956 7.05281 7.16207 7.28177 7.35895 7.66599 7.92119 7.95985 8.04128 8.40461 8.61371 8.94179 9.55868 11.02095 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.002151 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.381421 B =13012.252718 C =14453.939092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.061 3.939 5 O -0.307 6.307 6 C 0.130 3.870 7 C -0.214 4.214 8 C -0.080 4.080 9 C -0.143 4.143 10 C -0.018 4.018 11 C -0.104 4.104 12 C 0.513 3.487 13 O -0.549 6.549 14 N -0.601 5.601 15 C 0.102 3.898 16 C -0.126 4.126 17 C 0.049 3.951 18 C -0.511 4.511 19 H 0.055 0.945 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.890 3.110 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.123 4.123 27 C 0.112 3.888 28 C -0.135 4.135 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.039 0.961 45 H 0.027 0.973 46 H 0.260 0.740 47 H 0.059 0.941 48 H 0.052 0.948 49 H 0.059 0.941 50 H 0.078 0.922 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.696 15.709 18.647 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.221 6.221 6 C 0.085 3.915 7 C -0.233 4.233 8 C -0.099 4.099 9 C -0.161 4.161 10 C -0.018 4.018 11 C -0.144 4.144 12 C 0.301 3.699 13 O -0.428 6.428 14 N -0.334 5.334 15 C -0.020 4.020 16 C -0.164 4.164 17 C 0.030 3.970 18 C -0.549 4.549 19 H 0.073 0.927 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.162 4.162 27 C -0.010 4.010 28 C -0.154 4.154 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.123 0.877 44 H 0.058 0.942 45 H 0.045 0.955 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.077 0.923 50 H 0.096 0.904 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.829 15.296 18.904 25.258 hybrid contribution -0.590 -0.099 -0.749 0.959 sum -7.420 15.197 18.155 24.812 Atomic orbital electron populations 1.22770 0.80773 1.03145 0.99882 1.88001 1.19860 1.26936 1.95381 1.22574 0.91628 0.85916 1.01317 1.22805 0.93658 0.98085 0.86859 1.86129 1.20238 1.76995 1.38725 1.18881 0.82133 0.96006 0.94465 1.21139 0.94303 1.08110 0.99736 1.20823 0.94501 0.97494 0.97041 1.20876 0.99576 1.01590 0.94075 1.19112 0.92365 0.95384 0.94971 1.20738 1.03823 0.93027 0.96813 1.20320 0.77405 0.88544 0.83628 1.90673 1.49391 1.75455 1.27245 1.48248 1.63515 1.07577 1.14072 1.21974 0.99633 0.96863 0.83497 1.21954 0.97882 0.98912 0.97654 1.18632 0.96568 0.91409 0.90384 1.21213 1.20059 1.22984 0.90644 0.92715 1.24957 0.95064 0.95188 0.98779 1.69828 1.30634 1.32975 1.19701 0.86618 0.79546 0.80044 0.81941 1.20739 1.21263 1.19971 1.22013 0.99227 0.99051 0.95868 1.21687 1.00287 0.78900 1.00111 1.20239 0.94934 1.03059 0.97157 0.89362 0.94132 0.93869 0.91196 0.92037 0.91110 0.90529 0.85896 0.85938 0.86070 0.87836 0.87684 0.91410 0.91900 0.87696 0.94243 0.95458 0.92993 0.92195 0.92959 0.92297 0.90387 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.11 10.67 -40.09 -0.43 -4.53 16 3 C 0.06 0.49 6.32 37.16 0.23 0.72 16 4 C 0.06 0.54 5.12 37.16 0.19 0.73 16 5 O -0.31 -4.01 10.10 -24.27 -0.25 -4.25 16 6 C 0.13 1.76 6.69 -39.21 -0.26 1.50 16 7 C -0.21 -2.46 9.04 -39.43 -0.36 -2.82 16 8 C -0.08 -0.91 10.04 -39.61 -0.40 -1.31 16 9 C -0.14 -1.80 9.70 -39.56 -0.38 -2.19 16 10 C -0.02 -0.25 4.37 -104.65 -0.46 -0.71 16 11 C -0.10 -1.41 4.18 -29.04 -0.12 -1.53 16 12 C 0.51 9.01 7.69 -10.98 -0.08 8.92 16 13 O -0.55 -11.41 15.45 5.56 0.09 -11.32 16 14 N -0.60 -10.79 2.98 -173.00 -0.52 -11.30 16 15 C 0.10 1.78 6.31 -3.93 -0.02 1.75 16 16 C -0.13 -2.72 5.14 -26.84 -0.14 -2.86 16 17 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 18 C -0.51 -13.60 8.56 -34.44 -0.29 -13.89 16 19 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 20 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 21 N -0.89 -24.28 11.30 55.43 0.63 -23.65 16 22 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 C -0.12 -2.56 5.30 -26.59 -0.14 -2.70 16 27 C 0.11 2.09 6.44 -3.69 -0.02 2.07 16 28 C -0.14 -1.97 9.64 -39.43 -0.38 -2.35 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.62 7.66 -51.93 -0.40 0.22 16 35 H 0.08 0.48 7.66 -51.93 -0.40 0.09 16 36 H 0.12 1.07 6.30 -52.49 -0.33 0.74 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.10 1.15 7.90 -51.93 -0.41 0.74 16 40 H 0.10 1.30 7.62 -51.93 -0.40 0.91 16 41 H 0.07 0.97 5.94 -51.93 -0.31 0.66 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.11 2.52 6.03 -51.93 -0.31 2.21 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 47 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 51 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 410.16 15.07 6.18 6.18 Total: -1.00 -32.45 410.16 -9.50 -41.95 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.38 Total: 1.92 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -1.81 Total: -10.83 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.11 Total: -34.95 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.59 Total: -20.11 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.45 -9.50 -41.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543832349.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.437 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds