Wall clock time and date at job start Wed Apr 1 2020 05:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 114.00017 * 2 1 4 4 C 1.52998 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.54380 * 302.59219 * 4 3 2 6 6 C 1.34768 * 120.00102 * 303.20693 * 5 4 3 7 7 O 1.21275 * 120.00572 * 354.85932 * 6 5 4 8 8 C 1.50706 * 120.00041 * 174.85192 * 6 5 4 9 9 C 1.52998 * 109.47468 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.46846 * 54.99972 * 9 8 6 11 11 C 1.50708 * 109.46916 * 295.00634 * 9 8 6 12 12 H 1.08001 * 119.99918 * 120.57405 * 11 9 8 13 13 C 1.37880 * 119.99865 * 300.56895 * 11 9 8 14 14 N 1.31508 * 119.99875 * 3.74237 * 13 11 9 15 15 Si 1.86799 * 119.99786 * 183.74143 * 13 11 9 16 16 H 1.48501 * 109.47165 * 60.00028 * 15 13 11 17 17 H 1.48503 * 109.46938 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47212 * 300.00043 * 15 13 11 19 19 C 1.50694 * 109.47478 * 175.00539 * 9 8 6 20 20 C 1.38234 * 120.00476 * 208.48033 * 19 9 8 21 21 C 1.38230 * 120.00306 * 179.78425 * 20 19 9 22 22 C 1.38237 * 120.00160 * 0.44122 * 21 20 19 23 23 C 1.38239 * 119.99554 * 359.81194 * 22 21 20 24 24 C 1.38229 * 119.99972 * 359.97438 * 23 22 21 25 25 C 1.53171 * 109.54565 * 62.77463 * 4 3 2 26 26 C 1.53287 * 109.06574 * 176.85089 * 25 4 3 27 27 O 1.42907 * 109.45761 * 302.44810 * 26 25 4 28 28 C 1.42896 * 114.10204 * 61.15466 * 27 26 25 29 29 C 1.53099 * 109.41699 * 298.84287 * 28 27 26 30 30 H 1.09000 * 109.46694 * 59.99896 * 1 2 3 31 31 H 1.09004 * 109.46787 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47119 * 299.99812 * 1 2 3 33 33 H 1.08999 * 109.46545 * 59.99970 * 3 2 1 34 34 H 1.09005 * 109.46876 * 300.00322 * 3 2 1 35 35 H 0.96998 * 119.99553 * 123.20462 * 5 4 3 36 36 H 1.08998 * 109.47375 * 300.00674 * 8 6 5 37 37 H 1.09005 * 109.46502 * 60.00118 * 8 6 5 38 38 H 0.96999 * 120.00357 * 179.97438 * 14 13 11 39 39 H 1.08007 * 119.99363 * 359.97438 * 20 19 9 40 40 H 1.07996 * 119.99900 * 180.27154 * 21 20 19 41 41 H 1.07994 * 119.99974 * 179.82958 * 22 21 20 42 42 H 1.08002 * 119.99635 * 179.97438 * 23 22 21 43 43 H 1.08007 * 119.99701 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.52220 * 296.83679 * 25 4 3 45 45 H 1.09004 * 109.52521 * 57.02651 * 25 4 3 46 46 H 1.08997 * 109.45956 * 182.45196 * 26 25 4 47 47 H 1.08996 * 109.46430 * 62.44452 * 26 25 4 48 48 H 1.08998 * 109.48445 * 178.85839 * 28 27 26 49 49 H 1.09005 * 109.48932 * 58.82683 * 28 27 26 50 50 H 1.08999 * 109.52217 * 297.70093 * 29 28 27 51 51 H 1.08995 * 109.57215 * 177.54178 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9658 0.4044 1.1623 6 6 3.6194 0.7983 2.4037 7 8 3.0320 1.8469 2.5655 8 6 3.9617 -0.0644 3.5910 9 6 3.4598 0.6068 4.8709 10 1 2.3939 0.8151 4.7779 11 6 4.2068 1.8978 5.0873 12 1 3.6673 2.8320 5.1370 13 6 5.5789 1.8860 5.2219 14 7 6.2431 0.7588 5.0881 15 14 6.4945 3.4711 5.5941 16 1 6.0124 4.0303 6.8826 17 1 7.9499 3.1915 5.6888 18 1 6.2491 4.4517 4.5063 19 6 3.6920 -0.3105 6.0437 20 6 2.8599 -0.2478 7.1457 21 6 3.0703 -1.0924 8.2196 22 6 4.1183 -1.9936 8.1953 23 6 4.9536 -2.0527 7.0954 24 6 4.7405 -1.2111 6.0198 25 6 3.9936 0.4861 -1.2845 26 6 5.5256 0.4413 -1.3108 27 8 6.0424 1.7706 -1.2199 28 6 5.6838 2.4552 -0.0180 29 6 4.1601 2.5820 0.0603 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 4.4999 -0.3957 1.0386 36 1 3.4857 -1.0388 3.4814 37 1 5.0428 -0.1924 3.6473 38 1 7.2084 0.7505 5.1824 39 1 2.0435 0.4590 7.1664 40 1 2.4175 -1.0464 9.0787 41 1 4.2842 -2.6515 9.0355 42 1 5.7726 -2.7564 7.0766 43 1 5.3934 -1.2570 5.1606 44 1 3.5970 -0.5289 -1.3083 45 1 3.6309 1.0404 -2.1502 46 1 5.8596 -0.0156 -2.2423 47 1 5.8863 -0.1473 -0.4673 48 1 6.1318 3.4488 -0.0181 49 1 6.0464 1.8930 0.8427 50 1 3.8007 3.1786 -0.7781 51 1 3.8816 3.0650 0.9969 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562277658.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:02 Heat of formation + Delta-G solvation = -99.605830 kcal Electronic energy + Delta-G solvation = -32825.170551 eV Core-core repulsion = 28689.711787 eV Total energy + Delta-G solvation = -4135.458764 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.37628 -38.50864 -37.81342 -37.37154 -34.87758 -34.02977 -31.51296 -31.03083 -30.93396 -29.80421 -28.35265 -27.98513 -25.95895 -25.62215 -23.60217 -22.87367 -22.40426 -21.47592 -20.51712 -19.30925 -18.81888 -16.91062 -16.39474 -16.20287 -15.96539 -15.92870 -15.69618 -15.25869 -15.17976 -14.88991 -14.74734 -14.03224 -13.95956 -13.85229 -13.69484 -13.25112 -12.92394 -12.76703 -12.44680 -12.35059 -12.21254 -12.01175 -11.86425 -11.63744 -11.47908 -11.36499 -11.27174 -11.19576 -10.89935 -10.81003 -10.55325 -10.40477 -10.27505 -10.16928 -9.92998 -9.55493 -9.47010 -9.30057 -9.15060 -8.59156 -8.45202 -8.29666 -7.79312 -7.43374 -5.97657 -4.06801 2.50041 2.58798 3.32040 3.35477 3.40717 3.68335 3.72978 3.90638 4.04571 4.43022 4.69137 4.86860 4.98195 5.03573 5.14821 5.25405 5.26027 5.31669 5.42769 5.50251 5.53538 5.65522 5.69017 5.75657 5.76977 5.81596 5.89622 5.92292 5.99948 6.04670 6.07834 6.13375 6.23850 6.36761 6.43104 6.49564 6.62573 6.73293 6.78782 7.09869 7.15352 7.17731 7.27055 7.28664 7.31051 7.49211 7.55036 7.70125 7.94551 8.09519 8.18997 8.30638 8.37174 8.90450 9.25322 9.56559 10.96766 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.004219 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.318652 B = 6635.633349 C = 7961.603254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.051 3.949 4 C 0.189 3.811 5 N -0.733 5.733 6 C 0.534 3.466 7 O -0.529 6.529 8 C -0.138 4.138 9 C 0.091 3.909 10 H 0.035 0.965 11 C -0.470 4.470 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.889 5.889 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.279 1.279 19 C -0.028 4.028 20 C -0.131 4.131 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.144 4.144 24 C -0.068 4.068 25 C -0.153 4.153 26 C 0.061 3.939 27 O -0.387 6.387 28 C 0.066 3.934 29 C -0.165 4.165 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.393 0.607 36 H 0.051 0.949 37 H 0.130 0.870 38 H 0.261 0.739 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.141 0.859 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.052 0.948 48 H 0.091 0.909 49 H 0.060 0.940 50 H 0.069 0.931 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.462 -4.367 -10.680 12.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C -0.027 4.027 4 C 0.102 3.898 5 N -0.387 5.387 6 C 0.323 3.677 7 O -0.404 6.404 8 C -0.178 4.178 9 C 0.072 3.928 10 H 0.053 0.947 11 C -0.507 4.507 12 H 0.077 0.923 13 C -0.138 4.138 14 N -0.529 5.529 15 Si 0.717 3.283 16 H -0.205 1.205 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.029 4.029 20 C -0.149 4.149 21 C -0.161 4.161 22 C -0.172 4.172 23 C -0.163 4.163 24 C -0.087 4.087 25 C -0.191 4.191 26 C -0.016 4.016 27 O -0.306 6.306 28 C -0.011 4.011 29 C -0.203 4.203 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.227 0.773 36 H 0.069 0.931 37 H 0.148 0.852 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.159 0.841 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.110 0.890 47 H 0.070 0.930 48 H 0.109 0.891 49 H 0.078 0.922 50 H 0.088 0.912 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.491 -3.722 -10.678 12.167 hybrid contribution 0.514 0.675 0.565 1.019 sum -3.977 -3.047 -10.113 11.286 Atomic orbital electron populations 1.22677 0.81634 1.02266 0.99708 1.87838 1.19060 1.27831 1.95409 1.22997 0.93262 0.85028 1.01389 1.20110 0.91642 0.91847 0.86211 1.46168 1.57499 1.29742 1.05321 1.21017 0.76822 0.86589 0.83248 1.90518 1.40981 1.23742 1.85174 1.21939 1.06848 0.95753 0.93245 1.17595 0.95645 0.92551 0.87057 0.94656 1.20935 0.91205 0.92086 1.46487 0.92336 1.24859 0.97543 0.95995 0.95409 1.69619 1.07646 1.24855 1.50757 0.86695 0.78470 0.84194 0.78955 1.20459 1.21434 1.20425 1.20333 0.93139 0.92686 0.96737 1.20898 1.00470 0.99198 0.94315 1.20793 0.98864 0.98254 0.98225 1.20767 0.97478 1.00626 0.98294 1.21055 0.99384 1.00591 0.95247 1.21412 0.95666 0.92578 0.99042 1.22436 0.97017 1.02515 0.97114 1.22583 0.92542 0.84632 1.01888 1.87883 1.74533 1.27091 1.41048 1.22524 0.94048 0.97384 0.87130 1.22552 0.96510 0.96500 1.04763 0.94681 0.89979 0.94072 0.90416 0.93664 0.77290 0.93094 0.85245 0.92888 0.87713 0.88134 0.88331 0.88115 0.84119 0.89620 0.90261 0.89046 0.92970 0.89076 0.92150 0.91200 0.87800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.55 10.03 -35.23 -0.35 -5.90 16 3 C 0.05 0.74 4.53 37.16 0.17 0.91 16 4 C 0.19 2.70 0.44 -131.63 -0.06 2.64 16 5 N -0.73 -11.68 4.07 -47.44 -0.19 -11.88 16 6 C 0.53 10.65 6.99 -10.99 -0.08 10.57 16 7 O -0.53 -11.96 11.25 5.56 0.06 -11.90 16 8 C -0.14 -2.88 4.13 -27.88 -0.12 -2.99 16 9 C 0.09 2.13 1.97 -92.92 -0.18 1.95 16 10 H 0.04 0.85 7.91 -51.93 -0.41 0.44 16 11 C -0.47 -12.23 7.27 -34.44 -0.25 -12.48 16 12 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 13 C 0.06 1.58 5.14 -17.82 -0.09 1.49 16 14 N -0.89 -22.15 7.91 55.43 0.44 -21.71 16 15 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C -0.03 -0.64 4.64 -104.63 -0.49 -1.13 16 20 C -0.13 -2.78 9.71 -39.59 -0.38 -3.17 16 21 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 22 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 23 C -0.14 -2.86 10.05 -39.58 -0.40 -3.26 16 24 C -0.07 -1.49 7.41 -39.58 -0.29 -1.78 16 25 C -0.15 -1.78 4.83 -26.49 -0.13 -1.91 16 26 C 0.06 0.71 6.67 37.31 0.25 0.96 16 27 O -0.39 -5.53 10.77 -35.23 -0.38 -5.91 16 28 C 0.07 0.99 6.68 37.21 0.25 1.24 16 29 C -0.16 -2.48 4.80 -26.59 -0.13 -2.61 16 30 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 1.35 6.21 -51.93 -0.32 1.03 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.39 5.58 7.43 -40.82 -0.30 5.28 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.13 2.87 4.76 -51.93 -0.25 2.62 16 38 H 0.26 6.43 8.31 -40.82 -0.34 6.10 16 39 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 40 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.14 3.13 5.14 -52.48 -0.27 2.86 16 44 H 0.09 0.95 7.86 -51.93 -0.41 0.55 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.05 0.61 7.03 -51.93 -0.37 0.24 16 48 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 49 H 0.06 1.02 7.75 -51.93 -0.40 0.62 16 50 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.10 1.88 6.19 -51.93 -0.32 1.56 16 LS Contribution 393.18 15.07 5.93 5.93 Total: -1.00 -28.33 393.18 -9.22 -37.55 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -8.09 Total: 12.28 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -1.61 Total: -14.51 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.25 Total: -33.59 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.67 Total: -23.71 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.33 -9.22 -37.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562277658.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.053 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds