Wall clock time and date at job start Wed Apr 1 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00456 * 2 1 4 4 C 1.38751 * 120.05282 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.94429 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05570 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.10805 * 0.25079 * 6 5 4 8 8 C 1.50700 * 119.96903 * 179.70372 * 7 6 5 9 9 C 1.53000 * 109.47248 * 90.00108 * 8 7 6 10 10 H 1.09000 * 109.47156 * 304.04356 * 9 8 7 11 11 O 1.42903 * 109.47010 * 64.03811 * 9 8 7 12 12 C 1.50700 * 109.47568 * 184.03965 * 9 8 7 13 13 O 1.21269 * 120.00286 * 250.13645 * 12 9 8 14 14 N 1.34781 * 119.99455 * 70.13195 * 12 9 8 15 15 C 1.46922 * 120.63290 * 4.78044 * 14 12 9 16 16 C 1.52762 * 109.00656 * 233.58197 * 15 14 12 17 17 C 1.53043 * 109.38399 * 305.58598 * 16 15 14 18 18 C 1.53001 * 109.44866 * 181.25036 * 17 16 15 19 19 C 1.50703 * 109.46572 * 64.94534 * 18 17 16 20 20 H 1.07998 * 120.00362 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99598 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00285 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99659 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47505 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47113 * 120.00117 * 23 21 19 26 26 H 1.48498 * 109.47315 * 239.99716 * 23 21 19 27 27 C 1.53046 * 109.53397 * 61.24181 * 17 16 15 28 28 C 1.46930 * 120.62548 * 185.05635 * 14 12 9 29 29 C 1.38168 * 120.05714 * 359.44857 * 7 6 5 30 30 H 1.09002 * 109.46554 * 299.99725 * 1 2 3 31 31 H 1.08998 * 109.46814 * 59.99315 * 1 2 3 32 32 H 1.08993 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.07998 * 120.02796 * 0.03867 * 4 3 2 34 34 H 1.07997 * 119.97325 * 179.97438 * 5 4 3 35 35 H 1.07991 * 119.94448 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47103 * 210.00138 * 8 7 6 37 37 H 1.09000 * 109.47171 * 330.00538 * 8 7 6 38 38 H 0.96696 * 113.99719 * 60.00221 * 11 9 8 39 39 H 1.09001 * 109.58687 * 353.41442 * 15 14 12 40 40 H 1.09002 * 109.58690 * 113.84177 * 15 14 12 41 41 H 1.09005 * 109.56156 * 185.55354 * 16 15 14 42 42 H 1.09000 * 109.36018 * 65.50182 * 16 15 14 43 43 H 1.09000 * 109.46033 * 301.22410 * 17 16 15 44 44 H 1.08996 * 109.47081 * 184.93553 * 18 17 16 45 45 H 1.08992 * 109.47547 * 304.94429 * 18 17 16 46 46 H 0.96997 * 120.00398 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.49233 * 178.68087 * 27 17 16 48 48 H 1.08995 * 109.49729 * 58.58851 * 27 17 16 49 49 H 1.09002 * 109.58677 * 246.15468 * 28 14 12 50 50 H 1.08998 * 109.58964 * 6.44431 * 28 14 12 51 51 H 1.08004 * 120.02778 * 180.24912 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9211 3.6047 0.0000 6 6 3.3021 3.6757 -0.0016 7 6 4.0561 2.5170 -0.0079 8 6 5.5609 2.5980 -0.0164 9 6 6.0784 2.6229 1.4232 10 1 5.6150 3.4496 1.9616 11 8 5.7505 1.3908 2.0686 12 6 7.5745 2.8037 1.4162 13 8 8.2976 1.8872 1.7445 14 7 8.1088 3.9841 1.0449 15 6 7.2463 5.1351 0.7451 16 6 7.5973 5.6720 -0.6413 17 6 9.0959 5.9760 -0.7039 18 6 9.4436 6.5432 -2.0817 19 6 8.7576 7.8725 -2.2652 20 1 8.1356 8.2724 -1.4782 21 6 8.9242 8.5780 -3.4381 22 7 9.6820 8.0912 -4.3964 23 14 8.0733 10.2252 -3.6660 24 1 7.2849 10.5477 -2.4496 25 1 9.0925 11.2821 -3.8893 26 1 7.1668 10.1560 -4.8401 27 6 9.8895 4.6889 -0.4673 28 6 9.5648 4.1424 0.9265 29 6 3.4312 1.2847 -0.0011 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2130 2.3203 0.0016 34 1 1.3342 4.5113 0.0000 35 1 3.7924 4.6379 -0.0024 36 1 5.9686 1.7297 -0.5341 37 1 5.8729 3.5072 -0.5304 38 1 6.1303 0.6104 1.6424 39 1 6.2020 4.8231 0.7610 40 1 7.4078 5.9161 1.4881 41 1 7.0327 6.5845 -0.8330 42 1 7.3461 4.9236 -1.3929 43 1 9.3507 6.7061 0.0644 44 1 10.5225 6.6778 -2.1575 45 1 9.1084 5.8516 -2.8545 46 1 9.7995 8.5877 -5.2213 47 1 10.9564 4.9017 -0.5352 48 1 9.6168 3.9498 -1.2206 49 1 9.9192 4.8409 1.6845 50 1 10.0499 3.1762 1.0645 51 1 4.0207 0.3797 -0.0020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568513613.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:04 Heat of formation + Delta-G solvation = -115.481925 kcal Electronic energy + Delta-G solvation = -31027.701479 eV Core-core repulsion = 26891.554276 eV Total energy + Delta-G solvation = -4136.147203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.71352 -40.14615 -38.16468 -37.59770 -36.31736 -34.19760 -32.94618 -32.14923 -31.12180 -30.63742 -29.04779 -27.99980 -27.52781 -25.28552 -24.04902 -22.94044 -22.72393 -21.80541 -21.20756 -20.10621 -18.88029 -18.14597 -17.52810 -16.81104 -16.47027 -16.33050 -16.13953 -16.00959 -15.65850 -15.12163 -14.86106 -14.58747 -14.27043 -14.04747 -13.91891 -13.70112 -13.49136 -13.34695 -13.01324 -12.85255 -12.81066 -12.32341 -12.28219 -12.04741 -11.89967 -11.84156 -11.63119 -11.39469 -11.25368 -11.06242 -11.05317 -10.90766 -10.79898 -10.76645 -10.49395 -10.17284 -9.78385 -9.54071 -9.31770 -9.01914 -8.95279 -8.45609 -8.40152 -8.38086 -6.04770 -4.07048 1.09888 1.27911 2.52890 2.98444 3.02997 3.26355 3.34816 3.36892 3.56264 4.10755 4.33101 4.40798 4.55003 4.62615 4.71129 4.77587 4.82440 4.84466 4.91003 4.99960 5.13137 5.17360 5.23392 5.29552 5.31081 5.34824 5.39273 5.44449 5.52845 5.60748 5.64109 5.70156 5.85203 5.92211 6.00090 6.09601 6.24683 6.28372 6.31168 6.40844 6.44320 6.54944 6.57707 6.87924 6.91250 7.03773 7.16849 7.31934 7.49296 7.61802 7.75464 7.94632 8.12287 8.36524 8.99721 9.57185 11.06444 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.002789 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.299067 B =10038.254042 C =12208.353448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.125 3.875 4 C -0.212 4.212 5 C -0.078 4.078 6 C -0.151 4.151 7 C -0.035 4.035 8 C -0.116 4.116 9 C 0.101 3.899 10 H 0.123 0.877 11 O -0.534 6.534 12 C 0.486 3.514 13 O -0.544 6.544 14 N -0.600 5.600 15 C 0.096 3.904 16 C -0.120 4.120 17 C -0.081 4.081 18 C 0.027 3.973 19 C -0.516 4.516 20 H 0.056 0.944 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.888 3.112 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.129 4.129 28 C 0.111 3.889 29 C -0.134 4.134 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.381 0.619 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.016 0.984 45 H 0.015 0.985 46 H 0.260 0.740 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.084 0.916 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.854 -12.548 10.249 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.231 4.231 5 C -0.097 4.097 6 C -0.169 4.169 7 C -0.035 4.035 8 C -0.154 4.154 9 C 0.038 3.962 10 H 0.140 0.860 11 O -0.339 6.339 12 C 0.273 3.727 13 O -0.422 6.422 14 N -0.334 5.334 15 C -0.026 4.026 16 C -0.158 4.158 17 C -0.099 4.099 18 C -0.010 4.010 19 C -0.555 4.555 20 H 0.075 0.925 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.716 3.284 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.167 4.167 28 C -0.011 4.011 29 C -0.152 4.152 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.230 0.770 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.103 0.897 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.655 -12.805 10.660 22.862 hybrid contribution -0.404 0.939 -0.759 1.274 sum -16.059 -11.866 9.901 22.287 Atomic orbital electron populations 1.23036 0.78516 1.03839 1.01303 1.86069 1.21274 1.27059 1.88821 1.18981 0.92283 0.84100 0.96652 1.21215 0.99890 0.92504 1.09460 1.20910 0.94554 0.96981 0.97206 1.21023 0.93860 0.98130 1.03920 1.19364 0.94467 0.92429 0.97223 1.21409 0.92030 1.05651 0.96298 1.21802 0.90657 0.89747 0.93971 0.85983 1.86605 1.75368 1.15187 1.56702 1.21474 0.91584 0.82478 0.77121 1.90677 1.62253 1.40955 1.48303 1.48213 1.07930 1.11024 1.66204 1.22018 0.93597 0.87845 0.99179 1.21861 0.98683 1.01633 0.93651 1.21193 0.92837 0.94447 1.01453 1.19125 0.96791 0.95407 0.89627 1.21257 1.29226 1.04191 1.00784 0.92539 1.25024 0.95406 0.97842 0.96189 1.69965 1.38644 1.38497 1.06274 0.86603 0.79459 0.84257 0.78072 1.19738 1.21102 1.21088 1.22033 1.00917 0.98713 0.95070 1.21700 0.79407 1.01884 0.98131 1.20231 0.91183 0.98138 1.05681 0.92698 0.92702 0.88329 0.85710 0.85665 0.85482 0.89619 0.88051 0.77011 0.90330 0.91131 0.89432 0.92147 0.92255 0.96577 0.96626 0.93067 0.91031 0.92062 0.91716 0.89719 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.28 10.50 -19.42 -0.20 -3.49 16 3 C 0.12 1.36 6.69 -39.22 -0.26 1.10 16 4 C -0.21 -2.02 9.04 -39.43 -0.36 -2.38 16 5 C -0.08 -0.74 10.04 -39.60 -0.40 -1.13 16 6 C -0.15 -1.51 9.70 -39.56 -0.38 -1.90 16 7 C -0.03 -0.37 4.96 -104.65 -0.52 -0.88 16 8 C -0.12 -1.19 4.63 -27.88 -0.13 -1.32 16 9 C 0.10 1.14 2.52 -27.88 -0.07 1.07 16 10 H 0.12 1.26 7.17 -51.93 -0.37 0.89 16 11 O -0.53 -6.43 12.47 -54.93 -0.69 -7.11 16 12 C 0.49 6.81 7.03 -10.98 -0.08 6.73 16 13 O -0.54 -9.33 15.74 -14.14 -0.22 -9.56 16 14 N -0.60 -8.13 2.98 -173.03 -0.52 -8.64 16 15 C 0.10 1.17 5.48 -3.93 -0.02 1.15 16 16 C -0.12 -1.86 5.05 -26.83 -0.14 -2.00 16 17 C -0.08 -1.46 2.10 -90.57 -0.19 -1.65 16 18 C 0.03 0.65 4.45 -27.88 -0.12 0.53 16 19 C -0.52 -13.47 8.39 -34.44 -0.29 -13.76 16 20 H 0.06 1.41 7.05 -52.49 -0.37 1.04 16 21 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 22 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 23 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C -0.13 -2.05 5.36 -26.61 -0.14 -2.19 16 28 C 0.11 1.58 6.42 -3.71 -0.02 1.55 16 29 C -0.13 -1.48 9.30 -39.43 -0.37 -1.84 16 30 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 32 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.10 1.05 5.44 -51.93 -0.28 0.77 16 38 H 0.38 3.81 8.73 45.56 0.40 4.21 16 39 H 0.08 0.77 4.65 -51.93 -0.24 0.53 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.45 6.91 -51.93 -0.36 1.09 16 42 H 0.06 0.96 7.56 -51.93 -0.39 0.56 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.08 1.25 7.04 -51.93 -0.37 0.89 16 51 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 404.12 15.07 6.09 6.09 Total: -1.00 -32.69 404.12 -9.73 -42.43 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.32 Total: 4.14 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -2.59 Total: -14.31 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.22 Total: -33.90 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -1.11 Total: -20.16 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.69 -9.73 -42.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568513613.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.057 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds