Wall clock time and date at job start Wed Apr 1 2020 05:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00084 * 2 1 4 4 C 1.53006 * 109.46881 * 179.97438 * 3 2 1 5 5 O 1.42895 * 109.47036 * 65.00230 * 4 3 2 6 6 C 1.35901 * 117.00221 * 180.02562 * 5 4 3 7 7 C 1.38735 * 120.04979 * 359.72020 * 6 5 4 8 8 C 1.38148 * 119.93988 * 179.74340 * 7 6 5 9 9 C 1.38264 * 120.05958 * 0.51617 * 8 7 6 10 10 C 1.50691 * 119.94786 * 179.74339 * 9 8 7 11 11 C 1.50700 * 109.47167 * 270.01453 * 10 9 8 12 12 O 1.21277 * 119.99918 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00090 * 180.02562 * 11 10 9 14 14 C 1.46927 * 120.63111 * 359.71820 * 13 11 10 15 15 C 1.53625 * 108.53723 * 126.36869 * 14 13 11 16 16 C 1.53041 * 109.24072 * 54.86266 * 15 14 13 17 17 C 1.53033 * 109.53786 * 298.50377 * 16 15 14 18 18 H 1.09001 * 109.50046 * 301.41870 * 17 16 15 19 19 C 1.50694 * 109.52743 * 181.33195 * 17 16 15 20 20 H 1.08007 * 120.00262 * 0.14986 * 19 17 16 21 21 C 1.37879 * 120.00453 * 180.14532 * 19 17 16 22 22 N 1.31509 * 119.99775 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 120.00067 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47421 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47219 * 120.00405 * 23 21 19 26 26 H 1.48505 * 109.46796 * 240.00079 * 23 21 19 27 27 C 1.46923 * 120.62984 * 180.02562 * 13 11 10 28 28 C 1.38272 * 120.10863 * 359.76066 * 9 8 7 29 29 C 1.38145 * 120.05490 * 359.97438 * 28 9 8 30 30 H 1.08997 * 109.46649 * 300.00180 * 1 2 3 31 31 H 1.08996 * 109.47076 * 59.99959 * 1 2 3 32 32 H 1.09004 * 109.47120 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47198 * 60.00172 * 3 2 1 34 34 H 1.08997 * 109.46749 * 299.99934 * 3 2 1 35 35 H 1.09001 * 109.47002 * 184.99708 * 4 3 2 36 36 H 1.08993 * 109.46955 * 305.00145 * 4 3 2 37 37 H 1.07999 * 120.03086 * 359.97438 * 7 6 5 38 38 H 1.08002 * 119.97208 * 180.27460 * 8 7 6 39 39 H 1.08998 * 109.47627 * 30.01818 * 10 9 8 40 40 H 1.09005 * 109.47589 * 150.01993 * 10 9 8 41 41 H 1.08992 * 109.59054 * 246.20498 * 14 13 11 42 42 H 1.09004 * 109.58436 * 6.63482 * 14 13 11 43 43 H 1.09000 * 109.63789 * 294.86902 * 15 14 13 44 44 H 1.09006 * 109.45503 * 174.74246 * 15 14 13 45 45 H 1.09003 * 109.46005 * 178.48731 * 16 15 14 46 46 H 1.08995 * 109.45099 * 58.52049 * 16 15 14 47 47 H 0.97000 * 120.00147 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.58591 * 353.36925 * 27 13 11 49 49 H 1.09004 * 109.58827 * 113.79711 * 27 13 11 50 50 H 1.07997 * 119.97073 * 180.02562 * 28 9 8 51 51 H 1.08001 * 120.02762 * 179.97438 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 8 3.9659 0.5791 -1.2201 6 6 5.3030 0.3971 -1.3807 7 6 6.1832 0.7984 -0.3863 8 6 7.5416 0.6075 -0.5496 9 6 8.0251 0.0267 -1.7075 10 6 9.5077 -0.1751 -1.8856 11 6 10.1046 1.0412 -2.5455 12 8 9.3958 1.9797 -2.8416 13 7 11.4261 1.0860 -2.8066 14 6 12.2986 -0.0405 -2.4482 15 6 13.0777 -0.4722 -3.6999 16 6 13.8180 0.7373 -4.2753 17 6 12.8058 1.8096 -4.6847 18 1 12.1161 1.3968 -5.4209 19 6 13.5328 2.9870 -5.2813 20 1 14.6097 2.9718 -5.3633 21 6 12.8235 4.0838 -5.7228 22 7 11.5123 4.1026 -5.6227 23 14 13.7248 5.5430 -6.4631 24 1 15.1853 5.2748 -6.4625 25 1 13.2615 5.7553 -7.8579 26 1 13.4438 6.7587 -5.6577 27 6 12.0226 2.2651 -3.4489 28 6 7.1503 -0.3688 -2.7026 29 6 5.7906 -0.1851 -2.5417 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6887 1.8463 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.9786 2.1764 0.0902 36 1 3.8508 0.5684 0.8426 37 1 5.8065 1.2563 0.5164 38 1 8.2270 0.9156 0.2261 39 1 9.9736 -0.3255 -0.9117 40 1 9.6829 -1.0504 -2.5111 41 1 12.9954 0.2702 -1.6698 42 1 11.6926 -0.8720 -2.0885 43 1 12.3855 -0.8636 -4.4454 44 1 13.7977 -1.2451 -3.4307 45 1 14.3936 0.4293 -5.1482 46 1 14.4918 1.1432 -3.5208 47 1 11.0132 4.8744 -5.9330 48 1 11.2344 2.9554 -3.7496 49 1 12.6975 2.7597 -2.7502 50 1 7.5303 -0.8226 -3.6060 51 1 5.1077 -0.4939 -3.3194 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904277.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:04 Heat of formation + Delta-G solvation = -121.904465 kcal Electronic energy + Delta-G solvation = -30075.593290 eV Core-core repulsion = 25939.167585 eV Total energy + Delta-G solvation = -4136.425705 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.35641 -40.75438 -39.14845 -38.44108 -37.84740 -35.29541 -33.61220 -33.09817 -32.06930 -31.54405 -31.19107 -28.33636 -27.25495 -26.86144 -25.68551 -24.66109 -23.43630 -23.08417 -22.31486 -21.22697 -19.64929 -19.28838 -18.51850 -17.83452 -17.80495 -17.31412 -16.91482 -16.61368 -16.54386 -16.16178 -16.14908 -15.91421 -15.54012 -15.17866 -15.13215 -14.83169 -14.50664 -14.39197 -14.21276 -14.17489 -13.78213 -13.59192 -13.42668 -13.14009 -12.92675 -12.81137 -12.73226 -12.56753 -12.44654 -12.28150 -12.25197 -12.18716 -11.78987 -11.74397 -11.68598 -11.60071 -11.07193 -10.92427 -10.69033 -10.58549 -10.47732 -9.91775 -9.32385 -9.02077 -8.11188 -6.28331 0.42306 0.44895 1.38082 1.39525 1.51672 1.85588 2.21044 2.30496 2.42212 2.77644 2.86235 3.17223 3.75866 3.79681 3.92812 3.96844 3.98813 4.08523 4.17298 4.22192 4.28919 4.34655 4.37942 4.40353 4.43856 4.50994 4.53870 4.57884 4.63922 4.65366 4.73470 4.78555 4.82529 4.85310 4.86754 4.93414 5.10710 5.13877 5.28239 5.30343 5.33518 5.38366 5.41112 5.56592 5.68169 5.70588 5.83503 5.92750 6.03055 6.16243 6.34612 6.47191 6.78654 6.85543 7.41023 7.47599 8.91938 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015729 B = 0.002033 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.751049 B =13768.312314 C =15023.187486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.061 3.939 4 C 0.051 3.949 5 O -0.327 6.327 6 C 0.115 3.885 7 C -0.211 4.211 8 C -0.074 4.074 9 C -0.112 4.112 10 C -0.084 4.084 11 C 0.496 3.504 12 O -0.591 6.591 13 N -0.614 5.614 14 C 0.102 3.898 15 C -0.128 4.128 16 C -0.106 4.106 17 C 0.037 3.963 18 H -0.015 1.015 19 C -0.535 4.535 20 H 0.061 0.939 21 C 0.007 3.993 22 N -0.915 5.915 23 Si 0.957 3.043 24 H -0.259 1.259 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.126 3.874 28 C -0.077 4.077 29 C -0.167 4.167 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.117 0.883 43 H 0.051 0.949 44 H 0.104 0.896 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.258 0.742 48 H 0.073 0.927 49 H 0.032 0.968 50 H 0.133 0.867 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.992 -12.506 16.196 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.015 4.015 4 C -0.023 4.023 5 O -0.241 6.241 6 C 0.070 3.930 7 C -0.229 4.229 8 C -0.092 4.092 9 C -0.113 4.113 10 C -0.123 4.123 11 C 0.286 3.714 12 O -0.471 6.471 13 N -0.346 5.346 14 C -0.020 4.020 15 C -0.165 4.165 16 C -0.144 4.144 17 C 0.018 3.982 18 H 0.003 0.997 19 C -0.573 4.573 20 H 0.079 0.921 21 C -0.192 4.192 22 N -0.554 5.554 23 Si 0.782 3.218 24 H -0.183 1.183 25 H -0.209 1.209 26 H -0.209 1.209 27 C 0.004 3.996 28 C -0.095 4.095 29 C -0.186 4.186 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.142 0.858 41 H 0.098 0.902 42 H 0.135 0.865 43 H 0.070 0.930 44 H 0.122 0.878 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.050 0.950 50 H 0.151 0.849 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.551 -12.127 15.885 24.721 hybrid contribution 0.117 1.690 -0.856 1.898 sum -14.434 -10.437 15.029 23.306 Atomic orbital electron populations 1.22928 0.79312 1.03807 1.01017 1.87918 1.21652 1.28394 1.95663 1.22717 0.90658 0.85337 1.02772 1.23127 0.94623 0.98976 0.85622 1.86083 1.19885 1.77382 1.40776 1.19127 0.82722 0.96244 0.94951 1.21399 0.93880 1.07000 1.00640 1.21048 0.95148 0.95675 0.97378 1.19455 0.94553 1.01942 0.95326 1.20686 0.91814 0.95807 1.04008 1.21427 0.81704 0.89502 0.78798 1.90701 1.60923 1.40758 1.54730 1.48569 1.07546 1.19286 1.59190 1.22140 0.93956 0.88626 0.97249 1.21997 0.99604 0.97739 0.97204 1.21514 0.97668 0.95477 0.99694 1.18917 0.93315 0.93911 0.92055 0.99703 1.21578 0.93609 1.02038 1.40116 0.92051 1.25913 0.95461 1.01561 0.96234 1.70106 1.07063 1.30742 1.47502 0.85521 0.79297 0.79121 0.77828 1.18315 1.20920 1.20889 1.21616 0.97376 0.87255 0.93397 1.21003 0.92215 0.98106 0.98226 1.20536 0.95786 1.04824 0.97430 0.92322 0.93532 0.88881 0.88113 0.92194 0.88958 0.90412 0.83322 0.84271 0.84952 0.85837 0.90219 0.86481 0.92968 0.87803 0.93255 0.92572 0.93266 0.90864 0.94969 0.84913 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.42 -8.02 10.67 -144.34 -1.54 -9.56 16 3 C 0.06 0.91 6.32 71.98 0.45 1.36 16 4 C 0.05 0.91 5.12 71.98 0.37 1.28 16 5 O -0.33 -8.60 10.10 -87.80 -0.89 -9.49 16 6 C 0.11 3.22 6.69 22.51 0.15 3.37 16 7 C -0.21 -5.30 9.04 22.37 0.20 -5.10 16 8 C -0.07 -1.97 9.69 22.25 0.22 -1.75 16 9 C -0.11 -3.20 4.37 -19.85 -0.09 -3.29 16 10 C -0.08 -2.13 4.17 29.10 0.12 -2.01 16 11 C 0.50 19.41 7.69 87.66 0.67 20.09 16 12 O -0.59 -30.26 15.45 -3.02 -0.05 -30.31 16 13 N -0.61 -23.84 2.97 -817.99 -2.43 -26.27 16 14 C 0.10 2.67 6.37 86.51 0.55 3.22 16 15 C -0.13 -3.58 6.10 30.82 0.19 -3.39 16 16 C -0.11 -4.05 5.11 30.62 0.16 -3.90 16 17 C 0.04 1.90 2.25 -11.45 -0.03 1.87 16 18 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 19 C -0.53 -29.89 8.56 25.60 0.22 -29.67 16 20 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 21 C 0.01 0.43 5.30 84.66 0.45 0.88 16 22 N -0.92 -56.86 11.39 21.45 0.24 -56.62 16 23 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 24 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 26 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 27 C 0.13 6.35 5.40 86.38 0.47 6.82 16 28 C -0.08 -2.27 9.69 22.26 0.22 -2.05 16 29 C -0.17 -4.88 9.99 22.37 0.22 -4.65 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 1.34 7.65 -2.39 -0.02 1.32 16 36 H 0.08 1.24 7.67 -2.39 -0.02 1.23 16 37 H 0.15 2.82 6.30 -2.91 -0.02 2.80 16 38 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 39 H 0.13 2.37 7.88 -2.39 -0.02 2.35 16 40 H 0.12 2.49 7.64 -2.38 -0.02 2.47 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.12 2.04 5.93 -2.38 -0.01 2.03 16 43 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 45 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 48 H 0.07 4.46 5.12 -2.39 -0.01 4.45 16 49 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 50 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 51 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -82.15 410.44 4.07 -78.08 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.91 Total: 22.51 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 5.79 Total: -15.40 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -2.18 Total: -82.88 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -2.47 Total: -49.36 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -82.15 4.07 -78.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904277.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.825 kcal (2) G-P(sol) polarization free energy of solvation -82.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds