Wall clock time and date at job start Wed Apr 1 2020 05:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99621 * 2 1 4 4 C 1.53000 * 109.46951 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47430 * 64.99984 * 4 3 2 6 6 C 1.35903 * 117.00224 * 180.02562 * 5 4 3 7 7 C 1.38755 * 120.05492 * 359.97438 * 6 5 4 8 8 C 1.38116 * 119.94123 * 179.72926 * 7 6 5 9 9 C 1.38288 * 120.06137 * 359.97438 * 8 7 6 10 10 C 1.38241 * 120.10640 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.97181 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47340 * 89.99578 * 11 10 9 13 13 O 1.21285 * 119.99769 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00234 * 180.02562 * 12 11 10 15 15 C 1.46924 * 120.62710 * 359.97438 * 14 12 11 16 16 C 1.53189 * 108.77368 * 126.37440 * 15 14 12 17 17 C 1.53041 * 109.31773 * 54.63097 * 16 15 14 18 18 C 1.53035 * 109.53611 * 298.64138 * 17 16 15 19 19 H 1.09000 * 109.49845 * 301.37646 * 18 17 16 20 20 C 1.50703 * 109.49578 * 181.31457 * 18 17 16 21 21 H 1.08001 * 119.99984 * 359.97438 * 20 18 17 22 22 C 1.37876 * 119.99859 * 179.97438 * 20 18 17 23 23 N 1.31524 * 119.99781 * 179.97438 * 22 20 18 24 24 Si 1.86796 * 120.00355 * 359.97438 * 22 20 18 25 25 H 1.48505 * 109.47071 * 89.99656 * 24 22 20 26 26 H 1.48497 * 109.47221 * 209.99698 * 24 22 20 27 27 H 1.48500 * 109.47184 * 330.00293 * 24 22 20 28 28 C 1.46922 * 120.63393 * 179.72412 * 14 12 11 29 29 C 1.38169 * 120.05773 * 359.97438 * 10 9 8 30 30 H 1.08991 * 109.47568 * 300.00072 * 1 2 3 31 31 H 1.09003 * 109.47133 * 60.00403 * 1 2 3 32 32 H 1.09005 * 109.47054 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47420 * 59.99787 * 3 2 1 34 34 H 1.09002 * 109.47436 * 299.99329 * 3 2 1 35 35 H 1.09004 * 109.47541 * 304.99790 * 4 3 2 36 36 H 1.08998 * 109.47166 * 184.99823 * 4 3 2 37 37 H 1.08000 * 120.02684 * 359.70397 * 7 6 5 38 38 H 1.08002 * 119.97134 * 180.02562 * 8 7 6 39 39 H 1.07992 * 119.94652 * 180.02562 * 9 8 7 40 40 H 1.08998 * 109.47219 * 209.99957 * 11 10 9 41 41 H 1.09000 * 109.46803 * 329.99623 * 11 10 9 42 42 H 1.09003 * 109.58917 * 246.15887 * 15 14 12 43 43 H 1.08997 * 109.58904 * 6.43999 * 15 14 12 44 44 H 1.08999 * 109.49886 * 174.59105 * 16 15 14 45 45 H 1.09006 * 109.49693 * 294.67953 * 16 15 14 46 46 H 1.08999 * 109.45563 * 58.65526 * 17 16 15 47 47 H 1.08995 * 109.46456 * 178.62754 * 17 16 15 48 48 H 0.96998 * 119.99833 * 180.02562 * 23 22 20 49 49 H 1.09008 * 109.58257 * 353.41490 * 28 14 12 50 50 H 1.08997 * 109.59051 * 113.83902 * 28 14 12 51 51 H 1.08008 * 120.02679 * 180.02562 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3030 0.3975 -1.3807 7 6 6.1829 0.7941 -0.3838 8 6 7.5410 0.6031 -0.5470 9 6 8.0242 0.0166 -1.7024 10 6 7.1495 -0.3795 -2.6971 11 6 7.6793 -1.0189 -3.9547 12 6 7.7474 -2.5127 -3.7685 13 8 7.3996 -3.0094 -2.7181 14 7 8.1949 -3.2969 -4.7692 15 6 8.6192 -2.7099 -6.0475 16 6 10.0359 -3.1970 -6.3676 17 6 10.0640 -4.7269 -6.3382 18 6 9.6887 -5.2188 -4.9385 19 1 10.3878 -4.8094 -4.2094 20 6 9.7480 -6.7243 -4.9019 21 1 10.0253 -7.2755 -5.7883 22 6 9.4484 -7.3978 -3.7367 23 7 9.4997 -8.7116 -3.7049 24 14 8.9695 -6.4444 -2.2034 25 1 7.4970 -6.2534 -2.1789 26 1 9.3905 -7.2021 -0.9977 27 1 9.6402 -5.1195 -2.2147 28 6 8.2728 -4.7543 -4.6006 29 6 5.7900 -0.1906 -2.5386 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8508 0.5686 0.8427 36 1 3.9783 2.1766 0.0902 37 1 5.8062 1.2522 0.5187 38 1 8.2263 0.9113 0.2287 39 1 9.0864 -0.1323 -1.8280 40 1 7.0158 -0.7865 -4.7877 41 1 8.6766 -0.6332 -4.1660 42 1 7.9376 -3.0241 -6.8380 43 1 8.6130 -1.6227 -5.9704 44 1 10.3260 -2.8467 -7.3581 45 1 10.7315 -2.8060 -5.6249 46 1 9.3503 -5.1171 -7.0637 47 1 11.0653 -5.0766 -6.5895 48 1 9.2885 -9.1855 -2.8853 49 1 8.0405 -5.0156 -3.5681 50 1 7.5625 -5.2383 -5.2708 51 1 5.1071 -0.5006 -3.3159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:12 Heat of formation + Delta-G solvation = -92.399399 kcal Electronic energy + Delta-G solvation = -30556.462237 eV Core-core repulsion = 26421.315968 eV Total energy + Delta-G solvation = -4135.146270 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.41929 -39.68137 -38.38126 -37.48617 -36.71843 -33.51599 -32.56583 -31.87453 -31.52900 -30.53651 -29.51474 -27.84865 -26.69036 -25.17170 -24.57818 -23.47269 -22.59261 -22.00819 -21.19991 -19.71905 -18.57100 -17.89945 -17.20127 -16.94676 -16.67207 -16.53889 -16.18336 -15.81997 -15.44593 -15.33802 -15.23459 -14.67718 -14.45727 -13.99986 -13.91050 -13.59045 -13.39091 -13.13576 -13.06579 -12.88823 -12.80916 -12.53945 -12.47842 -12.14164 -11.99714 -11.80964 -11.65703 -11.54462 -11.27763 -11.07988 -11.02483 -10.86787 -10.58647 -10.37065 -10.10308 -10.07717 -9.74752 -9.53312 -9.19801 -9.08528 -8.77758 -8.56610 -8.20124 -8.02216 -6.07980 -4.09563 1.27132 1.46009 2.95122 3.03195 3.32994 3.40148 3.43043 3.51848 3.61798 3.82780 4.45037 4.45729 4.61805 4.67681 4.75639 4.84703 4.86454 4.91087 4.98030 4.99438 5.02588 5.09127 5.16640 5.24847 5.25379 5.32159 5.33958 5.35629 5.40571 5.52426 5.53612 5.65631 5.83166 5.98089 6.02614 6.11774 6.21407 6.24353 6.38644 6.41440 6.56152 6.58053 6.66304 6.68981 6.74316 6.78358 6.90856 7.17823 7.33620 7.46130 7.74680 7.91182 8.48802 8.63784 8.94988 9.53900 11.03931 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012032 B = 0.002559 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.579578 B =10938.590850 C =11888.002011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.308 6.308 6 C 0.130 3.870 7 C -0.213 4.213 8 C -0.079 4.079 9 C -0.142 4.142 10 C -0.021 4.021 11 C -0.103 4.103 12 C 0.507 3.493 13 O -0.536 6.536 14 N -0.609 5.609 15 C 0.108 3.892 16 C -0.137 4.137 17 C -0.100 4.100 18 C 0.004 3.996 19 H 0.029 0.971 20 C -0.516 4.516 21 H 0.077 0.923 22 C 0.073 3.927 23 N -0.897 5.897 24 Si 0.880 3.120 25 H -0.273 1.273 26 H -0.296 1.296 27 H -0.264 1.264 28 C 0.103 3.897 29 C -0.135 4.135 30 H 0.040 0.960 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.265 0.735 49 H 0.079 0.921 50 H 0.065 0.935 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.996 26.258 3.009 28.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.221 6.221 6 C 0.085 3.915 7 C -0.231 4.231 8 C -0.097 4.097 9 C -0.160 4.160 10 C -0.021 4.021 11 C -0.143 4.143 12 C 0.294 3.706 13 O -0.412 6.412 14 N -0.343 5.343 15 C -0.015 4.015 16 C -0.175 4.175 17 C -0.138 4.138 18 C -0.015 4.015 19 H 0.047 0.953 20 C -0.554 4.554 21 H 0.095 0.905 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.710 3.290 25 H -0.199 1.199 26 H -0.224 1.224 27 H -0.189 1.189 28 C -0.018 4.018 29 C -0.154 4.154 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.097 0.903 50 H 0.084 0.916 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.270 25.595 3.549 28.191 hybrid contribution -0.427 0.626 1.119 1.352 sum -11.698 26.221 4.668 29.089 Atomic orbital electron populations 1.22770 0.80786 1.03159 0.99853 1.88012 1.19849 1.26902 1.95372 1.22571 0.91615 0.85922 1.01284 1.22814 0.93648 0.98087 0.86903 1.86116 1.20208 1.77038 1.38783 1.18866 0.82137 0.96033 0.94511 1.21150 0.94312 1.08000 0.99685 1.20842 0.94541 0.97341 0.97024 1.20899 0.99704 1.01299 0.94085 1.19093 0.92408 0.95533 0.95089 1.20747 1.03569 0.93105 0.96855 1.20395 0.77925 0.88379 0.83879 1.90729 1.48320 1.75595 1.26591 1.48431 1.63429 1.08694 1.13714 1.21713 0.96493 0.97470 0.85812 1.21990 0.95833 0.98763 1.00924 1.21434 1.01361 0.92054 0.98959 1.19416 0.91485 0.97068 0.93572 0.95259 1.20950 1.47313 0.88463 0.98690 0.90481 1.25042 0.94498 0.94762 0.98664 1.69895 1.48663 1.06754 1.28086 0.86978 0.79725 0.79839 0.82463 1.19912 1.22366 1.18866 1.22498 1.00884 0.76028 1.02379 1.20186 0.94800 1.03055 0.97365 0.94105 0.93919 0.89355 0.91183 0.92084 0.91056 0.90519 0.85835 0.85848 0.86003 0.87997 0.87854 0.91481 0.90638 0.91617 0.92019 0.92507 0.92242 0.92528 0.90341 0.91628 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.17 10.67 -40.08 -0.43 -4.60 16 3 C 0.06 0.50 6.32 37.16 0.23 0.73 16 4 C 0.06 0.55 5.12 37.16 0.19 0.74 16 5 O -0.31 -4.03 10.10 -24.28 -0.25 -4.28 16 6 C 0.13 1.78 6.69 -39.22 -0.26 1.52 16 7 C -0.21 -2.56 9.04 -39.44 -0.36 -2.92 16 8 C -0.08 -0.96 10.04 -39.61 -0.40 -1.36 16 9 C -0.14 -1.90 9.70 -39.56 -0.38 -2.29 16 10 C -0.02 -0.29 4.37 -104.64 -0.46 -0.75 16 11 C -0.10 -1.34 4.17 -29.03 -0.12 -1.46 16 12 C 0.51 9.46 7.69 -10.99 -0.08 9.38 16 13 O -0.54 -12.62 15.45 5.55 0.09 -12.53 16 14 N -0.61 -11.27 2.98 -173.01 -0.52 -11.79 16 15 C 0.11 1.47 6.34 -3.71 -0.02 1.44 16 16 C -0.14 -1.95 6.08 -26.61 -0.16 -2.11 16 17 C -0.10 -1.87 5.11 -26.69 -0.14 -2.01 16 18 C 0.00 0.10 1.83 -91.86 -0.17 -0.07 16 19 H 0.03 0.73 7.19 -51.93 -0.37 0.36 16 20 C -0.52 -14.48 9.14 -34.44 -0.31 -14.79 16 21 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 22 C 0.07 2.16 5.45 -17.82 -0.10 2.06 16 23 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 24 Si 0.88 23.94 24.32 -169.99 -4.13 19.81 16 25 H -0.27 -7.57 6.92 56.52 0.39 -7.18 16 26 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 27 H -0.26 -7.17 6.53 56.52 0.37 -6.80 16 28 C 0.10 2.35 5.09 -3.92 -0.02 2.33 16 29 C -0.14 -1.96 9.64 -39.43 -0.38 -2.34 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.66 7.67 -51.93 -0.40 0.26 16 36 H 0.08 0.49 7.66 -51.93 -0.40 0.10 16 37 H 0.12 1.14 6.30 -52.49 -0.33 0.81 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.10 1.05 7.88 -51.93 -0.41 0.64 16 41 H 0.10 1.09 7.64 -51.93 -0.40 0.69 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.08 0.76 5.93 -51.93 -0.31 0.45 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 49 H 0.08 2.04 2.32 -51.92 -0.12 1.92 16 50 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 51 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -37.07 403.50 -8.46 -45.53 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -8.25 Total: -0.56 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -1.83 Total: -10.57 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.26 Total: -38.89 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.59 Total: -21.41 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -4.13 Total: 19.81 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.07 -8.46 -45.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.871 kcal (2) G-P(sol) polarization free energy of solvation -37.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds