Wall clock time and date at job start Wed Apr 1 2020 05:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99621 * 2 1 4 4 C 1.53000 * 109.46951 * 179.97438 * 3 2 1 5 5 O 1.42902 * 109.47430 * 64.99984 * 4 3 2 6 6 C 1.35903 * 117.00224 * 180.02562 * 5 4 3 7 7 C 1.38755 * 120.05492 * 359.97438 * 6 5 4 8 8 C 1.38116 * 119.94123 * 179.72926 * 7 6 5 9 9 C 1.38288 * 120.06137 * 359.97438 * 8 7 6 10 10 C 1.38241 * 120.10640 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.97181 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47340 * 89.99578 * 11 10 9 13 13 O 1.21285 * 119.99769 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00234 * 180.02562 * 12 11 10 15 15 C 1.46924 * 120.62710 * 359.97438 * 14 12 11 16 16 C 1.53189 * 108.77368 * 126.37440 * 15 14 12 17 17 C 1.53041 * 109.31773 * 54.63097 * 16 15 14 18 18 C 1.53035 * 109.53611 * 298.64138 * 17 16 15 19 19 H 1.09000 * 109.49845 * 301.37646 * 18 17 16 20 20 C 1.50703 * 109.49578 * 181.31457 * 18 17 16 21 21 H 1.08001 * 119.99984 * 359.97438 * 20 18 17 22 22 C 1.37876 * 119.99859 * 179.97438 * 20 18 17 23 23 N 1.31524 * 119.99781 * 179.97438 * 22 20 18 24 24 Si 1.86796 * 120.00355 * 359.97438 * 22 20 18 25 25 H 1.48505 * 109.47071 * 89.99656 * 24 22 20 26 26 H 1.48497 * 109.47221 * 209.99698 * 24 22 20 27 27 H 1.48500 * 109.47184 * 330.00293 * 24 22 20 28 28 C 1.46922 * 120.63393 * 179.72412 * 14 12 11 29 29 C 1.38169 * 120.05773 * 359.97438 * 10 9 8 30 30 H 1.08991 * 109.47568 * 300.00072 * 1 2 3 31 31 H 1.09003 * 109.47133 * 60.00403 * 1 2 3 32 32 H 1.09005 * 109.47054 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47420 * 59.99787 * 3 2 1 34 34 H 1.09002 * 109.47436 * 299.99329 * 3 2 1 35 35 H 1.09004 * 109.47541 * 304.99790 * 4 3 2 36 36 H 1.08998 * 109.47166 * 184.99823 * 4 3 2 37 37 H 1.08000 * 120.02684 * 359.70397 * 7 6 5 38 38 H 1.08002 * 119.97134 * 180.02562 * 8 7 6 39 39 H 1.07992 * 119.94652 * 180.02562 * 9 8 7 40 40 H 1.08998 * 109.47219 * 209.99957 * 11 10 9 41 41 H 1.09000 * 109.46803 * 329.99623 * 11 10 9 42 42 H 1.09003 * 109.58917 * 246.15887 * 15 14 12 43 43 H 1.08997 * 109.58904 * 6.43999 * 15 14 12 44 44 H 1.08999 * 109.49886 * 174.59105 * 16 15 14 45 45 H 1.09006 * 109.49693 * 294.67953 * 16 15 14 46 46 H 1.08999 * 109.45563 * 58.65526 * 17 16 15 47 47 H 1.08995 * 109.46456 * 178.62754 * 17 16 15 48 48 H 0.96998 * 119.99833 * 180.02562 * 23 22 20 49 49 H 1.09008 * 109.58257 * 353.41490 * 28 14 12 50 50 H 1.08997 * 109.59051 * 113.83902 * 28 14 12 51 51 H 1.08008 * 120.02679 * 180.02562 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3030 0.3975 -1.3807 7 6 6.1829 0.7941 -0.3838 8 6 7.5410 0.6031 -0.5470 9 6 8.0242 0.0166 -1.7024 10 6 7.1495 -0.3795 -2.6971 11 6 7.6793 -1.0189 -3.9547 12 6 7.7474 -2.5127 -3.7685 13 8 7.3996 -3.0094 -2.7181 14 7 8.1949 -3.2969 -4.7692 15 6 8.6192 -2.7099 -6.0475 16 6 10.0359 -3.1970 -6.3676 17 6 10.0640 -4.7269 -6.3382 18 6 9.6887 -5.2188 -4.9385 19 1 10.3878 -4.8094 -4.2094 20 6 9.7480 -6.7243 -4.9019 21 1 10.0253 -7.2755 -5.7883 22 6 9.4484 -7.3978 -3.7367 23 7 9.4997 -8.7116 -3.7049 24 14 8.9695 -6.4444 -2.2034 25 1 7.4970 -6.2534 -2.1789 26 1 9.3905 -7.2021 -0.9977 27 1 9.6402 -5.1195 -2.2147 28 6 8.2728 -4.7543 -4.6006 29 6 5.7900 -0.1906 -2.5386 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8508 0.5686 0.8427 36 1 3.9783 2.1766 0.0902 37 1 5.8062 1.2522 0.5187 38 1 8.2263 0.9113 0.2287 39 1 9.0864 -0.1323 -1.8280 40 1 7.0158 -0.7865 -4.7877 41 1 8.6766 -0.6332 -4.1660 42 1 7.9376 -3.0241 -6.8380 43 1 8.6130 -1.6227 -5.9704 44 1 10.3260 -2.8467 -7.3581 45 1 10.7315 -2.8060 -5.6249 46 1 9.3503 -5.1171 -7.0637 47 1 11.0653 -5.0766 -6.5895 48 1 9.2885 -9.1855 -2.8853 49 1 8.0405 -5.0156 -3.5681 50 1 7.5625 -5.2383 -5.2708 51 1 5.1071 -0.5006 -3.3159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597907964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:11 Heat of formation + Delta-G solvation = -117.671764 kcal Electronic energy + Delta-G solvation = -30557.558129 eV Core-core repulsion = 26421.315968 eV Total energy + Delta-G solvation = -4136.242162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.50609 -40.89614 -39.21375 -38.56747 -37.96475 -35.37017 -33.91744 -33.34479 -32.30090 -32.16239 -30.36420 -28.99211 -27.29253 -26.94352 -26.03828 -24.27642 -23.54581 -23.51502 -22.22367 -21.22603 -19.90861 -19.00243 -18.78412 -18.31138 -17.85960 -17.38158 -17.10033 -16.85027 -16.54002 -16.37955 -16.25883 -16.17648 -15.65297 -15.41497 -15.14152 -15.07877 -14.80718 -14.53156 -14.28679 -14.04101 -13.99807 -13.67303 -13.55451 -13.19930 -13.19048 -12.94641 -12.89046 -12.61033 -12.49388 -12.34317 -12.28978 -12.11159 -11.87492 -11.79242 -11.70902 -11.58818 -11.26095 -11.04998 -10.83288 -10.75610 -10.71305 -9.79953 -9.55169 -9.15014 -8.41839 -6.42785 0.30187 0.49252 1.19362 1.26758 1.38227 1.65041 2.06153 2.17683 2.21418 2.76479 2.81109 2.96082 3.59803 3.73688 3.81491 3.95778 4.05710 4.07462 4.08490 4.17510 4.19194 4.23806 4.28668 4.35467 4.40726 4.45356 4.46455 4.48492 4.51406 4.55774 4.57620 4.66165 4.66789 4.78251 4.80398 4.82151 4.91596 5.00370 5.06458 5.18432 5.25392 5.30633 5.41961 5.44939 5.54430 5.60646 5.64117 5.71192 5.80119 6.15847 6.24983 6.45711 6.53919 6.66651 7.22475 7.22895 8.74308 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012032 B = 0.002559 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.579578 B =10938.590850 C =11888.002011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.060 3.940 4 C 0.051 3.949 5 O -0.329 6.329 6 C 0.115 3.885 7 C -0.214 4.214 8 C -0.083 4.083 9 C -0.158 4.158 10 C -0.036 4.036 11 C -0.090 4.090 12 C 0.499 3.501 13 O -0.595 6.595 14 N -0.611 5.611 15 C 0.100 3.900 16 C -0.128 4.128 17 C -0.099 4.099 18 C 0.004 3.996 19 H 0.014 0.986 20 C -0.509 4.509 21 H 0.052 0.948 22 C 0.029 3.971 23 N -0.937 5.937 24 Si 0.938 3.062 25 H -0.288 1.288 26 H -0.294 1.294 27 H -0.267 1.267 28 C 0.108 3.892 29 C -0.159 4.159 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.109 0.891 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.267 0.733 49 H 0.044 0.956 50 H 0.059 0.941 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.932 30.349 2.445 32.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.016 4.016 4 C -0.023 4.023 5 O -0.244 6.244 6 C 0.070 3.930 7 C -0.232 4.232 8 C -0.101 4.101 9 C -0.176 4.176 10 C -0.037 4.037 11 C -0.129 4.129 12 C 0.289 3.711 13 O -0.476 6.476 14 N -0.344 5.344 15 C -0.020 4.020 16 C -0.166 4.166 17 C -0.137 4.137 18 C -0.016 4.016 19 H 0.032 0.968 20 C -0.548 4.548 21 H 0.070 0.930 22 C -0.169 4.169 23 N -0.578 5.578 24 Si 0.768 3.232 25 H -0.216 1.216 26 H -0.221 1.221 27 H -0.192 1.192 28 C -0.015 4.015 29 C -0.178 4.178 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.101 0.899 43 H 0.142 0.858 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.063 0.937 50 H 0.078 0.922 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.194 29.729 2.946 31.903 hybrid contribution -0.490 -0.636 1.271 1.503 sum -11.684 29.093 4.217 31.634 Atomic orbital electron populations 1.22911 0.79313 1.03562 1.01214 1.87953 1.21721 1.28893 1.95685 1.22775 0.90693 0.85147 1.03022 1.23158 0.94695 0.99173 0.85289 1.86093 1.19991 1.77560 1.40734 1.19092 0.82803 0.96251 0.94866 1.21477 0.94223 1.07401 1.00127 1.21228 0.95093 0.96514 0.97273 1.21195 1.00308 1.01621 0.94510 1.19280 0.92401 0.95983 0.96001 1.20795 1.06302 0.88178 0.97599 1.21423 0.76309 0.90623 0.82706 1.90701 1.50771 1.77064 1.29038 1.48484 1.63401 1.06689 1.15786 1.22160 0.96137 1.00077 0.83663 1.21954 0.96466 0.94644 1.03510 1.21385 1.00968 0.95949 0.95368 1.19354 0.91787 0.93872 0.96542 0.96805 1.21353 1.44986 0.91267 0.97193 0.93013 1.25597 0.95247 0.95192 1.00904 1.69984 1.51008 1.07924 1.28850 0.86066 0.78256 0.78523 0.80306 1.21589 1.22143 1.19171 1.21965 0.99816 0.79679 1.00045 1.20369 0.95269 1.04120 0.98057 0.92114 0.93122 0.89573 0.88016 0.91575 0.91567 0.87599 0.83241 0.83209 0.84958 0.84746 0.84390 0.89852 0.85828 0.87289 0.92022 0.92393 0.92638 0.92397 0.93750 0.92235 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -9.00 10.67 -144.34 -1.54 -10.54 16 3 C 0.06 0.85 6.32 71.98 0.45 1.30 16 4 C 0.05 0.86 5.12 71.98 0.37 1.23 16 5 O -0.33 -8.48 10.10 -87.82 -0.89 -9.37 16 6 C 0.11 3.08 6.69 22.50 0.15 3.23 16 7 C -0.21 -4.77 9.04 22.36 0.20 -4.57 16 8 C -0.08 -1.84 10.04 22.25 0.22 -1.61 16 9 C -0.16 -3.95 9.70 22.28 0.22 -3.73 16 10 C -0.04 -0.97 4.37 -19.88 -0.09 -1.05 16 11 C -0.09 -2.04 4.17 29.10 0.12 -1.92 16 12 C 0.50 17.87 7.69 87.66 0.67 18.55 16 13 O -0.59 -28.31 15.45 -3.05 -0.05 -28.35 16 14 N -0.61 -21.41 2.98 -819.68 -2.44 -23.85 16 15 C 0.10 2.26 6.34 86.36 0.55 2.81 16 16 C -0.13 -3.08 6.08 30.67 0.19 -2.90 16 17 C -0.10 -3.52 5.11 30.62 0.16 -3.36 16 18 C 0.00 0.19 1.83 -11.59 -0.02 0.17 16 19 H 0.01 0.69 7.19 -2.39 -0.02 0.68 16 20 C -0.51 -29.36 9.14 25.60 0.23 -29.13 16 21 H 0.05 3.19 7.99 -2.91 -0.02 3.16 16 22 C 0.03 1.78 5.45 84.65 0.46 2.24 16 23 N -0.94 -60.20 13.96 21.45 0.30 -59.90 16 24 Si 0.94 52.00 24.32 68.60 1.67 53.67 16 25 H -0.29 -16.55 6.92 99.48 0.69 -15.86 16 26 H -0.29 -15.91 7.11 99.48 0.71 -15.20 16 27 H -0.27 -14.68 6.53 99.48 0.65 -14.03 16 28 C 0.11 4.94 5.09 86.23 0.44 5.38 16 29 C -0.16 -4.53 9.64 22.36 0.22 -4.32 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 1.15 7.67 -2.39 -0.02 1.13 16 36 H 0.11 1.09 7.66 -2.39 -0.02 1.07 16 37 H 0.15 2.39 6.30 -2.91 -0.02 2.37 16 38 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 40 H 0.13 2.18 7.88 -2.39 -0.02 2.16 16 41 H 0.14 2.18 7.64 -2.39 -0.02 2.16 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.12 1.66 5.93 -2.39 -0.01 1.65 16 44 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 46 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 49 H 0.04 2.36 2.32 -2.38 -0.01 2.35 16 50 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 51 H 0.12 3.42 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -86.97 403.50 3.68 -83.29 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.84 Total: 11.15 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 5.79 Total: -16.09 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -2.14 Total: -83.75 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -2.47 Total: -48.27 kcal Atomic # 14 Polarization: 52.00 SS G_CDS: 1.67 Total: 53.67 kcal Total: -86.97 3.68 -83.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.383 kcal (2) G-P(sol) polarization free energy of solvation -86.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds