Wall clock time and date at job start Wed Apr 1 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99910 * 2 1 4 4 C 1.53002 * 109.47038 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46778 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.46664 * 179.97438 * 5 4 3 7 7 C 1.42898 * 113.99851 * 180.02562 * 6 5 4 8 8 C 1.53048 * 109.46022 * 270.06771 * 7 6 5 9 9 C 1.53196 * 109.31162 * 178.61678 * 8 7 6 10 10 N 1.46926 * 108.77532 * 54.63221 * 9 8 7 11 11 C 1.34776 * 120.62681 * 126.37098 * 10 9 8 12 12 O 1.21612 * 120.00017 * 354.59638 * 11 10 9 13 13 C 1.47427 * 120.00252 * 174.59574 * 11 10 9 14 14 C 1.39228 * 120.28132 * 310.68582 * 13 11 10 15 15 C 1.38221 * 120.08975 * 179.97438 * 14 13 11 16 16 C 1.38824 * 120.67846 * 0.02562 * 15 14 13 17 17 C 1.37595 * 120.57286 * 359.97438 * 16 15 14 18 18 C 1.40713 * 119.87705 * 359.74776 * 17 16 15 19 19 C 1.40888 * 120.32614 * 180.25306 * 18 17 16 20 20 H 1.07999 * 120.00134 * 151.71649 * 19 18 17 21 21 C 1.40278 * 119.99872 * 331.71940 * 19 18 17 22 22 N 1.30627 * 119.99920 * 349.12730 * 21 19 18 23 23 Si 1.86800 * 119.99694 * 169.13601 * 21 19 18 24 24 H 1.48504 * 109.47060 * 89.99659 * 23 21 19 25 25 H 1.48510 * 109.46816 * 209.99401 * 23 21 19 26 26 H 1.48496 * 109.47178 * 329.99560 * 23 21 19 27 27 C 1.46923 * 118.74251 * 306.39187 * 10 9 8 28 28 C 1.53042 * 109.46112 * 149.99859 * 7 6 5 29 29 H 1.09004 * 109.46929 * 60.00299 * 1 2 3 30 30 H 1.09000 * 109.47329 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47455 * 300.00249 * 1 2 3 32 32 H 1.08995 * 109.47095 * 59.99445 * 3 2 1 33 33 H 1.09004 * 109.46748 * 299.99789 * 3 2 1 34 34 H 1.09000 * 109.47152 * 59.99275 * 4 3 2 35 35 H 1.08998 * 109.46767 * 299.99710 * 4 3 2 36 36 H 1.08997 * 109.47330 * 60.00016 * 5 4 3 37 37 H 1.08998 * 109.47332 * 299.99482 * 5 4 3 38 38 H 1.09005 * 109.45326 * 30.03294 * 7 6 5 39 39 H 1.08994 * 109.49419 * 58.66006 * 8 7 6 40 40 H 1.08998 * 109.49370 * 298.56374 * 8 7 6 41 41 H 1.08999 * 109.58356 * 294.84691 * 9 8 7 42 42 H 1.08999 * 109.58087 * 174.41967 * 9 8 7 43 43 H 1.08002 * 119.95306 * 359.97438 * 14 13 11 44 44 H 1.08006 * 119.65793 * 179.97438 * 15 14 13 45 45 H 1.08003 * 119.71127 * 179.97438 * 16 15 14 46 46 H 1.07998 * 120.06262 * 180.02562 * 17 16 15 47 47 H 0.96996 * 119.99653 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.58607 * 173.39711 * 27 10 9 49 49 H 1.09008 * 109.58397 * 293.67841 * 27 10 9 50 50 H 1.09006 * 109.49589 * 61.43326 * 28 7 6 51 51 H 1.08999 * 109.52481 * 301.35003 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 8 5.5823 2.4696 -0.0013 7 6 6.2647 3.7251 -0.0013 8 6 6.5068 4.1738 -1.4443 9 6 7.2076 5.5361 -1.4405 10 7 8.4267 5.4384 -0.6263 11 6 9.6209 5.8063 -1.1313 12 8 9.7132 6.1303 -2.2999 13 6 10.8154 5.8159 -0.2672 14 6 10.7779 6.4428 0.9754 15 6 11.8999 6.4490 1.7826 16 6 13.0738 5.8345 1.3684 17 6 13.1415 5.2069 0.1458 18 6 12.0116 5.1812 -0.6925 19 6 12.0689 4.5367 -1.9440 20 1 11.1735 4.1139 -2.3752 21 6 13.2890 4.4440 -2.6300 22 7 14.3221 5.1307 -2.2209 23 14 13.4361 3.3386 -4.1286 24 1 13.0929 4.1115 -5.3494 25 1 14.8289 2.8346 -4.2371 26 1 12.5037 2.1911 -3.9908 27 6 8.3194 4.9316 0.7486 28 6 7.6062 3.5762 0.7202 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6885 1.8465 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.8568 0.6439 -0.8908 35 1 3.8574 0.6437 0.8891 36 1 3.8365 3.1236 0.8887 37 1 3.8357 3.1231 -0.8913 38 1 5.6563 4.4690 0.5131 39 1 5.5524 4.2570 -1.9643 40 1 7.1357 3.4426 -1.9520 41 1 6.5429 6.2877 -1.0144 42 1 7.4709 5.8143 -2.4609 43 1 9.8708 6.9249 1.3090 44 1 11.8632 6.9377 2.7450 45 1 13.9413 5.8491 2.0115 46 1 14.0588 4.7310 -0.1680 47 1 15.1656 5.0669 -2.6955 48 1 9.3163 4.8112 1.1724 49 1 7.7476 5.6353 1.3537 50 1 8.2248 2.8506 0.1921 51 1 7.4349 3.2339 1.7408 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601224978.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:26 Heat of formation + Delta-G solvation = -134.439316 kcal Electronic energy + Delta-G solvation = -30516.432447 eV Core-core repulsion = 26379.463190 eV Total energy + Delta-G solvation = -4136.969257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.28530 -39.77520 -38.94854 -38.57008 -37.29233 -35.63630 -34.08225 -32.85495 -32.09211 -31.73098 -30.91983 -28.00799 -27.42681 -26.23523 -25.37686 -24.35941 -23.49995 -22.77303 -22.57857 -21.63419 -20.12459 -19.12645 -18.24843 -17.86094 -17.38560 -17.31383 -17.04096 -16.86799 -16.26615 -16.07516 -16.05573 -15.76532 -15.47780 -15.31410 -15.15755 -14.77486 -14.46821 -14.34229 -14.10283 -13.81311 -13.68621 -13.45187 -13.22187 -13.10744 -12.99915 -12.85097 -12.70016 -12.65454 -12.42621 -12.25580 -12.22203 -12.19437 -11.95452 -11.79610 -11.72924 -11.52365 -11.47992 -11.15031 -10.63778 -10.54895 -10.38193 -9.61732 -9.31720 -9.29653 -8.68846 -6.41141 0.66287 1.01623 1.29471 1.41896 1.47077 2.00988 2.15696 2.24753 2.40113 2.71374 3.13135 3.67043 3.70028 3.78270 3.93208 4.01935 4.08250 4.12830 4.20173 4.27239 4.30455 4.38604 4.43603 4.45023 4.48016 4.53524 4.55261 4.57056 4.62535 4.66203 4.76318 4.82045 4.83894 4.86154 4.90355 5.03253 5.07527 5.08453 5.12698 5.14490 5.25196 5.29580 5.36373 5.59069 5.75268 5.87453 6.01729 6.12348 6.20112 6.28417 6.32875 6.50905 6.65983 6.86603 6.94832 7.48593 8.25848 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013456 B = 0.002292 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.394941 B =12213.573346 C =13290.276112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.422 6.422 3 C 0.066 3.934 4 C -0.117 4.117 5 C 0.063 3.937 6 O -0.401 6.401 7 C 0.101 3.899 8 C -0.147 4.147 9 C 0.113 3.887 10 N -0.617 5.617 11 C 0.577 3.423 12 O -0.589 6.589 13 C -0.269 4.269 14 C -0.055 4.055 15 C -0.233 4.233 16 C -0.093 4.093 17 C -0.182 4.182 18 C 0.112 3.888 19 C -0.466 4.466 20 H 0.054 0.946 21 C 0.035 3.965 22 N -0.817 5.817 23 Si 0.975 3.025 24 H -0.271 1.271 25 H -0.252 1.252 26 H -0.264 1.264 27 C 0.110 3.890 28 C -0.127 4.127 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.042 0.958 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.127 0.873 44 H 0.133 0.867 45 H 0.119 0.881 46 H 0.107 0.893 47 H 0.291 0.709 48 H 0.087 0.913 49 H 0.099 0.901 50 H 0.043 0.957 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.715 -4.132 8.384 24.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.011 4.011 4 C -0.155 4.155 5 C -0.013 4.013 6 O -0.321 6.321 7 C 0.044 3.956 8 C -0.186 4.186 9 C -0.009 4.009 10 N -0.350 5.350 11 C 0.370 3.630 12 O -0.470 6.470 13 C -0.274 4.274 14 C -0.074 4.074 15 C -0.252 4.252 16 C -0.112 4.112 17 C -0.201 4.201 18 C 0.109 3.891 19 C -0.495 4.495 20 H 0.072 0.928 21 C -0.180 4.180 22 N -0.443 5.443 23 Si 0.796 3.204 24 H -0.196 1.196 25 H -0.176 1.176 26 H -0.188 1.188 27 C -0.012 4.012 28 C -0.166 4.166 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.061 0.939 41 H 0.114 0.886 42 H 0.084 0.916 43 H 0.145 0.855 44 H 0.150 0.850 45 H 0.137 0.863 46 H 0.125 0.875 47 H 0.101 0.899 48 H 0.106 0.894 49 H 0.118 0.882 50 H 0.062 0.938 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.227 -4.251 7.713 23.908 hybrid contribution 0.307 -0.110 -1.207 1.250 sum -21.920 -4.361 6.507 23.277 Atomic orbital electron populations 1.22933 0.79239 1.03814 1.01056 1.87836 1.21706 1.28950 1.95671 1.22412 0.92413 0.84538 1.01689 1.21335 0.93732 0.96964 1.03458 1.22476 0.80278 0.96812 1.01763 1.87917 1.18988 1.30018 1.95156 1.22036 0.93248 0.85867 0.94467 1.22362 1.01301 0.96361 0.98566 1.21577 0.85299 0.97494 0.96531 1.48179 1.06485 1.64911 1.15458 1.18600 0.83392 0.74752 0.86283 1.90637 1.85914 1.51093 1.19378 1.19718 0.95427 1.13339 0.98878 1.20930 0.98381 0.96561 0.91480 1.20769 0.93529 1.09269 1.01660 1.21159 0.97868 0.96806 0.95362 1.21363 0.99156 1.05229 0.94367 1.17751 0.90780 0.88338 0.92268 1.19577 0.94682 1.32328 1.02961 0.92802 1.26687 0.94321 0.95361 1.01668 1.69722 1.02839 1.32663 1.39043 0.85323 0.79140 0.78641 0.77330 1.19589 1.17555 1.18771 1.21963 1.02687 0.94640 0.81915 1.21966 0.95147 0.97175 1.02278 0.93067 0.88803 0.92823 0.91459 0.91955 0.91912 0.91215 0.91084 0.92034 0.88921 0.88532 0.93940 0.88601 0.91603 0.85502 0.84957 0.86324 0.87489 0.89855 0.89442 0.88250 0.93767 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.36 10.70 -148.98 -1.59 -8.96 16 3 C 0.07 0.87 5.94 71.98 0.43 1.30 16 4 C -0.12 -1.95 5.95 30.59 0.18 -1.76 16 5 C 0.06 0.97 5.75 71.98 0.41 1.39 16 6 O -0.40 -9.16 9.99 -148.98 -1.49 -10.65 16 7 C 0.10 2.18 2.57 30.62 0.08 2.26 16 8 C -0.15 -3.69 5.69 30.68 0.17 -3.51 16 9 C 0.11 3.29 6.44 86.36 0.56 3.84 16 10 N -0.62 -21.88 2.97 -822.77 -2.45 -24.33 16 11 C 0.58 27.57 6.49 86.66 0.56 28.14 16 12 O -0.59 -33.21 15.27 -4.07 -0.06 -33.28 16 13 C -0.27 -13.23 4.84 -19.70 -0.10 -13.33 16 14 C -0.06 -2.22 7.56 22.50 0.17 -2.05 16 15 C -0.23 -9.06 10.03 22.41 0.22 -8.83 16 16 C -0.09 -4.06 10.01 22.26 0.22 -3.83 16 17 C -0.18 -9.44 8.66 22.72 0.20 -9.24 16 18 C 0.11 6.22 5.58 -21.11 -0.12 6.11 16 19 C -0.47 -27.22 7.92 23.42 0.19 -27.03 16 20 H 0.05 3.29 7.02 -2.91 -0.02 3.27 16 21 C 0.04 1.89 5.26 85.37 0.45 2.34 16 22 N -0.82 -44.26 10.81 21.88 0.24 -44.02 16 23 Si 0.97 42.12 29.58 68.60 2.03 44.15 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 26 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 27 C 0.11 3.03 5.30 86.36 0.46 3.49 16 28 C -0.13 -3.19 5.73 30.67 0.18 -3.02 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 37 H 0.06 0.81 7.84 -2.39 -0.02 0.79 16 38 H 0.09 1.44 7.79 -2.38 -0.02 1.42 16 39 H 0.10 1.88 7.84 -2.39 -0.02 1.86 16 40 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.07 2.30 6.99 -2.39 -0.02 2.28 16 43 H 0.13 4.17 7.39 -2.91 -0.02 4.15 16 44 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 45 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 46 H 0.11 5.83 6.18 -2.91 -0.02 5.81 16 47 H 0.29 14.15 8.29 -92.71 -0.77 13.38 16 48 H 0.09 2.80 5.16 -2.39 -0.01 2.78 16 49 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 50 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 51 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -74.12 407.79 3.10 -71.03 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.91 Total: 28.31 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 5.51 Total: -22.25 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -2.21 Total: -68.35 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -3.14 Total: -52.89 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -74.12 3.10 -71.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601224978.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.412 kcal (2) G-P(sol) polarization free energy of solvation -74.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds